BAC Information

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BAC

Clone NameB6Ng01-142K21
Chromosome9 (Build37)
Map Location 116,056,736 - 116,178,176
singlet/doubletdoublet
Overlap geneTgfbr2, LOC100043817, LOC100043819
Upstream geneOsbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164, Gadl1, EG668829
Downstream geneD730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142K21.bB6Ng01-142K21.g
ACCDH940813DH940814
length2401,013
definitionDH940813|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K21, 5' end.DH940814|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,056,736 - 116,056,975)(116,177,158 - 116,178,176)
sequence
gaattctgtgaatttcagaaggccatagtcaagccacagtggttgaaagc
catagccagcatgccagtactctagctgttggcacagtgtagaagagcca
attacagtagtgattttaataaggaaaatgaaatatacaaagtctacagg
tatatttttccaacaaattgttctcccgttttgatgtacaagcatgtgcg
agcatgtatgtgtgtgtgtatgtgtgtgtgtgtgtgtgtg
gaattctggtttctagatcaaggattgtggaagaagtactcatagaaggc
atttggacagatcatctgtgtgacatatcagccactgatgtgcaagaaat
gatggactggtgtggtaatgcacattagtgcatacctataattacagtac
ttggaaggatcaggagttcaaagccacctgagcctacatagtaagctcaa
aaccagctggggatccataagtccctgagtcttttctcaaacaagatttg
agtcatggaaggttctgtgtggtaagactgacacttcccatagttccaca
cagcatcttttaatgcaagatgcactctgtgtactgtgttctgcttcata
ctgcactaatggttcccctgtgatgcagagggtggataagtctcggagta
tctccatctgaaatgactgactgagatataggaaaatggtataaatgtag
ctaaatcgctccagactcacactcagcagacagaacatgcagcagccgta
agaaccaggggcttcttacagaatatctaatcctcaggccaagcctacag
gagaggtggtgcacgctctgatctgggacaggctgaaaccaatcgctttt
gaaacacacgtgctgtggttttggagtggcatgtcccccacaagcttaca
tgcatgaacacttgttctccagctggtggtgggttggatgggttatgaag
ccgttaggcattgatggttattggaagaagctcataactggagacgcacc
tcggtgttctacagtcgagctgcacgtcctgcctgctctccacttcccaa
cacagtgtgaccagatatctcatgctcctactgcaccatcttagccagca
tggacacttcaacctaggcttagatggctgccctttttggaatctggaga
ctagaaagcaagctaccagctattataatttgcttctattgctgtgataa
cctctatgagagagcaactttggagggaggaaaggttattttggcctcgg
ttatataatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116056736_116056975
seq2: B6Ng01-142K21.b_44_283

seq1  GAATTCTGTGAATTTCAGAAGGCCATAGTCAAGCCACAGTGGTTGAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAATTTCAGAAGGCCATAGTCAAGCCACAGTGGTTGAAAGC  50

seq1  CATAGCCAGCATGCCAGTACTCTAGCTGTTGGCACAGTGTAGAAGAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCAGCATGCCAGTACTCTAGCTGTTGGCACAGTGTAGAAGAGCCA  100

seq1  ATTACAGTAGTGATTTTAATAAGGAAAATGAAATATACAAAGTCTACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTAGTGATTTTAATAAGGAAAATGAAATATACAAAGTCTACAGG  150

seq1  TATATTTTTCCAACAAATTGTTCTCCCGTTTTGATGTACAAGCATGTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTCCAACAAATTGTTCTCCCGTTTTGATGTACAAGCATGTGCG  200

seq1  AGCATGTATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTG  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTATGTGTGTGTGTATGTGTGTGTGTGTGTGTGTG  240

seq1: chr9_116177158_116178176
seq2: B6Ng01-142K21.g_70_1082 (reverse)

seq1  ATAAATTATATAACCTGTAGGCCAAATAACCCTTTCCT-CCTCC-AAGTT  48
      |||||||||||||||   ||||||||  | |||||||| ||||| |||||
seq2  ATAAATTATATAACC--GAGGCCAAAATAACCTTTCCTCCCTCCAAAGTT  48

seq1  GCTTCTCTCATAGAGTTTTATCACAGCAATAGAAAGCAAATTAATATAGC  98
      || ||||||||||||  ||||||||||||||| ||||||||||  |||||
seq2  GC-TCTCTCATAGAG-GTTATCACAGCAATAG-AAGCAAATTATAATAGC  95

