BAC Information

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BAC

Clone NameB6Ng01-139L11
Chromosome9 (Build37)
Map Location 84,142,575 - 84,298,425
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
Downstream geneEG666669, LOC666672, BC023892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139L11.bB6Ng01-139L11.g
ACCDH938632DH938633
length1,0381,168
definitionDH938632|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L11, 5' end.DH938633|Mus musculus domesticus DNA, BAC clone: B6Ng01-139L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,142,575 - 84,143,616)(84,297,255 - 84,298,425)
sequence
gaattcacacatgcctgaaaactgttcagaaattccatgttaaaacactt
tctaaacccctgtgggcatcagaggcaatgagatgtgtatgcacgaatgt
gtgtccagcggttgattgtaactaagggaacaaagtcataactaacgagt
taatggaatatagaacactactgttcaacactcagggcagttttctctag
atgcttcttcagtaaaaaaaaaaaattaaaaattggaataaaataggaaa
agttaaaagtatgtctttttccaagtgacttatgtgcataggcttatgaa
attgagatactatttatatcattaatttgagtgctgattataatttggct
gaccaggtcccacaggaaaattaagctagcatgtgtaagaattaatgggg
agtcattcttttgaaggttgtgattaatgtgaatgatattcttgctgtaa
tattttctaaaaataccaaccgtcttatgttaagttaaaatgtgtagctg
tgggtgggtgggggcaccactgaatgctactatggccataatgtggagtg
atccctgtcttatgggtcttctgtatcagtgttatgctcaagtcatcatt
aaaacaaagcaaaacagaacaaaacagaaacaacaaacaaccaaacaaaa
aatcctcaagaattaaacaactggaaacttatcatggcctccctgtttaa
tgccgcatctgtaccaaactcattgaaatctgacataatacccttttttc
ttctttccgttccagttcttgggtatttatatagcaattttggtcatatt
ttggtaatgatgtagatttacagaggcttataacagatgagtcatacaaa
gcttttctttctctccctctcacttttttttctttctttttttttttttt
ttttcatttctggaatcctcttggcttgactttcaaactcagccactatg
gggacataatacagagtgggttttgtttctatttctagagagagtgtagt
gactatggtacttaggacatggggtgtttggatttggg
gaattccagaaccttctgaagatgcagtgttttgactaatactctccttt
tgtgtcctttgctctaattgttgtagtattctcaacaactatttattttc
caaattgtcattggccttctgaaagaactaaagacatttcattaaatgtt
tcatgaagtccttgtgaggagctatcacattacacaaactgacatctgaa
gacagttctaaaagtaaaagataatgagacatgtcacagacaaatatttt
attcctcctgtgcatggcagagaagggaattaatgacatattaaccatat
ttcacagaggactgtgtaacatgtaaacaagaggtatgagacagtataca
aataattaatataatctctaagtatagtcattacacagtcatactatgtt
ttagtttgttacatgtaaatatacctaagcagtttgtgttgatcaaaagt
caaattacttttttgccaatatttggaatttgccaagacttaatgtgaat
tttccattatttataagcccatataaatttcaagaattgtttataagaaa
gatttgaattgttgggaaacttcctactaatggacttgtttataaaagca
ggttaatctctaaaaagatttaatcaattaaacaaatgtttgaggtgatt
tttttcattaaaaggagcattaattctgaactcattgtaatgagtttgat
tttaatccctatttgaccagatttcctgggtagagaatctattccctaag
tgcccactccagccatggaccaaagaagcacttggtgggtgtgtttctaa
agaaactcttgttttgattgggagcgaggtagctaatgtccacagatgtt
cttacttaagagtaacacagatttcaggcaaagaaactcatgcttgctat
gagaacatctttgaaatctaagatcaaacttggggatttactaactaaac
ctataacaaaaactcattattatttctatgtgccttaaaactatttttta
attctacacagtgcctacagtcaaagaacatggtcaaataactattaacc
agctaaagaacaaagagcctctggatagctgctgtcgtccaaaacacaag
aatcaaatccaaatttaatctcaatgacatttttctcgaaaattctatga
tagaagaaaacatttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_84142575_84143616
seq2: B6Ng01-139L11.b_46_1083

seq1  GAATTCACACATGCCTGAAAACTGTTCAGAAATTCCATGTTAAAACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACATGCCTGAAAACTGTTCAGAAATTCCATGTTAAAACACTT  50

seq1  TCTAAACCCCTGTGGGCATCAGAGGCAATGAGATGTGTATGCACGAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACCCCTGTGGGCATCAGAGGCAATGAGATGTGTATGCACGAATGT  100

seq1  GTGTCCAGCGGTTGATTGTAACTAAGGGAACAAAGTCATAACTAACGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAGCGGTTGATTGTAACTAAGGGAACAAAGTCATAACTAACGAGT  150

seq1  TAATGGAATATAGAACACTACTGTTCAACACTCAGGGCAGTTTTCTCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAATATAGAACACTACTGTTCAACACTCAGGGCAGTTTTCTCTAG  200

