BAC Information

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BAC

Clone NameB6Ng01-139K09
Chromosome9 (Build37)
Map Location 95,035,350 - 95,036,349
singlet/doubletsinglet
Overlap geneSlc9a9
Upstream geneEG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K09.bB6Ng01-139K09.g
ACCDH938580DH938581
length1,1801,001
definitionDH938580|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K09, 5' end.DH938581|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatatacagcaaacca
gtagccaacatcaaactaaatggagagaaacttgaagcaatcgcactaaa
atcagagactagacaaggctgactactctctccctacctattcagtatag
tacttgaagtcctagccagagcaattagacaacaaaagaagatcaaagga
atacaaattggaaagaaagaagtcaaaatatcactacttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgatagacaacttcagtgcagtagctggatataaaattaactcaaacaaa
tcagtggcctttctttacacgaaggataaacaggctgagaaagaaattag
ggcaacaacacccttcacaatagtcacaaataatataaaataccttggtg
tgactctaactaaggaagtgaaagatctatatgataagaatttcaagtct
ctgaagaaagaaattgaagatcttagaagatggaaagatctcccatgctc
attgaattaatatagtcaaatggctatcttgccaaaagcaatctacagat
tcaatgcaatccccatcaaaattccaactcaattcttcacagagttagaa
agggcaatttgcaaagtcatctggaataacaaaaaccctaggatagcaaa
aactattattaataataaaagcacctctggtggaatcaccatgtctgacc
tcaagctgtactacagagcaattgtgataaaaactgcatggtactggtac
agtgacagacagataggccaacagaatagaattgaagacccagaaatgaa
cccacacacctatgggtcacttgatctttgacaaaggagctacaacatcc
agtggaaagaagacagcattttcttttttcttcttttctttttttttttt
tttagaaaatttcttcattaccatttcaagtgctatccccctttcctagt
tccctctctgaaaatccgcttataccctcccccttctcttgctccccaac
ccactactccccactcccggccctggcaatggggctgctcactggcggta
gcatgtaaagatgtgaattgacatctactcttatcagctcaggtcaagtg
gatcaggaactctatataaaacaagaatca
gaattcctgtggctggagaacttaaagtgtgtttagaaatttccatgctc
cccactcgtcttgggtttcttgtccttaaaacagaggcaatgacaaagca
tacgttcatgatccacaagatacaaaaatcacctacgatgtcctccaaca
ttgaagggcatacgctccagaagtatctcctgctattatagtggtcagta
attcaaatacagtaattccaaatagttttagttccttagagaccagaaac
tgtaactcctattgagtatgctatactcctagcttttgggaggctgaggc
aggaggatgtgaagtttgaggtcagcctatgaaagaatctgaggaaggaa
gaaagaaagagagaggagggagaaaaagaagagctatgaaattatgctgt
gcattaaagaatggttatgctttccacagtttaatatgagacagaaacac
ttagaggaaacaccatctttagcgtctagcaattcagtcccagacttgac
tccctgctgtttcttgctaactgggtgactgtgttcatggcttcccttct
ctgggggtctctaggtccttaagtgcaaaatagctacaactcaaccaacc
tagatggattgtggtggaaattgaaaaataatgattggaaaaactaatgg
ctggataatgtgacaagcacgctgcctggaagttaatgagcattcaatag
ctaggaactgtcattactgcaaagtcactcagctgggctgttgaagggct
ggcagctgagcctccaaacaccacccagcttacctccttcaacctttctt
taaaaagtctggggacgtggttatggtttcaacactttacttagtgactg
ttacttaattagtaggtgctactccttactttgccatggaaatcaacctt
gcccattgatgggtaaactctccatagtcctctatcttaaggaatctgag
aaaaggagaacagaaagcttcacatttggtacagagcttttgaacttact
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95035350_95036349
seq2: B6Ng01-139K09.g_70_1070

seq1  GAATTCCTGTGGCTGGAGAACTTAAAGTGTGTTTAGAAATTTCCATGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGCTGGAGAACTTAAAGTGTGTTTAGAAATTTCCATGCTC  50

seq1  CCCACTCGTCTTGGGTTTCTTGTCCTTAAAACAGAGGCAATGACAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCGTCTTGGGTTTCTTGTCCTTAAAACAGAGGCAATGACAAAGCA  100