seq1  TGGTAGCTTGCTTTCTAGTTCTCCAGGATTCCAAAAAGGGCAGCCATCTA  148
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  TGGTAGCTTGCTTTCTAG-TCTCCA-GATTCCAAAAAGGGCAGCCATCTA  143

seq1  AGCCTAGGTTTGAGTGTCCATGCTGGCTAAGATGGTGGCAGTAGGAGCAT  198
      ||||||||||  |||||||||||||||||||||||| |||||||||||||
seq2  AGCCTAGGTTGAAGTGTCCATGCTGGCTAAGATGGT-GCAGTAGGAGCAT  192

seq1  GAGATATCTGGTCACACTGTGTTGGGAAGTGGAGAGCAGGCAGGACGTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCTGGTCACACTGTGTTGGGAAGTGGAGAGCAGGCAGGACGTGC  242

seq1  AGCTCGACTGTAGAACACCGAGGTGCGTCTCCAGTTATGAGCTTCTTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGACTGTAGAACACCGAGGTGCGTCTCCAGTTATGAGCTTCTTCCA  292

seq1  ATAACCATCAATGCCTAACGGCTTCATAACCCATCCAACCCACCACCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATCAATGCCTAACGGCTTCATAACCCATCCAACCCACCACCAGC  342

seq1  TGGAGAACAAGTGTTCATGCATGTAAGCTTGTGGGGGACATGCCACTCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAACAAGTGTTCATGCATGTAAGCTTGTGGGGGACATGCCACTCCA  392

seq1  AAACCACAGCACGTGTGTTTCAAAAGCGATTGGTTTCAGCCTGTCCCAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGCACGTGTGTTTCAAAAGCGATTGGTTTCAGCCTGTCCCAGA  442

seq1  TCAGAGCGTGCACCACCTCTCCTGTAGGCTTGGCCTGAGGATTAGATATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCGTGCACCACCTCTCCTGTAGGCTTGGCCTGAGGATTAGATATT  492

seq1  CTGTAAGAAGCCCCTGGTTCTTACGGCTGCTGCATGTTCTGTCTGCTGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAAGCCCCTGGTTCTTACGGCTGCTGCATGTTCTGTCTGCTGAG  542

seq1  TGTGAGTCTGGAGCGATTTAGCTACATTTATACCATTTTCCTATATCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTGGAGCGATTTAGCTACATTTATACCATTTTCCTATATCTCA  592

seq1  GTCAGTCATTTCAGATGGAGATACTCCGAGACTTATCCACCCTCTGCATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCATTTCAGATGGAGATACTCCGAGACTTATCCACCCTCTGCATC  642

seq1  ACAGGGGAACCATTAGTGCAGTATGAAGCAGAACACAGTACACAGAGTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAACCATTAGTGCAGTATGAAGCAGAACACAGTACACAGAGTGC  692

seq1  ATCTTGCATTAAAAGATGCTGTGTGGAACTATGGGAAGTGTCAGTCTTAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCATTAAAAGATGCTGTGTGGAACTATGGGAAGTGTCAGTCTTAC  742

seq1  CACACAGAACCTTCCATGACTCAAATCTTGTTTGAGAAAAGACTCAGGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAACCTTCCATGACTCAAATCTTGTTTGAGAAAAGACTCAGGGA  792

seq1  CTTATGGATCCCCAGCTGGTTTTGAGCTTACTATGTAGGCTCAGGTGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGATCCCCAGCTGGTTTTGAGCTTACTATGTAGGCTCAGGTGGCT  842

seq1  TTGAACTCCTGATCCTTCCAAGTACTGTAATTATAGGTATGCACTAATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCCTGATCCTTCCAAGTACTGTAATTATAGGTATGCACTAATGT  892

seq1  GCATTACCACACCAGTCCATCATTTCTTGCACATCAGTGGCTGATATGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACCACACCAGTCCATCATTTCTTGCACATCAGTGGCTGATATGTC  942

seq1  ACACAGATGATCTGTCCAAATGCCTTCTATGAGTACTTCTTCCACAATCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATGATCTGTCCAAATGCCTTCTATGAGTACTTCTTCCACAATCC  992

seq1  TTGATCTAGAAACCAGAATTC  1019
      |||||||||||||||||||||
seq2  TTGATCTAGAAACCAGAATTC  1013