BAC Information

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BAC

Clone NameB6Ng01-138C07
Chromosome17 (Build37)9 (Build37)
Map Location 11,157,553 - 11,158,63933,026,641 - 33,027,162
singlet/doubletsingletsinglet
Overlap genePark2
Upstream geneQk, LOC675815, Pacrg, LOC100041113
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C07.bB6Ng01-138C07.g
ACCDH937482DH937483
length1,072664
definitionDH937482|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C07, 5' end.DH937483|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,157,553 - 11,158,639)(33,026,641 - 33,027,162)
sequence
gaattcattaataatcctgtgtcacttcaggaaatattatggtgatacaa
atgatccattgcattctaagtaagttaagggaattacctagacacagagc
tgaggaagaacagtatctgaaggaaacctgaatattaggatacaatggct
gctgagaggacagaattatgcagaaggttaactgaggctgagggagcaag
taagattcatgccatttatggccacataaacccagaagacagatttaaac
ttcaatagaaagtggtgggtgggaccaagataagtattactaagggaaga
cttacaatcaacattacatttctgagggtaaagagatatcttagcaggta
atggttcttgttgctgttgaagaagagtagagttcactctctagtaccca
cactgggctgctcataacctgtaactccagctttacgggatctgacaccc
ttttctagcctccatggtcacataggtgaacatgagaatgtatatatgca
atgtgaatgcacatacatgtacatatacacagaaacacacacacacagag
agagagagagagagagagagagagagagagagagagagagagagagagag
agcgcacaaaatcttttttttttaagagtcatatttcatggcaggaaaac
tgcctaaagagtgaacagagaggtgcttctgaggagttctgtcactgaag
ggtcctgccactgaggggtactatcattgtagtgcacacgagatccacaa
cagtctttggtgtgtggtctagaacatggggaacttgggtcacagagggt
tcaagctcatggtgtttgaagaccatagataaccaaggcagatgggctgg
agaagggtttgacaaggacagtcaattactgcttagatagctaacatgta
gcaatgactgtttccctagatgccactatatgatattacaggaaagatct
tctgaagcaggatgctactaggatgtccatagcatcaaataaatctcagg
tgacttgacttctagaattaaaatttgtgttaataaagcaaagtaaagat
gagcgatgactgggaaaatatt
gaattcagaacttttcagctggggaacgagagtaccagtgagtatagctt
tacgaggtaagcctgatcttgaactttctaaggaaattcaagacagtcta
tcagaagtaaagtggaatatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtggttaaggcagggcgga
ttctagatgaaattcaggacaatctatcagaagtaaagcggggagagaga
gtaggagcaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagttaaggttaggtaggaatacctgga
gagagattagaaaaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtagctctgaagcaggtgaagaatcctcctctgagg
aaacagactggaggaagaagcagctcattatgagaaaaaagggtaccagc
caggtaaagtgctagctaatcagttaaggaagccaaagcggctggcgaag
gccagtttgctgatggcctcaggcagtcggcttcaaggtccgccctatgc
ggagtccccgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_11157553_11158639
seq2: B6Ng01-138C07.b_46_1117

seq1  GAATTCATTAATAATCCTGTGTCACTTCAGGAAATATTATGGTGATACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATAATCCTGTGTCACTTCAGGAAATATTATGGTGATACAA  50

seq1  ATGATCCATTGCATTCTAAGTAAGTTAAGGGAATTACCTAGACACAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCCATTGCATTCTAAGTAAGTTAAGGGAATTACCTAGACACAGAGC  100

seq1  TGAGGAAGAACAGTATCTGAAGGAAACCTGAATATTAGGATACAATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGAACAGTATCTGAAGGAAACCTGAATATTAGGATACAATGGCT  150

seq1  GCTGAGAGGACAGAATTATGCAGAAGGTTAACTGAGGCTGAGGGAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAGGACAGAATTATGCAGAAGGTTAACTGAGGCTGAGGGAGCAAG  200

seq1  TAAGATTCATGCCATTTATGGCCACATAAACCCAGAAGACAGATTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCATGCCATTTATGGCCACATAAACCCAGAAGACAGATTTAAAC  250

seq1  TTCAATAGAAAGTGGTGGGTGGGACCAAGATAAGTATTACTAAGGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGAAAGTGGTGGGTGGGACCAAGATAAGTATTACTAAGGGAAGA  300

seq1  CTTACAATCAACATTACATTTCTGAGGGTAAAGAGATATCTTAGCAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAATCAACATTACATTTCTGAGGGTAAAGAGATATCTTAGCAGGTA  350

seq1  ATGGTTCTTGTTGCTGTTGAAGAAGAGTAGAGTTCACTCTCTAGTACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTTGTTGCTGTTGAAGAAGAGTAGAGTTCACTCTCTAGTACCCA  400

seq1  CACTGGGCTGCTCATAACCTGTAACTCCAGCTTTACGGGATCTGACACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCTGCTCATAACCTGTAACTCCAGCTTTACGGGATCTGACACCC  450

seq1  TTTTCTAGCCTCCATGGTCACATAGGTGAACATGAGAATGTATATATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCCTCCATGGTCACATAGGTGAACATGAGAATGTATATATGCA  500

seq1  ATGTGAATGCACATACATGTACATATACACAGAAACACACACACACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  ATGTGAATGCACATACATGTACATATACACAGAAACACACACACAC--AG  548

