BAC Information

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BAC

Clone NameB6Ng01-136O04
Chromosome9 (Build37)
Map Location 30,514,321 - 30,666,891
singlet/doubletdoublet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136O04.bB6Ng01-136O04.g
ACCDH936541DH936542
length1,0821,138
definitionDH936541|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O04, 5' end.DH936542|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,665,791 - 30,666,891)(30,514,321 - 30,515,478)
sequence
gaattccaggacagccagggctacacagtgaaaccctgttttgaacaaac
taacaagaaaaaggaaaaagggaaaaggaaaaaaaagagaaaaagaaaag
gaaaactgttatctttcctggtgtctggtgagagatcactgccactatct
tctctctcctctgtagagcgctgcttgcctccagcagggccttgccctgt
gtggagttgtcctacaacacaccacggtgtaggttactttgaatttatcc
cttagagcttgttcaggttctcaggtctagagttaagccttctgctaaat
ttgagaaattttaagccaatatttcttcaagtctttttcagctctgccct
ctttctcctctcctttcaagactctgataacatggatgtaagttaagatt
tgtttgttttgttactgtttctcatatctttgtatctctgtgtatttttt
ggtctactttctttctgttgtaaattttttattgccctttcttcagattt
agttttttcttagttctttgtaccactttttaaaaacgtgcttagacctt
cagattctttagacagtcaagaatcctgacgagttgcccactgaagcatt
ttaatgatggttattttgtcagacacttttaaaaacctgatgaaactaat
gttggtgtctcttatggctggagcctgaaatgtactccacaggctcatgg
atttgaatagctgatggacagtgctgttttgggggtgggttgtggaatct
ttgagatgagtcattgagagtgggccttgaaggttgtgctcactcatggt
acagacacagcttccagcctttttgattggctagaatgtgaacaggcttc
attgcatgctcttattgctgtgccttttctatcacgatggaccgcactcc
ttggaatcttgagcccacataagtcctcccttccataaattgcatcttct
gggttttttttttttgtgacagggaggggattagtaattattatactacc
actagaactgtctcttcagctttcgaagattgtattttatagagagtcag
ggcctcagtaggattctataaggaacgaccaa
gaattctcagtcaggtctagaatacaaccagaaatgcttctgaggccttc
agagaccttggggactatgaatgtctctgagtccccaaattcactcctta
tatagtctctcagcctgttagacttcaggggcagtgggtctcctatggtt
cacaccctcatttattacccactgtaccctgagaagcaaagttcttcctg
agtgggcagagatgtctgttccatttgattcaaaaacaccattctcatga
agatccaactctactgctaagataactgatcttgctttacatttggccca
atggggcaaagggttgtacacaggaaagattttctacatccccaaatgac
cagaacaattggcttctgactctatattgaggaagtaaaactttctgtaa
agaagtcacagttccagccctgatccacctgtgcagactccgcacctaag
aggtccagagaataaactaggtataggaaagaaacaggagagggtaagga
ggaagaaagatatttcctcatacaatggctgtggccaggatccagtctgc
tttttaaaaacagtgcttaatactgaataccaaaattacacaagatttca
gactccccaacccccttctctggatagatcccagtaatttccataatgaa
gcaaaactgagaaagacccttcagacctactcaagtctccatatagtcat
tttttaaactgccatcttttcccattgaattagttatttttctactgatg
tgataaaacactatggccaaggcaaattatatataaaaaaagcaagttct
tctcagcctattaatttggcttacaattttcagagggtttaagagtacat
gatggcagagtgaaggaacaatctagagctcacatcttgatccacagcat
gagagagagagagagagagagacagtagaaataggaggagtcttttgaaa
tctcaagcctaccattagtgacacatttacaccaggtcatacctctatcc
ttccaaacagttctgtcaaccagtatcagtattcaacttgtgacaccaca
cccaggcttcatgagcatttttgttgggtaggttatgaattccacactca
aggcacctgcagtccatctgtagaatagatcatgcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30665791_30666891
seq2: B6Ng01-136O04.b_47_1128 (reverse)

seq1  TTGGTCCTGTTCCTCTATAGAATCCTAACTAGTGCACTGGACTCTCTATA  50
      ||||||  |||||| ||||||||||| |||   || || |||||||  ||
seq2  TTGGTC--GTTCCT-TATAGAATCCT-ACTGAGGCCCT-GACTCTC--TA  43

seq1  TAAAATACAATCCTCTGAAAGCTGAAGGAGACAGTATCTAGTGGTAGTAT  100
      |||||||||||| || |||||||||| |||||||| ||||||||||||||
seq2  TAAAATACAATCTTC-GAAAGCTGAA-GAGACAGT-TCTAGTGGTAGTAT  90

seq1  AATAGTTACTTATCCCCTCACTGTGACAAAAAAAAAAAAAAAAAAAAAAC  150
      |||| ||||| |||||||| |||| ||         |||||||||||| |
seq2  AATAATTACTAATCCCCTCCCTGTCAC---------AAAAAAAAAAAACC  131

