BAC Information

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BAC

Clone NameB6Ng01-142K09
Chromosome9 (Build37)
Map Location 76,680,324 - 76,681,431
singlet/doubletsinglet
Overlap genenone
Upstream geneBmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142K09.bB6Ng01-142K09.g
ACCDH940789DH940790
length1,2681,085
definitionDH940789|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K09, 5' end.DH940790|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccccagttttaaatagttatttggttct
ctggagtctaacttcttgagttctttgtatgtattggatattagtcctct
atatgatgtaaggttggtaaagatcttttcccaatctgttggatgctgtt
ttgtcttattgacagtgtcctatgctttacagaagctttgcaattttatg
agatcccatttgtaaattcttgatcttagagcataagccattggtgttct
gatcaggaatttcccccctgtgcccatgtgttcaaggctcttccccacat
tcttttctactagtttcagtgtatcttgtttcatgtggagatccttgacc
cacttggacttgagcattgtacaaggagataagaatggatccattttcat
tcctctatatgctaactgccagttgaaccagcaccatttgttgaaaatgc
tgtctttttttctgctggatggatttagctcctttgccaaagaacaagtg
gccataggtgtgtgggttcatttctgggtcttcaattcaaagtgtggaga
cttcagtccttcttagaagggggatcaaaatacccatgggaggagataca
gagagaaagtgtggagcaggaactgaaggaaaggccatccagtcactgtc
ccacctggggatccatcctatatacagttaccaaacccagacactattgt
agatgccaactttctttatgaagattatgtcacctcaagtgtgataattt
cctgattacatatttgtttctcctttgggattttttttcactaattagaa
gggtctcagaaaaacagaaatttggggcatgtggtcaagaaaaaagttga
catagatgtagaaaagagtttatggggtcttttggttagaaggatttgtg
gagtttttggtcatccaaagtcaaagggagctttattttcaaagcccttt
attttctcatcaggaaacaacatgacttaacttttaagaacagccactct
tttgtgatgctgagagaataaaattttgtagttgaatttagaagaatttc
aaatagcaactaatgtacgagactttggaagttaatgcagatgggtgaag
agattcctcagcagttagagtgctgctgctcttgcgaagaacaggctcac
gccacttatcgcacacgaaatctgaacatctctcctccagacttcatagt
catcatttataacgcctatcacgaagtgaactttgaaataatatgcggaa
gaaggtaccagtgggtgc
gaattcccagttctaattacctaatcaattctctttaaatgtttacagcg
ttgactggcttctatttctcaccaggatataagaacttctgaagaacatg
ttctctgaatattgaaaagcctcaaaaccataatgctatctgagacaact
atcttcagacaatggctatagtgcagtcctcttggagaaaaaaagaagtc
agaactatgacttctcaggaagcacttttttaaactactgtggtggtttc
agtaagaaaactgccccataatgttggacatttcacctcttgccatgcta
tcttatcaacgtggtagaaaactaacaaatgccaagaatacactgagagg
tgaagctcaaatagtgacgaacctgctcatgataaagaagcagagatcag
acctcaggaccagagaagtattcaaagttcgttggatagaaaccaaagaa
gcactgccttcacataggtcaccctagttatctctatgtgcctttgttgt
ttaatactagactgcatatatgcaaggcagatttccattgttcccaccaa
ggaatacttgcagtgggtggaaatgttaaacagactacagaggacacgta
gggttaagggataatagaattcttctctagtcagaatagacaccttaata
atgaccttgattattattttctaaaatctggaaagaatatgctttaagat
ttaaaatcctcttgcctcctccactattgcacatatgtgtgaatatatct
gcactcactttgcatacacatgcacacataccccacacacatggagaaca
actgaatgaactgagatccccactaaaccctgagtggaaacattacatta
tgggttatgcagttaaatatacttggtattaagaaaaacagaaataataa
agtgagacgcagcatcatgtgaaagcttgtgaatgaaaatgtcaacacac
tattctcttctaatggcagtcagcaattagctgtgctacagaaaaataga
atatttgaggatgattatgtaaatactagttgtagatgcttacatggatg
ccatagccctggttccctcctccgaccatctatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76680324_76681431
seq2: B6Ng01-142K09.g_69_1153

seq1  GAATTCCCAGTTCTAATTACCTAATCAATTCTCTTTAAATGTTTACAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGTTCTAATTACCTAATCAATTCTCTTTAAATGTTTACAGCG  50

seq1  TTGACTGGCTTCTATTTCTCACCAGGATATAAGAACTTCTGAAGAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGGCTTCTATTTCTCACCAGGATATAAGAACTTCTGAAGAACATG  100

seq1  TTCTCTGAATATTGAAAAGCCTCAAAACCATAATGCTATCTGAGACAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAATATTGAAAAGCCTCAAAACCATAATGCTATCTGAGACAACT  150