seq1  ATGCTTCTTCAGTAAAAAAAAAAAATTAAAAATTGGAATAAAATAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTTCAGTAAAAAAAAAAAATTAAAAATTGGAATAAAATAGGAAA  250

seq1  AGTTAAAAGTATGTCTTTTTCCAAGTGACTTATGTGCATAGGCTTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAAGTATGTCTTTTTCCAAGTGACTTATGTGCATAGGCTTATGAA  300

seq1  ATTGAGATACTATTTATATCATTAATTTGAGTGCTGATTATAATTTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGATACTATTTATATCATTAATTTGAGTGCTGATTATAATTTGGCT  350

seq1  GACCAGGTCCCACAGGAAAATTAAGCTAGCATGTGTAAGAATTAATGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGTCCCACAGGAAAATTAAGCTAGCATGTGTAAGAATTAATGGGG  400

seq1  AGTCATTCTTTTGAAGGTTGTGATTAATGTGAATGATATTCTTGCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTCTTTTGAAGGTTGTGATTAATGTGAATGATATTCTTGCTGTAA  450

seq1  TATTTTCTAAAAATACCAACCGTCTTATGTTAAGTTAAAATGTGTAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAAAAATACCAACCGTCTTATGTTAAGTTAAAATGTGTAGCTG  500

seq1  TGGGTGGGTGGGGGCACCACTGAATGCTACTATGGCCATAATGTGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGGTGGGGGCACCACTGAATGCTACTATGGCCATAATGTGGAGTG  550

seq1  ATCCCTGTCTTATGGGTCTTCTGTATCAGTGTTATGCTCAAGTCATCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGTCTTATGGGTCTTCTGTATCAGTGTTATGCTCAAGTCATCATT  600

seq1  AAAACAAAGCAAAACAGAACAAAACAGAAACAACAAACAACCAAACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCAAAACAGAACAAAACAGAAACAACAAACAACCAAACAAAA  650

seq1  AATCCTCAAGAATTAAACAACTGGAAACTTATCATGGCCTCCCTGTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCAAGAATTAAACAACTGGAAACTTATCATGGCCTCCCTGTTTAA  700

seq1  TGCCGCATCTGTACCAAACTCATTGAAATCTGACATAATACCCTTTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCATCTGTACCAAACTCATTGAAATCTGACATAATACCCTTTTTTC  750

seq1  TTCTTTCCGTTCCAGTTCTTGGGTATTTATATAGCAATTTTGGTCATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCGTTCCAGTTCTTGGGTATTTATATAGCAATTTTGGTCATATT  800

seq1  TTGGTAATGATGTAGATTTACAGAGGCTTATAACAGATGAGTCATACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGGTAATGATGTAGATTTACAGAGGCTTATAACAGATGAGTCATAC-AA  849

seq1  AGCTTTTCTTTCTCTCCCTCTCACTTTTTTTTCTTTCTTTTTTTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCTTTCTCTCCCTCTCACTTTTTTTTCTTTCTTTTTTTTTTTTT  899

seq1  TTTTTCATTTCTGGAATCCTCTTGGCTTGACTTTCAAAACTCAGCCACTA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTCATTTCTGGAATCCTCTTGGCTTGACTTTC-AAACTCAGCCACTA  948

seq1  ATGGGACATAAATACAGAGT-GGTTCTGTTTCTATTTCTAGAGGAGAGTG  999
        ||||||| |||||||||| |||| |||||||||||||||| |||||||
seq2  TGGGGACAT-AATACAGAGTGGGTTTTGTTTCTATTTCTAGA-GAGAGTG  996

seq1  TAGTGACTATGGTACTTAAGACATGGGGGTGTTTGGATTTGGG  1042
      |||||||||||||||||| ||||| ||||||||||||||||||
seq2  TAGTGACTATGGTACTTAGGACAT-GGGGTGTTTGGATTTGGG  1038

seq1: chr9_84297255_84298425
seq2: B6Ng01-139L11.g_71_1238 (reverse)

seq1  TTTAAAAATATTTTTCATCTATTCATAGAATTATTCAGAAAAAATGTCAT  50
      ||||||     ||||| |||| |||||||||| |||   |||||||||||
seq2  TTTAAA---TGTTTTCTTCTA-TCATAGAATT-TTCGAGAAAAATGTCAT  45

seq1  TAGAATTAAAATGTAGAATTTGA-TCTT-TGTTTTGGACAGCAGCAGCTA  98
      |   ||||||   | | |||||| |||| ||||||||||  |||||||||
seq2  TGAGATTAAA--TTTGGATTTGATTCTTGTGTTTTGGACGACAGCAGCTA  93

seq1  T-CAGAGCTTCTT--GTCTTTAGCTTGTTAATAG-TATTTGTTCATGTCT  144
      | |||||  ||||   ||||||||| |||||||| ||||||  |||||  
seq2  TCCAGAGGCTCTTTGTTCTTTAGCTGGTTAATAGTTATTTGACCATGTTC  143

