BAC Information

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BAC

Clone NameB6Ng01-143F23
Chromosome9 (Build37)
Map Location 123,176,489 - 123,335,361
singlet/doubletdoublet
Overlap geneScp2-ps2, Lars2
Upstream geneTmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158
Downstream geneLimd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1, Ccr3, Ccr2, Ccr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143F23.bB6Ng01-143F23.g
ACCDH941323DH941324
length1,020617
definitionDH941323|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F23, 5' end.DH941324|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,334,718 - 123,335,361)(123,176,489 - 123,177,099)
sequence
gaattctagaaaaaaaaaagttgcctaagaatgagaaagtaaggctgggg
ctggtggtgcatgtctagcactctggaggctgaatttgagggtaacctga
gatatacagtaagttctagactagtctgggctacatggcaagagccagtt
ttaaaaataagcaaagcaaactaacagaacaatgtaattatagtatacat
gacccagttatgagtatttatgaggcgaattgtagagagaatctcttata
agcatcacctgtcaataaaaaagccaatgagtttaggcaggaaataggag
gtgggacattcagcagagatagagaaaattcaggaaatagtgagaagcat
gggagattcggctcaagaactataaggagaaaaacctaagaagataagga
gaggtgaacagccatatagctgattcccagttagaataaaagggataata
aattaagtgtaagtcagacagcaagctgaagttgatggctaaggcattta
ttaataaataattagtctcaaaagagctatcattctgggcataggtgctg
gaagagaaaacagatttatttatttatttacttatttacttacagcaaat
gacttgcaatttacccaatcagtgtattatcatgaataaagtttactaca
agaacagtagcagggaaagagccttacacgtagacatcctcagggactag
atggactagaagtacaaatatccaaagtccagaggaaagaaaagggcaca
tgaacagttactgacaggtgccttagtttacctgtgttattacatcacat
taaaagagccacaactgggctggcctttgcatttgcaattcttgtttcaa
actttcatatagtgatctacaaggccctcaaataaaatcagcccaagaat
tagggatttgcattttcaagaggtaaaggcaggatccaggaggagcatgc
agagtgcatcagtgtgggcttgagttgagtcagctagcactctggatcag
tgctaaccctgtgctggagc
gaattcagggggtttcaatttggcacacctgggagatggaactggctgtc
aaagccaaagcaatagaatggtcccctctgccaccaacagtgtcgtaaac
atctacttcatactgcttctaaacacaccacatccccctcaaatggaata
attggcattccatttataggggtggagaggagatgggggagcaaaagccc
gttttggggagctgggaacattgcaacacggttttcatggccttgaatgc
cttctgaccacaatctgcattctggatacagtgtcagtctcatgctttca
gagaaccatggtttgctgggacatgctcattcgtgcaggtctctgcctgg
cttgctcttcatgttgaggtcacttctgagtgcccccactctctttttat
gttttagtccccagattttggagatttgaaggaattatgactatgacatt
tgaaacctggcaagtctgacttgtgtgacttgtgacaggattctgccttt
ctgtgtctcagttttcttctgaagcggggcttgatggctgctctatgatg
agcatcaaaatgaaaatctttccttgaagcagagtcagttcaaaaaacta
aggtatttggtgagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_123334718_123335361
seq2: B6Ng01-143F23.b_437_1065 (reverse)

seq1  GCTCCAGCAACAGGGGTTTAGCAACTGGATCCAGAGTGCTAGCTGAACCT  50
      |||||||| ||||||  ||||| ||| |||||||||||||||||||  ||
seq2  GCTCCAGC-ACAGGG--TTAGC-ACT-GATCCAGAGTGCTAGCTGA--CT  43

seq1  CAACCTCCAAAGCCCACACTGGATGCCACTCTGCCCTGCCTTCTTCCTGG  100
      ||| |||  ||||||||||| |||| ||||||| | |||  || ||||||
seq2  CAA-CTC--AAGCCCACACT-GATG-CACTCTG-CATGC--TCCTCCTGG  85

seq1  ATCCTGCCTTTACCTCTTGGAAATGCAAAT-CCTAATTCTTGGGCTGATT  149
      ||||||||||||||||||| |||||||||| ||||||||||||||||| |
seq2  ATCCTGCCTTTACCTCTTGAAAATGCAAATCCCTAATTCTTGGGCTGA-T  134

seq1  TTTATTTGAGGG-CTTGTAGATCACTATATGAAAGTTTGAAACAAGAATT  198
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAGGGCCTTGTAGATCACTATATGAAAGTTTGAAACAAGAATT  184

seq1  GCAAATTGCAAAGGCCAG-CCAGTTGTGGCTCTTTTAATGGTGATGTAAT  247
      ||||| |||||||||||| |||||||||||||||||||| ||||||||||
seq2  GCAAA-TGCAAAGGCCAGCCCAGTTGTGGCTCTTTTAAT-GTGATGTAAT  232

