BAC Information

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BAC

Clone NameB6Ng01-149L03
Chromosome9 (Build37)
Map Location 17,578,707 - 17,702,848
singlet/doubletdoublet
Overlap geneLOC100040508
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710
Downstream geneEG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149L03.bB6Ng01-149L03.g
ACCDH945963DH945964
length1,149961
definitionDH945963|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L03, 5' end.DH945964|Mus musculus domesticus DNA, BAC clone: B6Ng01-149L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,701,690 - 17,702,848)(17,578,707 - 17,579,657)
sequence
gaattcaattggatttgttccataaaaatgaatatgagtaattgataaaa
atgggtaaggaaaacactgaataatttatacaagctatttgaggtcattt
tttttttacaaagcatttaggatgtgagacaatcagaatgcattgagtgc
tataaaaagacacaaggagttttaaattcagggataattagcacagagca
aatatgtcacctaatcaactgggatgagtcatcatcttctaaagctgaaa
tgtgaggttgttcttctgtatcactgaggaaaatgtaccatggtggcata
ttggttagtattagtgactgtttagtgacctttcccagtactggctgtat
ggggcccagacaagaccaggatgaggctgattctcagtctatttctaagg
tgattctttgtgggtttaattgatttccaccaaattacatgagaaagaaa
cattttttaacccttcccagaattttctcttatgaggttctcagatattt
catgctcttcagagaggaatttcagggtcaatatattttgttattgaagc
cttagatagcgtcttgtgagtgtccagatttttacaaaatgtggataatc
actccagaattttaatagagtaatgtgtaatacagtcagtaaaatcatga
cacagtaaagaaaagaggtggttactagggaataaccaatttggggtatt
tacatttcatatcttactcagcgctctcaatatgccccctctcaaatgaa
accctttataagtttgagtctgggtctatagctcagtgataacacatgca
acttatactacaccctgggttcacccacagtaccaacaaaaggtgaaaat
accaccaccaaaccatctgactcaaaactgttgaacctcacaacaattat
ataaataaaatattaccattaatattttagtaatacaaaatcaatacaag
ccagttatatgacacacagtcatcctcacaatattcagggctcctagagt
caagttctccttatcattgtaaaaataattcttgaattggctagagtact
agaaatgggtgcaagtacagttcccaggccttttttattataaggtcagt
cagtacttctagaaacattccaatattgacagttatggaatacgtatga
gaattcttctggtatagtatttaataattctaacacctgtgatgactttt
cctggttgtcagcttaactatgtctggaatgaactataatacagaaataa
aaggcatatctatgatccagaatttgaggctggaagacacaggcttctga
cttgaatcttgacatggagaacttgaggcatagtggacaagaaatgctaa
gacccaggcaaggtgtaaacacctttaatcccaggagactgaggcaaaca
gatctttgagttcaacgtcagtttgggacaaagtgagttccagatccagg
taaggtgttacatatctttaatctgggttacttcttctgcttgaggtcta
cataaggtcaccataaggtcaagggaagaaggaagattcattttttttgt
ctgcttgcacttacttgccagcgcatctcgtggaatgtacttcttcagaa
ttccagcttatacagaagaccaggtgaaacaactagccttctgagacagc
aaccaagagatctttagacttctcattcagggctacccattgttgcatta
gttgaactgtagactttaagtcattacaatatatttccctcatatgtaga
gacattatataagtttgttgactctagagaaccctgactactataagact
attcttttctttaataccctatacttaaactagaaaagattaatcactat
tttatcttgaaaattaaagaaactaaaatgtagatttttattattaatat
tttatccacttaaacatatgatattctgaaagtgtagtgtaaaatctgaa
aatatttcaaatatatgtatatatctatatacatatatatatgtgtgtgt
gtgtgtgtgtataacctggattgttctttttcaacttggtggtatttcat
gacaaaataataaataaaattctttttaaattatggcataattgaatgta
atttttcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17701690_17702848
seq2: B6Ng01-149L03.b_48_1196 (reverse)

seq1  TCATAACGTATTTCATTAAACTGTCAAATTATTGGAATTGTTCTAGAAGT  50
      |||| ||||||| |||  |||||||||  |||||||||  ||||||||||
seq2  TCAT-ACGTATTCCAT--AACTGTCAA--TATTGGAATGTTTCTAGAAGT  45

seq1  ACTGACTTGGACTTTATAATAAAAAAGGCCTGGGAACTTGTACTTGCACC  100
      |||||||  ||| |||||||||||||||||||||||| ||||||||||||
seq2  ACTGACT--GACCTTATAATAAAAAAGGCCTGGGAAC-TGTACTTGCACC  92