seq1  TTTGAACTGTA-GCACTGTGTAGAATTAAAAAAATAGTTTTAAGGCACAT  193
      |||| |||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TTTG-ACTGTAGGCACTGTGTAGAATT-AAAAAATAGTTTTAAGGCACAT  191

seq1  AGAAAATAATTATGAAGTTTTTGTTATAGGTTTATGTTAGTAAAT-CCCA  242
      || ||||||| ||| ||||||||||||||||||| |||||||||| ||||
seq2  AG-AAATAATAATG-AGTTTTTGTTATAGGTTTA-GTTAGTAAATCCCCA  238

seq1  AGTTTGATCTTAAGATTTC-AAGATGTTCTCATAGCAAGCATGAGTTTCT  291
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  AGTTTGATCTT-AGATTTCAAAGATGTTCTCATAGCAAGCATGAGTTTCT  287

seq1  TTGCCTGAAATCTGTGTTACTCTTAAGTAAGAACATCTGTGGACATTAGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGAAATCTGTGTTACTCTTAAGTAAGAACATCTGTGGACATTAGC  337

seq1  TACCTCGCTCCCAATC-AAACAAGAGTTTCTTTAGGAACACACCCACCAA  390
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TACCTCGCTCCCAATCAAAACAAGAGTTTCTTTAGAAACACACCCACCAA  387

seq1  GTGCTTCTTTGGTCCATGGCTGGAGTGGGCACTTAGGGAATAGATTCTCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTTTGGTCCATGGCTGGAGTGGGCACTTAGGGAATAGATTCTCT  437

seq1  ACCCAGGAAATCTGGTCAAATAGGGATTAAAATCAAACTCATTACAATGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAAATCTGGTCAAATAGGGATTAAAATCAAACTCATTACAATGA  487

seq1  GTTCAGAATTAATGCTCCTTTTAATGAAAAAAATCACCTCAAACATTTGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAATTAATGCTCCTTTTAATGAAAAAAATCACCTCAAACATTTGT  537

seq1  TTAATTGATTAAATCTTTTTAGAGATTAACCTGCTTTTATAAACAAGTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGATTAAATCTTTTTAGAGATTAACCTGCTTTTATAAACAAGTCC  587

seq1  ATTAGTAGGAAGTTTCCCAACAATTCAAATCTTTCTTATAAACAATTCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAGGAAGTTTCCCAACAATTCAAATCTTTCTTATAAACAATTCTT  637

seq1  GAAATTTATATGGGCTTATAAATAATGGAAAATTCACATTAAGTCTTGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTATATGGGCTTATAAATAATGGAAAATTCACATTAAGTCTTGGC  687

seq1  AAATTCCAAATATTGGCAAAAAAGTAATTTGACTTTTGATCAACACAAAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAAATATTGGCAAAAAAGTAATTTGACTTTTGATCAACACAAAC  737

seq1  TGCTTAGGTATATTTACATGTAACAAACTAAAACATAGTATGACTGTGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGGTATATTTACATGTAACAAACTAAAACATAGTATGACTGTGTA  787

seq1  ATGACTATACTTAGAGATTATATTAATTATTTGTATACTGTCTCATACCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATACTTAGAGATTATATTAATTATTTGTATACTGTCTCATACCT  837

seq1  CTTGTTTACATGTTACACAGTCCTCTGTGAAATATGGTTAATATGTCATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTACATGTTACACAGTCCTCTGTGAAATATGGTTAATATGTCATT  887

seq1  AATTCCCTTCTCTGCCATGCACAGGAGGAATAAAATATTTGTCTGTGACA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCTTCTCTGCCATGCACAGGAGGAATAAAATATTTGTCTGTGACA  937

seq1  TGTCTCATTATCTTTTACTTTTAGAACTGTCTTCAGATGTCAGTTTGTGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATTATCTTTTACTTTTAGAACTGTCTTCAGATGTCAGTTTGTGT  987

seq1  AATGTGATAGCTCCTCACAAGGACTTCATGAAACATTTAATGAAATGTCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATAGCTCCTCACAAGGACTTCATGAAACATTTAATGAAATGTCT  1037

seq1  TTAGTTCTTTCAGAAGGCCAATGACAATTTGGAAAATAAATAGTTGTTGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTTTCAGAAGGCCAATGACAATTTGGAAAATAAATAGTTGTTGA  1087

seq1  GAATACTACAACAATTAGAGCAAAGGACACAAAAGGAGAGTATTAGTCAA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTACAACAATTAGAGCAAAGGACACAAAAGGAGAGTATTAGTCAA  1137

seq1  AACACTGCATCTTCAGAAGGTTCTGGAATTC  1171
      |||||||||||||||||||||||||||||||
seq2  AACACTGCATCTTCAGAAGGTTCTGGAATTC  1168