BAC Information

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BAC

Clone NameB6Ng01-142I24
Chromosome9 (Build37)
Map Location 60,637,275 - 60,793,033
singlet/doubletdoublet
Overlap geneUaca, ENSMUSG00000052143
Upstream geneMyo9a, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447
Downstream geneA430102L10, LOC100040481, Tle3, LOC100039851, Rplp1, Kif23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142I24.bB6Ng01-142I24.g
ACCDH940729DH940730
length470983
definitionDH940729|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I24, 5' end.DH940730|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,792,558 - 60,793,033)(60,637,275 - 60,638,264)
sequence
cagcagagggctgacttatggctgtgagagaacaccataaccaagagcac
cttgaagaggaaaggatttatttctgcttcagtgtagtccagcatgaagg
gaagggagtcaggacaggaactgttgcagaggtcacagggatgctgctta
ctggctcttacccttgacttgctcattgtgcttttgtacatatcccaggt
tacccaagggtggcattgtctacagtcaactatgccactttccaccaatc
ttatagtcaagaaaatgcctccacaggctaatctgatagggggatgcttc
ttaattgagtgtccctcttctcagatgaccctagtttggataaagttgac
caaaatctacccagcataggggccggcagcaggggctgacagaagctgga
gattcaggagttggcttgggccaggagagacttcatttgaactaccagga
aagaagagtggggaggaagg
gaattcactctgtagaccaggctggctttgagctcagagatctgcttgcc
tctacctcctgagtgctgggattaaaggcatgagccatcatcacttggct
actaaaacactttttacagtgcatcactcgggggctagagagatagcttt
gtggttaagaggacttgttgctcttctagaggacccaagttcagttccca
gcatccatgttgggcagttcacaatggcctataactgcacctccaggaga
tctgatgatgtcttcttctggcttctttgggcatctgtgcacacaggcat
attcacctacacagaactaaaaaaaaaatattttaagtgcattgtccttt
cgatttacatatattgctaaaaggcaaaccttaattaaaactggcttctg
tagatttagtataataaataattttttgaaagttttctctgaagatgtgt
gtgtgtgtatgtgtgtgtgtgtttcaagacagggtttctctattttagtt
ctggctgtcctgaaacaaactctgtagaccaggttggccttgaactcaca
gagatcctttgcctctgcctctgcctctgcctctgcctctgcctctgcct
ctgcctctgcctctgcctctgcctctgcctctgcctctgccctctgcctc
tgcctctgcctctgcctctgcctctgcctctgcctctgcttctgcctcct
gagtgctgggattaaaggtgtgttccaccattgcctggctaaaataaatt
tttttaaaagcaagagtaatgaaccaaaccataccaagcctgtctggcta
aatgctgatatagtggctcaacttcacacaggatgattctagatcaacca
ggaactgtgcttcttattcaaagttgtgctctttacttggttgctcacaa
tggagcgagcagacatcagcttatcaagtttctagactggaaaattccaa
ggcactggacatagacacaatggggactcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60792558_60793033
seq2: B6Ng01-142I24.b_50_525 (reverse)

seq1  CCTTCCTCCCCACTCTTCTTTCCTGGTAGTTCAAATGAAGTCTCTCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCCCCACTCTTCTTTCCTGGTAGTTCAAATGAAGTCTCTCCTGG  50

seq1  CCCAAGCCAACTCCTGAATCTCCAGCTTCTGTCAGCCCCTGCTGCCGGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCCAACTCCTGAATCTCCAGCTTCTGTCAGCCCCTGCTGCCGGCC  100

seq1  CCTATGCTGGGTAGATTTTGGTCAACTTTATCCAAACTAGGGTCATCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTGGGTAGATTTTGGTCAACTTTATCCAAACTAGGGTCATCTGA  150

seq1  GAAGAGGGACACTCAATTAAGAAGCATCCCCCTATCAGATTAGCCTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGACACTCAATTAAGAAGCATCCCCCTATCAGATTAGCCTGTGG  200

seq1  AGGCATTTTCTTGACTATAAGATTGGTGGAAAGTGGCATAGTTGACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTCTTGACTATAAGATTGGTGGAAAGTGGCATAGTTGACTGTA  250

seq1  GACAATGCCACCCTTGGGTAACCTGGGATATGTACAAAAGCACAATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCCACCCTTGGGTAACCTGGGATATGTACAAAAGCACAATGAGC  300

seq1  AAGTCAAGGGTAAGAGCCAGTAAGCAGCATCCCTGTGACCTCTGCAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAGGGTAAGAGCCAGTAAGCAGCATCCCTGTGACCTCTGCAACAG  350

