BAC Information

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BAC

Clone NameB6Ng01-142I02
Chromosome9 (Build37)
Map Location 32,383,807 - 32,496,863
singlet/doubletdoublet
Overlap geneLOC669759, LOC100041398
Upstream geneEG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1
Downstream geneEts1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142I02.bB6Ng01-142I02.g
ACCDH940688DH940689
length9091,100
definitionDH940688|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I02, 5' end.DH940689|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,495,955 - 32,496,863)(32,383,807 - 32,384,932)
sequence
gaattcacaggaattccagccttatcataattaacactaataacttcaaa
tctagatggtgtgtgtgtgtatgtctagaatatgagttccatgaatatgt
agagacataaatcttgaaaagcaactttaggtgtccagtgtgtcagtgta
tcagaataattactcatattgttttttttttttttatttcccaagtacct
cccaatatggcacccctgtaaaactgacagatgaaaaccagcctcaaaag
ggaatatgtcagctttgctcatatcacagttcacgctggatgctatatca
tgatgctcaaagagagagagatgtgaagtcctgcttaatcttcagagaac
cagctgtgcttcctccacaccaagcctcagcctgaagatggaatcagaat
gaagtggaaaacacagccattgatgtacagctctgctcagccctcgggat
tggctcccacacactgaacctcctttttccttggagagagtgaagaggag
agaagcaaagccttgccttctagtgtgtcaagcttgtgaagtcacacgtg
ttcaagagctctgggcttagagtggtaactccagagaggagaggtagaga
agaaagaagaaaccatccagaagttccttcctcatggaaatgcttttcat
cagggatctgaaacacatgttccccgagattgggaaaccagcctggaaga
gttcttcacaaaggggccttgggtgggaagcaccccaagggacccattgg
gagagggaggagcacagctgagtggggagctggcagctgactggtaggaa
agaacaaaaggcagccagctctcatgtggcagttccaggagaaatccttt
ccaggaattctaaataatgtgattgatgtatatgtatatgtatatgtatg
gtgtatgtg
gaattcagactggcttacgggtttagaggtttgatccatcatggcaggaa
gcatggcagcatccaggaagacatagtgctggaggggccaagggttctac
atcttgatccaaaagcagcagaaggggactttgttccacactgggcagaa
cttgcaaacatggaaccttaaagctcacccccacagtggcacactttctc
caacaaggccacacctcttaatagtgccattcccatgggccaaacattca
aacacatgagtctagggggaccacatctattcagagtgccagagtcaatg
gcagtgaccagacccaaaacactggaatctctcagcgttagacccagata
ttgtaataattcatacacttgctctccctgagttcttgctccctgtgata
gctgggtaatatagtttacactgcattgtctctattaaagccacttctga
catcagtagttcatggaacgagggtgagaagaactactcgggctcagttt
cacagggaattaattcctggaggcacttgctgcctgctccagtccctgac
gtcaggcttcctccggcactgtgttttctgaatgctcccatagctgagga
cattctcttacatctcacacttgtttggccctactgttcttcctccagag
ttattttgccaatattgatatccctcttgggcccactccaggtaacacag
tgtgtttcccatcatgaagcactttgttgctgattgtatcaggggtatgg
tgaacatttttggtctcgggctattttttctcctctccccatcaagacac
ttacacttaggtgggattcagggtgtcgctcatgtttgagcctttctgat
ttgttctcaggaacactgctgggcagatgcagacctgcaggcatttgtaa
tcaccagctccaacatgagtatgggaactgtgtttcatcaggactcctcc
tagaatgtatatgttcatttctcaatgtccctgcatgcagtctatttctt
cctgtgtcatattagtctgcttatcccttgaatcacccacatctgcatat
ttactatgcctccctcctccgttgttctagcattcgctgacccatgtcag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32495955_32496863
seq2: B6Ng01-142I02.b_43_951 (reverse)

seq1  CACATACA-CATACATATACATATACATATACATCAATCACATTATTTAG  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACCATACATATACATATACATATACATCAATCACATTATTTAG  50

seq1  AATTCCTGGAAAGGATTTTCTCCTGGAACTGCCACATGAGAGCTGGCTGC  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTCCTGGAAAGGA-TTTCTCCTGGAACTGCCACATGAGAGCTGGCTGC  99

seq1  CTTTTGTTCTTTCCTACCAGTCAGCTGCCAGCTCCCCACTCAGCTGTGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCTTTCCTACCAGTCAGCTGCCAGCTCCCCACTCAGCTGTGCT  149