seq1  ATCTTCAGACAATGGCTATAGTGCAGTCCTCTTGGAGAAAAAAAGAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGACAATGGCTATAGTGCAGTCCTCTTGGAGAAAAAAAGAAGTC  200

seq1  AGAACTATGACTTCTCAGGAAGCACTTTTTTAAACTACTGTGGTGGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATGACTTCTCAGGAAGCACTTTTTTAAACTACTGTGGTGGTTTC  250

seq1  AGTAAGAAAACTGCCCCATAATGTTGGACATTTCACCTCTTGCCATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAAAACTGCCCCATAATGTTGGACATTTCACCTCTTGCCATGCTA  300

seq1  TCTTATCAACGTGGTAGAAAACTAACAAATGCCAAGAATACACTGAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAACGTGGTAGAAAACTAACAAATGCCAAGAATACACTGAGAGG  350

seq1  TGAAGCTCAAATAGTGACGAACCTGCTCATGATAAAGAAGCAGAGATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCAAATAGTGACGAACCTGCTCATGATAAAGAAGCAGAGATCAG  400

seq1  ACCTCAGGACCAGAGAAGTATTCAAAGTTCGTTGGATAGAAACCAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGACCAGAGAAGTATTCAAAGTTCGTTGGATAGAAACCAAAGAA  450

seq1  GCACTGCCTTCACATAGGTCACCCTAGTTATCTCTATGTGCCTTTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCCTTCACATAGGTCACCCTAGTTATCTCTATGTGCCTTTGTTGT  500

seq1  TTAATACTAGACTGCATATATGCAAGGCAGATTTCCATTGTTCCCACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTAGACTGCATATATGCAAGGCAGATTTCCATTGTTCCCACCAA  550

seq1  GGAATACTTGCAGTGGGTGGAAATGTTAAACAGACTACAGAGGACACGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACTTGCAGTGGGTGGAAATGTTAAACAGACTACAGAGGACACGTA  600

seq1  GGGTTAAGGGATAATAGAATTCTTCTCTAGTCAGAATAGACACCTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGGGATAATAGAATTCTTCTCTAGTCAGAATAGACACCTTAATA  650

seq1  ATGACCTTGATTATTATTTTCTAAAATCTGGAAAGAATATGCTTTAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTGATTATTATTTTCTAAAATCTGGAAAGAATATGCTTTAAGAT  700

seq1  TTAAAATCCTCTTGCCTCCTCCACTATTGCACATATGTGTGAATATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCTCTTGCCTCCTCCACTATTGCACATATGTGTGAATATATCT  750

seq1  GCACTCACTTTGCATACACATGCACACATACCCCACACACATGGAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACTTTGCATACACATGCACACATACCCCACACACATGGAGAACA  800

seq1  ACTGAATGAACTGAGATCCCCACTAAACCCTGAGTGGAAAACATTACATT  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTGAATGAACTGAGATCCCCACTAAACCCTGAGTGG-AAACATTACATT  849

seq1  AT-GGTTATGCAGTTAAATATTACTTGGTATTAAGAAAAAACAGAAATAA  899
      || ||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ATGGGTTATGCAGTTAAATA-TACTTGGTATTAAG-AAAAACAGAAATAA  897

seq1  TAAAGGTGAGAACGCAGCATCATGTTGAAAGCTTGTTGAATGAAAATGTC  949
      |||| ||||| ||||||||||||| |||||||||| ||||||||||||||
seq2  TAAA-GTGAG-ACGCAGCATCATG-TGAAAGCTTG-TGAATGAAAATGTC  943

seq1  AAACACACTATTCTTCTTCTAAATGGCAGTCAGCAAAATTAAGCTGTGGC  999
       |||||||||||| |||||| |||||||||||||||   | |||||| ||
seq2  -AACACACTATTC-TCTTCT-AATGGCAGTCAGCAA---TTAGCTGT-GC  986

seq1  TACAG-AAAATAGAATATTTTGAGGAATGATTATGGTATATAACTTAGTT  1048
      ||||| ||||||||||| ||||||| |||||||| ||| |||   |||||
seq2  TACAGAAAAATAGAATA-TTTGAGG-ATGATTAT-GTAAATA--CTAGTT  1031

seq1  GGTAGAATGCTTACATAGAATGCACATAGCCCTGGGTTCTCTCCTCGGCA  1098
       |||| |||||||||| | |||| ||||||||| ||||| |||||| | |
seq2  -GTAG-ATGCTTACAT-GGATGC-CATAGCCCT-GGTTCCCTCCTCCG-A  1075

seq1  CCATCTATAC  1108
      ||||||||||
seq2  CCATCTATAC  1085