seq1  AACACAGGTAAACTAAGGCACCTGTCAGTAACTGTTCATGTGCCCCTTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACACAGGTAAACTAAGGCACCTGTCAGTAACTGTTCATGTGCCCTTTTC  282

seq1  TTTCCTCTGGACTTTGGATATTTGTACTTCTAGTCCATCTAGTCCCTGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTGGACTTTGGATATTTGTACTTCTAGTCCATCTAGTCCCTGAG  332

seq1  GATGTCTACGTGTAAGGCTCTTTCCCTGCTACTGTTCTTGTAGTAAACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTACGTGTAAGGCTCTTTCCCTGCTACTGTTCTTGTAGTAAACTT  382

seq1  TATTCATGATAATACACTGATTGGGTAAATTGCAAGTCATTTGCTGTAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATGATAATACACTGATTGGGTAAATTGCAAGTCATTTGCTGTAAG  432

seq1  TAAATAAGTAAATAAATAAATAAATCTGTTTTCTCTTCCAGCACCTATGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGTAAATAAATAAATAAATCTGTTTTCTCTTCCAGCACCTATGC  482

seq1  CCAGAATGATAGCTCTTTTGAGACTAATTATTTATTAATAAATGCCTTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATGATAGCTCTTTTGAGACTAATTATTTATTAATAAATGCCTTAG  532

seq1  CCATCAACTTCAGCTTGCTGTCTGACTTACACTTAATTTATTATCCCTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAACTTCAGCTTGCTGTCTGACTTACACTTAATTTATTATCCCTTT  582

seq1  TATTCTAACTGGGAATCAGCTATATGGCTGTTCACCTCTCCTTATCT  644
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAACTGGGAATCAGCTATATGGCTGTTCACCTCTCCTTATCT  629

seq1: chr9_123176489_123177099
seq2: B6Ng01-143F23.g_64_680

seq1  GAATTCAGGGGGTTTCAATTTGGCACACCTGGGAGATGGAACTGGCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGGTTTCAATTTGGCACACCTGGGAGATGGAACTGGCTGTC  50

seq1  AAAGCCAAAGCAATAGAATGGTCCCCTCTGCCACCAACAGTGTCGTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAAGCAATAGAATGGTCCCCTCTGCCACCAACAGTGTCGTAAAC  100

seq1  ATCTACTTCATACTGCTTCTAAACACACCACATCCCCCTCAAATGGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTCATACTGCTTCTAAACACACCACATCCCCCTCAAATGGAATA  150

seq1  ATTGGCATTCCATTTATAGGGGTGGAGAGGAGATGGGGGAGCAAAAGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATTCCATTTATAGGGGTGGAGAGGAGATGGGGGAGCAAAAGCCC  200

seq1  GTTTTGGGGAGCTGGGAACATTGCAACACGGTTTTCATGGCCTTGAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGGAGCTGGGAACATTGCAACACGGTTTTCATGGCCTTGAATGC  250

seq1  CTTCTGACCACAATCTGCATTCTGGATACAGTGTCAGTCTCATGCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACCACAATCTGCATTCTGGATACAGTGTCAGTCTCATGCTTTCA  300

seq1  GAGAACCATGGTTTGCTGGGACATGCTCATTCGTGCAGGTCTCTGCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCATGGTTTGCTGGGACATGCTCATTCGTGCAGGTCTCTGCCTGG  350

seq1  CTTGCTCTTCATGTTGAGGTCACTTCTGAGTGCCCCCACTCTCTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCTTCATGTTGAGGTCACTTCTGAGTGCCCCCACTCTCTTTTTAT  400

seq1  GTTTTAGTCCCCAGA-TTTGGAGATTTGAAGGAATTATGACTATGACATT  449
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTCCCCAGATTTTGGAGATTTGAAGGAATTATGACTATGACATT  450

seq1  TGAAACCTGGCAAGTCTGACTTGTGTGACTTGTGACAGGATTCTGCCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTGGCAAGTCTGACTTGTGTGACTTGTGACAGGATTCTGCCTTT  500

seq1  CTGTGTCTCAGTTTTCTTCTGAAGC-GGGCTTGATGGCTGCTCTATGATG  548
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTGTCTCAGTTTTCTTCTGAAGCGGGGCTTGATGGCTGCTCTATGATG  550

seq1  AGCATC-AAATG-AAATC-TTCCTTGTAGCAGAGTCAGTTC-AGAAACTA  594
      |||||| ||||| ||||| ||||||| |||||||||||||| | ||||||
seq2  AGCATCAAAATGAAAATCTTTCCTTGAAGCAGAGTCAGTTCAAAAAACTA  600

seq1  GGGTATTTGGTGAGTGT  611
       ||||||||||||||||
seq2  AGGTATTTGGTGAGTGT  617