seq1  CCTCCCTCTCCCAATGGGTCCCTTGGGGTGCTTCCCACCCAAGGCCCCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTCCCAATGGGTCCCTTGGGGTGCTTCCCACCCAAGGCCCCTT  199

seq1  TGTGAAGAACTCTTCCAGGCTGGTTTCCCAATCTCGGGGAACATGTGTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGAACTCTTCCAGGCTGGTTTCCCAATCTCGGGGAACATGTGTTT  249

seq1  CAGATCCCTGATGAAAAGCATTTCCATGAGGAAGGAACTTCTGGATGGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCTGATGAAAAGCATTTCCATGAGGAAGGAACTTCTGGATGGTT  299

seq1  TCTTCTTTCTTCTCTACCTCTCCTCTCTGGAGTTACCACTCTAAGCCCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCTTCTCTACCTCTCCTCTCTGGAGTTACCACTCTAAGCCCAG  349

seq1  AGCTCTTGAACACGTGTGACTTCACAAGCTTGACACACTAGAAGGCAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGAACACGTGTGACTTCACAAGCTTGACACACTAGAAGGCAAGG  399

seq1  CTTTGCTTCTCTCCTCTTCACTCTCTCCAAGGAAAAAGGAGGTTCAGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCTCTCCTCTTCACTCTCTCCAAGGAAAAAGGAGGTTCAGTGT  449

seq1  GTGGGAGCCAATCCCGAGGGCTGAGCAGAGCTGTACATCAATGGCTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCCAATCCCGAGGGCTGAGCAGAGCTGTACATCAATGGCTGTGT  499

seq1  TTTCCACTTCATTCTGATTCCATCTTCAGGCTGAGGCTTGGTGTGGAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTTCATTCTGATTCCATCTTCAGGCTGAGGCTTGGTGTGGAGGA  549

seq1  AGCACAGCTGGTTCTCTGAAGATTAAGCAGGACTTCACATCTCTCTCTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTGGTTCTCTGAAGATTAAGCAGGACTTCACATCTCTCTCTCT  599

seq1  TTGAGCATCATGATATAGCATCCAGCGTGAACTGTGATATGAGCAAAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATCATGATATAGCATCCAGCGTGAACTGTGATATGAGCAAAGCT  649

seq1  GACATATTCCCTTTTGAGGCTGGTTTTCATCTGTCAGTTTTACAGGGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTCCCTTTTGAGGCTGGTTTTCATCTGTCAGTTTTACAGGGGTG  699

seq1  CCATATTGGGAGGTACTTGGGAAATAAAAAAAAAAAAAACAATATGAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGGGAGGTACTTGGGAAATAAAAAAAAAAAAAACAATATGAGTA  749

seq1  ATTATTCTGATACACTGACACACTGGACACCTAAAGTTGCTTTTCAAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTGATACACTGACACACTGGACACCTAAAGTTGCTTTTCAAGAT  799

seq1  TTATGTCTCTACATATTCATGGAACTCATATTCTAGACATACACACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTCTACATATTCATGGAACTCATATTCTAGACATACACACACAC  849

seq1  ACCATCTAGATTTGAAGTTATTAGTGTTAATTATGATAAGGCTGGAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTAGATTTGAAGTTATTAGTGTTAATTATGATAAGGCTGGAATTC  899

seq1  CTGTGAATTC  909
      ||||||||||
seq2  CTGTGAATTC  909

seq1: chr9_32383807_32384932
seq2: B6Ng01-142I02.g_67_1166

seq1  GAATTCAGACTGGCTTACGGGTTTAGAGGTTTGATCCATCATGGCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTGGCTTACGGGTTTAGAGGTTTGATCCATCATGGCAGGAA  50

seq1  GCATGGCAGCATCCAGGAAGACATAGTGCTGGAGGGGCCAAGGGTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCAGCATCCAGGAAGACATAGTGCTGGAGGGGCCAAGGGTTCTAC  100

seq1  ATCTTGATCCAAAAGCAGCAGAAGGGGACTTTGTTCCACACTGGGCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATCCAAAAGCAGCAGAAGGGGACTTTGTTCCACACTGGGCAGAA  150

seq1  CTTGCAAACATGGAACCTTAAAGCTCACCCCCACAGTGGCACACTTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAACATGGAACCTTAAAGCTCACCCCCACAGTGGCACACTTTCTC  200