seq1  CAGAAGATGCAATTTATGGAAGGGAGGACTTATGTGGGCTCAAGATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGCAATTTATGGAAGGGAGGACTTATGTGGGCTCAAGATTCCA  181

seq1  AGGAGTGCGGTCCATCGTGATAGAAAAGGCACAGCAATAAGAGCATGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGCGGTCCATCGTGATAGAAAAGGCACAGCAATAAGAGCATGCAA  231

seq1  TGAAGCCTGTTCACATTCTAGCCAATC-AAAAGGCTGGAAGCTGTGTCTT  299
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TGAAGCCTGTTCACATTCTAGCCAATCAAAAAGGCTGGAAGCTGTGTC-T  280

seq1  GTACCATGAGTGAGCACAACCTTCAAGGCCCACTCTCAATGACTCATCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCATGAGTGAGCACAACCTTCAAGGCCCACTCTCAATGACTCATCTC  330

seq1  AAAGATTCCACAACCCACCCCCAAAACAGCACTGTCCATCAGCTATTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCCACAACCCACCCCCAAAACAGCACTGTCCATCAGCTATTCAA  380

seq1  ATCCATGAGCCTGTGGAGTACATTTCAGGCTCCAGCCATAAGAGACACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAGCCTGTGGAGTACATTTCAGGCTCCAGCCATAAGAGACACCA  430

seq1  ACATTAGTTTCATCAGGTTTTTAAAAGTGTCTGACAAAATAACCATCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGTTTCATCAGGTTTTTAAAAGTGTCTGACAAAATAACCATCATT  480

seq1  AAAATGCTTCAGTGGGCAACTCGTCAGGATTCTTGACTGTCTAAAGAATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTCAGTGGGCAACTCGTCAGGATTCTTGACTGTCTAAAGAATC  530

seq1  TGAAGGTCTAAGCACGTTTTTAAAAAGTGGTACAAAGAACTAAGAAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCTAAGCACGTTTTTAAAAAGTGGTACAAAGAACTAAGAAAAAA  580

seq1  CTAAATCTGAAGAAAGGGCAATAAAAAATTTACAACAGAAAGAAAGTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTGAAGAAAGGGCAATAAAAAATTTACAACAGAAAGAAAGTAGA  630

seq1  CCAAAAAATACACAGAGATACAAAGATATGAGAAACAGTAACAAAACAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATACACAGAGATACAAAGATATGAGAAACAGTAACAAAACAAA  680

seq1  CAAATCTTAACTTACATCCATGTTATCAGAGTCTTGAAAGGAGAGGAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTAACTTACATCCATGTTATCAGAGTCTTGAAAGGAGAGGAGAA  730

seq1  AGAGGGCAGAGCTGAAAAAGACTTGAAGAAATATTGGCTTAAAATTTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCAGAGCTGAAAAAGACTTGAAGAAATATTGGCTTAAAATTTCTC  780

seq1  AAATTTAGCAGAAGGCTTAACTCTAGACCTGAGAACCTGAACAAGCTCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAGCAGAAGGCTTAACTCTAGACCTGAGAACCTGAACAAGCTCTA  830

seq1  AGGGATAAATTCAAAGTAACCTACACCGTGGTGTGTTGTAGGACAACTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATAAATTCAAAGTAACCTACACCGTGGTGTGTTGTAGGACAACTCC  880

seq1  ACACAGGGCAAGGCCCTGCTGGAGGCAAGCAGCGCTCTACAGAGGAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCAAGGCCCTGCTGGAGGCAAGCAGCGCTCTACAGAGGAGAGA  930

seq1  GAAGATAGTGGCAGTGATCTCTCACCAGACACCAGGAAAGATAACAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAGTGGCAGTGATCTCTCACCAGACACCAGGAAAGATAACAGTTT  980

seq1  TCCTTTTCTTTTTCTCTTTTTTTTCCTTTTCCCTTTTTCCTTTTTCTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTTTCTCTTTTTTTTCCTTTTCCCTTTTTCCTTTTTCTTGT  1030

seq1  TAGTTTGTTCAAAACAGGGTTTCACTGTGTAGCCCTGGCTGTCCTGGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGTTCAAAACAGGGTTTCACTGTGTAGCCCTGGCTGTCCTGGAAT  1080

seq1  TC  1101
      ||
seq2  TC  1082

seq1: chr9_30514321_30515478
seq2: B6Ng01-136O04.g_67_1204

seq1  GAATTCTCAGTCAGGTCTAGAATACAACCAGAAATGCTTCTGAGGCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTCAGGTCTAGAATACAACCAGAAATGCTTCTGAGGCCTTC  50

seq1  AGAGACCTTGGGGACTATGAATGTCTCTGAGTCCCCAAATTCACTCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCTTGGGGACTATGAATGTCTCTGAGTCCCCAAATTCACTCCTTA  100