seq1  TTCCTGTCCTGACTCCCTTCCCTTCATGCTGGACTACACTGAAGCAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCCTGACTCCCTTCCCTTCATGCTGGACTACACTGAAGCAGAAA  400

seq1  TAAATCCTTTCCTCTTCAAGGTGCTCTTGGTTATGGTGTTCTCTCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTTTCCTCTTCAAGGTGCTCTTGGTTATGGTGTTCTCTCACAGC  450

seq1  CATAAGTCAGCCCTCTGCTGGAATTC  476
      ||||||||||||||||||||||||||
seq2  CATAAGTCAGCCCTCTGCTGGAATTC  476

seq1: chr9_60637275_60638264
seq2: B6Ng01-142I24.g_67_1049

seq1  GAATTCACTCTGTAGACCAGGCTGGCTTTGAGCTCAGAGATCTGCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCTTTGAGCTCAGAGATCTGCTTGCC  50

seq1  TCTACCTCCTGAGTGCTGGGATTAAAGGCATGAGCCATCATCACTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCTGAGTGCTGGGATTAAAGGCATGAGCCATCATCACTTGGCT  100

seq1  ACTAAAACACTTTTTACAGTGCATCACTCGGGGGCTAGAGAGATAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACACTTTTTACAGTGCATCACTCGGGGGCTAGAGAGATAGCTTT  150

seq1  GTGGTTAAGAGGACTTGTTGCTCTTCTAGAGGACCCAAGTTCAGTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAGGACTTGTTGCTCTTCTAGAGGACCCAAGTTCAGTTCCCA  200

seq1  GCATCCATGTTGGGCAGTTCACAATGGCCTATAACTGCACCTCCAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATGTTGGGCAGTTCACAATGGCCTATAACTGCACCTCCAGGAGA  250

seq1  TCTGATGATGTCTTCTTCTGGCTTCTTTGGGCATCTGTGCACACAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGATGTCTTCTTCTGGCTTCTTTGGGCATCTGTGCACACAGGCAT  300

seq1  ATTCACCTACACAGAACTAAAAAAAAAATATTTTAAGTGCATTGTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTACACAGAACTAAAAAAAAAATATTTTAAGTGCATTGTCCTTT  350

seq1  CGATTTACATATATTGCTAAAAGGCAAACCTTAATTAAAACTGGCTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTACATATATTGCTAAAAGGCAAACCTTAATTAAAACTGGCTTCTG  400

seq1  TAGATTTAGTATAATAAATAATTTTTTGAAAGTTTTCTCTGAAGATGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTAGTATAATAAATAATTTTTTGAAAGTTTTCTCTGAAGATGTGT  450

seq1  GTGTGTGTATGTGTGTGTGTGTTTCAAGACAGGGTTTCTCTATTTTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGTGTGTGTTTCAAGACAGGGTTTCTCTATTTTAGTT  500

seq1  CTGGCTGTCCTGAAACAAACTCTGTAGACCAGGTTGGCCTTGAACTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGAAACAAACTCTGTAGACCAGGTTGGCCTTGAACTCACA  550

seq1  GAGATCC-TTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  599
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTTTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCT  600

seq1  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG-CCTCTGCCTC  648
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCCTCTGCCTC  650

seq1  TGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCTTCTGCCTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCTTCTGCCTCCT  700

seq1  GAGTGCTGGGATTAAAGGTGTGTTCCACCATTGCCTGGCTAAAATAAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGTGTGTTCCACCATTGCCTGGCTAAAATAAATT  750

seq1  TTTTTAAAAGCAAGAGTAATGAACCAAACCATACCAAGCCTGTCTGGCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAGCAAGAGTAATGAACCAAACCATACCAAGCCTGTCTGGCTA  800

seq1  AATGCTGATAATAGTGGCTCAACTTCACACAGGATGATTCTAGATCAACC  848
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  AATGCTGAT-ATAGTGGCTCAACTTCACACAGGATGATTCTAGATCAA-C  848

seq1  CAGGAAACTGTGCTTCTTATTCAAAGTTGTGCTCTTTACTTGGTTGCTCA  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGG-AACTGTGCTTCTTATTCAAAGTTGTGCTCTTTACTTGGTTGCTCA  897

seq1  CAAATGGGAGCGAGCAGACATCAGC-TATCAAGTTTCTAGACTGGAAAAA  947
      |||   ||||||||||||||||||| ||||||||||||||||||||||| 
seq2  CAA--TGGAGCGAGCAGACATCAGCTTATCAAGTTTCTAGACTGGAAAAT  945

seq1  TCCCAAAAGGCCACTGGACATAGACACCATGGGGACATCATGC  990
      |||   |||| |||||||||||||||| |||||||| ||||||
seq2  TCC---AAGG-CACTGGACATAGACACAATGGGGAC-TCATGC  983