seq1  CAACAAGGCCACACCTCTTAATAGTGCCATTCCCATGGGCCAAACATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCCACACCTCTTAATAGTGCCATTCCCATGGGCCAAACATTCA  250

seq1  AACACATGAGTCTAGGGGGACCACATCTATTCAGAGTGCCAGAGTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGAGTCTAGGGGGACCACATCTATTCAGAGTGCCAGAGTCAATG  300

seq1  GCAGTGACCAGACCCAAAACACTGGAATCTCTCAGCGTTAGACCCAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACCAGACCCAAAACACTGGAATCTCTCAGCGTTAGACCCAGATA  350

seq1  TTGTAATAATTCATACACTTGCTCTCCCTGAGTTCTTGCTCCCTGTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATAATTCATACACTTGCTCTCCCTGAGTTCTTGCTCCCTGTGATA  400

seq1  GCTGGGTAATATAGTTTACACTGCATTGTCTCTATTAAAGCCACTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTAATATAGTTTACACTGCATTGTCTCTATTAAAGCCACTTCTGA  450

seq1  CATCAGTAGTTCATGGAACGAGGGTGAGAAGAACTACTCGGGCTCAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTAGTTCATGGAACGAGGGTGAGAAGAACTACTCGGGCTCAGTTT  500

seq1  CACAGGGAATTAATTCCTGGAGGCACTTGCTGCCTGCTCCAGTCCCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAATTAATTCCTGGAGGCACTTGCTGCCTGCTCCAGTCCCTGAC  550

seq1  GTCAGGCTTCCTCCGGCACTGTGTTTTCTGAATGCTCCCATAGCTGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTTCCTCCGGCACTGTGTTTTCTGAATGCTCCCATAGCTGAGGA  600

seq1  CATTCTCTTACATCTCACACTTGTTTGGCCCTACTGTTCTTCCTCCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTTACATCTCACACTTGTTTGGCCCTACTGTTCTTCCTCCAGAG  650

seq1  TTATTTTGCCAATATTGATATCCCTCTTGGGCCCACTCCAGGTAACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGCCAATATTGATATCCCTCTTGGGCCCACTCCAGGTAACACAG  700

seq1  TGTGTTTCCCATCATGAAGCACTTTGTTGCTGATTGTATCAGGGGTATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCCATCATGAAGCACTTTGTTGCTGATTGTATCAGGGGTATGG  750

seq1  TGAACATTTTTGGTCTCGGGCTATTTTTTCTCCTCTCCCCATCAAGACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTTGGTCTCGGGCTATTTTTTCTCCTCTCCCCATCAAGACAC  800

seq1  TTACACTTAGGTGGGATTCAGGGTGTCGCTCATGTTTGAGCCTTTCTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTAGGTGGGATTCAGGGTGTCGCTCATGTTTGAGCCTTTCTGAT  850

seq1  TTGTTCTCAGGAACACTGCTGGGCAGATGCAAGACCTGCAGGCATTTGTA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGTTCTCAGGAACACTGCTGGGCAGATGC-AGACCTGCAGGCATTTGTA  899

seq1  ATCACCAGCTCCAACATGAGTATGGGAACTGTGTTTTCATCAGGGACTCC  950
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  ATCACCAGCTCCAACATGAGTATGGGAACTGTG-TTTCATCA-GGACTCC  947

seq1  TCCTAGAATGTATATGTTCATTTCTCAATGGTCCCTTGCAATTGCAGTCC  1000
      ||||||||||||||||||||||||||||| ||||| ||||  |||||| |
seq2  TCCTAGAATGTATATGTTCATTTCTCAAT-GTCCC-TGCA--TGCAGT-C  992

seq1  TATTTCTTTCCTGTGTTCAATATTAGTCTGCTTATTCCCTTGAAATCACC  1050
      |||||| |||||||||   ||||||||||||||| ||||||| |||||||
seq2  TATTTC-TTCCTGTGT--CATATTAGTCTGCTTA-TCCCTTG-AATCACC  1037

seq1  CACCATCTTGCATATTTTTTTCTATGTCTCTTCCCTCCTCCCGTATGTTC  1100
      || |||| ||||||   ||| |||||   | |||||||| |||| |||||
seq2  CA-CATC-TGCATA---TTTACTATG---CCTCCCTCCT-CCGT-TGTTC  1077

seq1  TAGCATTTCGCTGACCCCATTGTCAG  1126
      ||||| |||||||||||   ||||||
seq2  TAGCA-TTCGCTGACCC--ATGTCAG  1100