seq1  TATAGTCTCTCAGCCTGTTAGACTTCAGGGGCAGTGGGTCTCCTATGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCTCTCAGCCTGTTAGACTTCAGGGGCAGTGGGTCTCCTATGGTT  150

seq1  CACACCCTCATTTATTACCCACTGTACCCTGAGAAGCAAAGTTCTTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTCATTTATTACCCACTGTACCCTGAGAAGCAAAGTTCTTCCTG  200

seq1  AGTGGGCAGAGATGTCTGTTCCATTTGATTCAAAAACACCATTCTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCAGAGATGTCTGTTCCATTTGATTCAAAAACACCATTCTCATGA  250

seq1  AGATCCAACTCTACTGCTAAGATAACTGATCTTGCTTTACATTTGGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAACTCTACTGCTAAGATAACTGATCTTGCTTTACATTTGGCCCA  300

seq1  ATGGGGCAAAGGGTTGTACACAGGAAAGATTTTCTACATCCCCAAATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAAAGGGTTGTACACAGGAAAGATTTTCTACATCCCCAAATGAC  350

seq1  CAGAACAATTGGCTTCTGACTCTATATTGAGGAAGTAAAACTTTCTGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAATTGGCTTCTGACTCTATATTGAGGAAGTAAAACTTTCTGTAA  400

seq1  AGAAGTCACAGTTCCAGCCCTGATCCACCTGTGCAGACTCCGCACCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCACAGTTCCAGCCCTGATCCACCTGTGCAGACTCCGCACCTAAG  450

seq1  AGGTCCAGAGAATAAACTAGGTATAGGAAAGAAACAGGAGAGGGTAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGAGAATAAACTAGGTATAGGAAAGAAACAGGAGAGGGTAAGGA  500

seq1  GGAAGAAAGATATTTCCTCATACAATGGCTGTGGCCAGGATCCAGTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGATATTTCCTCATACAATGGCTGTGGCCAGGATCCAGTCTGC  550

seq1  TTTTTAAAAACAGTGCTTAATACTGAATACCAAAATTACACAAGATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAACAGTGCTTAATACTGAATACCAAAATTACACAAGATTTCA  600

seq1  GACTCCCCAACCCCCTTCTCTGGATAGATCCCAGTAATTTCCATAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCCAACCCCCTTCTCTGGATAGATCCCAGTAATTTCCATAATGAA  650

seq1  GCAAAACTGAGAAAGACCCTTCAGACCTACTCAAGTCTCCATATAGTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACTGAGAAAGACCCTTCAGACCTACTCAAGTCTCCATATAGTCAT  700

seq1  TTTTTAAACTGCCATCTTTTCCCATTGAATTAGTTATTTTTCTACTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACTGCCATCTTTTCCCATTGAATTAGTTATTTTTCTACTGATG  750

seq1  TGATAAAACACTATGGCCAAGGCAAATTATATATAAAAAAAGCAAGTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAACACTATGGCCAAGGCAAATTATATATAAAAAAAGCAAGTTCT  800

seq1  TCTCAGCCTATTAATTTGGCTTACAA-TTTCAGAGGGTTTAAGAGTACAT  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTCAGCCTATTAATTTGGCTTACAATTTTCAGAGGGTTTAAGAGTACAT  850

seq1  GATGGCAGAGTGAAGGAACAATCTAGAGCTCACATCTTGATCCACAGCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCAGAGTGAAGGAACAATCTAGAGCTCACATCTTGATCCACAGCAT  900

seq1  GAGAGAGAGAGAGAGAGAGAGAACAGTAGAAATAGGAGGAGTCTTTTGAA  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAG-ACAGTAGAAATAGGAGGAGTCTTTTGAA  949

seq1  ATCTCAAAGCCTACCATTAGTGACACATTTACACCAAGGTCATACCTCCT  999
      ||||| ||||||||||||||||||||||||||||| ||||||||||||  
seq2  ATCTC-AAGCCTACCATTAGTGACACATTTACACC-AGGTCATACCTC--  995

seq1  AATCCTTCCAAAACAGTTCTGTCAACCAGGTATCAAGTATTCAAACTTGT  1049
       |||||||| |||||||||||||||||| ||||| ||||||| |||||||
seq2  TATCCTTCC-AAACAGTTCTGTCAACCA-GTATC-AGTATTC-AACTTGT  1041

seq1  GACCACCACACCCAGGCTTTCATGAGCAATATTTTTGTTGGGTAAGGTTT  1099
      || |||||||||||||| |||||||||   ||||||||||||||  | ||
seq2  GA-CACCACACCCAGGC-TTCATGAGC---ATTTTTGTTGGGTA--GGTT  1084

seq1  ATGAAATCCACACTCAAAGGCAACTGCAGTTTCATCTGTAGGAAATAAGT  1149
      ||||| ||||||||| |||||| |||||| | |||||||||  ||| || 
seq2  ATGAATTCCACACTC-AAGGCACCTGCAG-TCCATCTGTAG--AAT-AGA  1129

seq1  ACATGCCTG  1158
       ||||||||
seq2  TCATGCCTG  1138