seq1  TACGTTCATGATCCACAAGATACAAAAATCACCTACGATGTCCTCCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTCATGATCCACAAGATACAAAAATCACCTACGATGTCCTCCAACA  150

seq1  TTGAAGGGCATACGCTCCAGAAGTATCTCCTGCTATTATAGTGGTCAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGCATACGCTCCAGAAGTATCTCCTGCTATTATAGTGGTCAGTA  200

seq1  ATTCAAATACAGTAATTCCAAATAGTTTTAGTTCCTTAGAGACCAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATACAGTAATTCCAAATAGTTTTAGTTCCTTAGAGACCAGAAAC  250

seq1  TGTAACTCCTATTGAGTATGCTATACTCCTAGCTTTTGGGAGGCTGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTCCTATTGAGTATGCTATACTCCTAGCTTTTGGGAGGCTGAGGC  300

seq1  AGGAGGATGTGAAGTTTGAGGTCAGCCTATGAAAGAATCTGAGGAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATGTGAAGTTTGAGGTCAGCCTATGAAAGAATCTGAGGAAGGAA  350

seq1  GAAAGAAAGAGAGAGGAGGGAGAAAAAGAAGAGCTATGAAATTATGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAGAGAGGAGGGAGAAAAAGAAGAGCTATGAAATTATGCTGT  400

seq1  GCATTAAAGAATGGTTATGCTTTCCACAGTTTAATATGAGACAGAAACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAAGAATGGTTATGCTTTCCACAGTTTAATATGAGACAGAAACAC  450

seq1  TTAGAGGAAACACCATCTTTAGCGTCTAGCAATTCAGTCCCAGACTTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAAACACCATCTTTAGCGTCTAGCAATTCAGTCCCAGACTTGAC  500

seq1  TCCCTGCTGTTTCTTGCTAACTGGGTGACTGTGTTCATGGCTTCCCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCTGTTTCTTGCTAACTGGGTGACTGTGTTCATGGCTTCCCTTCT  550

seq1  CTGGGGGTCTCTAGGTCCTTAAGTGCAAAATAGCTACAACTCAACCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTCTCTAGGTCCTTAAGTGCAAAATAGCTACAACTCAACCAACC  600

seq1  TAGATGGATTGTGGTGGAAATTGAAAAATAATGATTGGAAAAACTAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGATTGTGGTGGAAATTGAAAAATAATGATTGGAAAAACTAATGG  650

seq1  CTGGATAATGTGACAAGCACGCTGCCTGGAAGTTAATGAGCATTCAATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATAATGTGACAAGCACGCTGCCTGGAAGTTAATGAGCATTCAATAG  700

seq1  CTAGGAACTGTCATTACTGCAAAGTCACTCAGCTGGGCTGTTGAA-GGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAGGAACTGTCATTACTGCAAAGTCACTCAGCTGGGCTGTTGAAGGGCT  750

seq1  GGCAGCTGAGCCTCCAAACACCACCCAGCTTACCTCC-TCAACCTTTCTT  798
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCAGCTGAGCCTCCAAACACCACCCAGCTTACCTCCTTCAACCTTTCTT  800

seq1  TAAAAAAGTCTGGGGACGTGGTTATGGTTTCAACACTTTACTTAGTGACT  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAAAAGTCTGGGGACGTGGTTATGGTTTCAACACTTTACTTAGTGACT  849

seq1  GTTACTTAATTAGTAGGTGCTACTCC-TACTTTGCCATGGAAATCAGCCA  897
      |||||||||||||||||||||||||| ||||||||||||||||||| || 
seq2  GTTACTTAATTAGTAGGTGCTACTCCTTACTTTGCCATGGAAATCAACCT  899

seq1  TGCCCATTGATGGGTAAAACCCCCCAAAGTCCTCATACTTAAGGAAACTG  947
      ||||||||||||||| |||| | ||| |||||||   ||||||||| |||
seq2  TGCCCATTGATGGGT-AAACTCTCCATAGTCCTCTATCTTAAGGAATCTG  948

seq1  AGAAAAGGAG-ACAGAAAGCTTCCACATTTGGTACAGAGCTTTTTGAAC-  995
      |||||||||| ||||||||||| ||||||||||||||||| |||||||| 
seq2  AGAAAAGGAGAACAGAAAGCTT-CACATTTGGTACAGAGC-TTTTGAACT  996

seq1  TACTT  1000
      |||||
seq2  TACTT  1001