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  598

seq1  AGAGCGCACAAAATCTTTTTTTTTTAAGAGTCATATTTCATGGCAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGCACAAAATCTTTTTTTTTTAAGAGTCATATTTCATGGCAGGAAA  648

seq1  ACTGCCTAAAGAGTGAACAGAGAGGTGCTTCTGAGGAGTTCTGTCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAAAGAGTGAACAGAGAGGTGCTTCTGAGGAGTTCTGTCACTGA  698

seq1  AGGGTCCTGCCACTGAGGGGTACTATCATTGTAGTGCACACGAGATCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTGCCACTGAGGGGTACTATCATTGTAGTGCACACGAGATCCAC  748

seq1  AACAGTCTTTGGTGTGTGGTCTAGAACATGGGGAACTTGGGTCACAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTTTGGTGTGTGGTCTAGAACATGGGGAACTTGGGTCACAGAGG  798

seq1  GTTCAAGCTCATGGTGTTTGAAGACCATAGATAACCAAGGCAGATGGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGCTCATGGTGTTTGAAGACCATAGATAACCAAGGCAGATGGGCT  848

seq1  GGAGAAGGGTTTGACAAGGACAGTCAATTACTGCTTAGATAGCTAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGGTTTGACAAGGACAGTCAATTACTGCTTAGATAGCTAACATG  898

seq1  TAGCAATGACTGTTTCCCTAGATGCCAACTATATGATATTACAGGAAAGA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGCAATGACTGTTTCCCTAGATGCC-ACTATATGATATTACAGGAAAGA  947

seq1  TCTTCTGAAGCAAGGATGCTACTAGGATGTCCAATAGCATCAAATAAATC  1000
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  TCTTCTGAAGC-AGGATGCTACTAGGATGTCC-ATAGCATCAAATAAATC  995

seq1  CCAGGTTGACTTGACTTCATAGAAATTAAAATTTAGTGTATAATAAAGCA  1050
       |||| |||||||||||| ||| ||||||||||| |||| ||||||||| 
seq2  TCAGG-TGACTTGACTTC-TAG-AATTAAAATTT-GTGT-TAATAAAGC-  1039

seq1  AAAGTAAAAGATGAGCGATGAACTAGGAGAAAATATT  1087
      ||||| |||||||||||||| |||  | |||||||||
seq2  AAAGT-AAAGATGAGCGATG-ACT--GGGAAAATATT  1072

seq1: chr9_33026641_33027162
seq2: B6Ng01-138C07.g_68_502 (reverse)

seq1  GATGAGTATAGGCTCCTTCTCCTAGAAACCTCCGCTGATTGATCTTTTTT  50
      |||||| | ||||||||| ||||||| ||||||||| |||||||||| ||
seq2  GATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCTT  50

seq1  CTTTTCC----TTCC--------TTCTAATCTCTCCCCAGGTATTCTTAC  88
      |||||||    ||||        |||||||||||| |||||||||| |||
seq2  CTTTTCCCTTTTTCCTCTTTTTTTTCTAATCTCTCTCCAGGTATTCCTAC  100

seq1  CTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  138
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  150

seq1  TTATTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTT  188
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTTTGTGTACCATATTTTCTCTTTGCTCCTACTCTCTCTCCCCGCTT  200

seq1  TACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTGCCT  238
      |||||||||||||||| ||||||||||||| ||||   || |||||||||
seq2  TACTTCTGATAGATTGTCCTGAATTTCATCTAGAA---TCCGCCCTGCCT  247

seq1  TAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGA  288
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TAACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACCAGA  297

seq1  GAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTACTTC  338
       ||| ||||||||||||||||               | ||||||||||||
seq2  AAAAATTCAAGGCCAAACATA---------------TTCCACTTTACTTC  332

seq1  TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTT  388
      ||||||||||||||||||||| ||||||||||||||| ||| ||||||| 
seq2  TGATAGACTGTCTTGAATTTCCTTAGAAAGTTCAAGATCAGGCTTACCTC  382

seq1  GTAAAGCTATACTTACTGGTACCCCTATTCCCCAGCTGAAGAGTTCTGAA  438
      ||||||||||||| |||||||| |   ||||||||||||| |||||||||
seq2  GTAAAGCTATACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAA  432

seq1  TTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCAT  488
      |||                                               
seq2  TTC-----------------------------------------------  435

seq1  TACCACCGTTCCCCAGCTGAAGAGTTCTGAATTC  522
                                        
seq2  ----------------------------------  435