seq1  CATTTCTAAGTACTCTAGCCAATTCAGGAATTATTTTTACAATGATAGGG  150
      ||||||| |||||||||||||||||| |||||||||||||||||||| ||
seq2  CATTTCT-AGTACTCTAGCCAATTCAAGAATTATTTTTACAATGATAAGG  141

seq1  AGAACTTGACTCTAGGAGCCCTGAATATTGTGAGGATGACTGTGTGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGACTCTAGGAGCCCTGAATATTGTGAGGATGACTGTGTGTCAT  191

seq1  ATAACTGGCTTGTATTGATTTTGTATTACTAAAATATTAATGGTAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGGCTTGTATTGATTTTGTATTACTAAAATATTAATGGTAATATT  241

seq1  TTATTTATATAATTGTTGTGAGGTTCAACAGTTTTGAGTCAGATGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATAATTGTTGTGAGGTTCAACAGTTTTGAGTCAGATGGTTTG  291

seq1  GTGGTGGTATTTTCACCTTTTGTTGGTACTGTGGGTTGAACCCAGGGTGT  350
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGGTGGTATTTTCACCTTTTGTTGGTACTGTGGG-TGAACCCAGGGTGT  340

seq1  AGTATAAGTTGCATGTGTTATCACTGAGCTATAGACCCAGACTCAAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGTTGCATGTGTTATCACTGAGCTATAGACCCAGACTCAAACTT  390

seq1  ATAAAGGGTTTCATTTGAGAGGGGGCATATTGAGAGCGCTGAGTAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGTTTCATTTGAGAGGGGGCATATTGAGAGCGCTGAGTAAGATA  440

seq1  TGAAATGTAAATACCCCAAATTGGTTATTCCCTAGTAACCACCTCTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTAAATACCCCAAATTGGTTATTCCCTAGTAACCACCTCTTTTC  490

seq1  TTTACTGTGTCATGATTTTACTGACTGTATTACACATTACTCTATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTGTCATGATTTTACTGACTGTATTACACATTACTCTATTAAAA  540

seq1  TTCTGGAGTGATTATCCACATTTTGTAAAAATCTGGACACTCACAAGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTGATTATCCACATTTTGTAAAAATCTGGACACTCACAAGACG  590

seq1  CTATCTAAGGCTTCAATAACAAAATATATTGACCCTGAAATTCCTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAAGGCTTCAATAACAAAATATATTGACCCTGAAATTCCTCTCTG  640

seq1  AAGAGCATGAAATATCTGAGAACCTCATAAGAGAAAATTCTGGGAAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATGAAATATCTGAGAACCTCATAAGAGAAAATTCTGGGAAGGGT  690

seq1  TAAAAAATGTTTCTTTCTCATGTAATTTGGTGGAAATCAATTAAACCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGTTTCTTTCTCATGTAATTTGGTGGAAATCAATTAAACCCAC  740

seq1  AAAGAATCACCTTAGAAATAGACTGAGAATCAGCCTCATCCTGGTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCACCTTAGAAATAGACTGAGAATCAGCCTCATCCTGGTCTTGT  790

seq1  CTGGGCCCCATACAGCCAGTACTGGGAAAGGTCACTAAACAGTCACTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCCCATACAGCCAGTACTGGGAAAGGTCACTAAACAGTCACTAAT  840

seq1  ACTAACCAATATGCCACCATGGTACATTTTCCTCAGTGATACAGAAGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCAATATGCCACCATGGTACATTTTCCTCAGTGATACAGAAGAAC  890

seq1  AACCTCACATTTCAGCTTTAGAAGATGATGACTCATCCCAGTTGATTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCACATTTCAGCTTTAGAAGATGATGACTCATCCCAGTTGATTAGG  940

seq1  TGACATATTTGCTCTGTGCTAATTATCCCTGAATTTAAAACTCCTTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATTTGCTCTGTGCTAATTATCCCTGAATTTAAAACTCCTTGTGT  990

seq1  CTTTTTATAGCACTCAATGCATTCTGATTGTCTCACATCCTAAATGCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATAGCACTCAATGCATTCTGATTGTCTCACATCCTAAATGCTTT  1040

seq1  GTAAAAAAAAAATGACCTCAAATAGCTTGTATAAATTATTCAGTGTTTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAAAATGACCTCAAATAGCTTGTATAAATTATTCAGTGTTTTC  1090

seq1  CTTACCCATTTTTATCAATTACTCATATTCATTTTTATGGAACAAATCCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCATTTTTATCAATTACTCATATTCATTTTTATGGAACAAATCCA  1140

seq1  ATTGAATTC  1159
      |||||||||
seq2  ATTGAATTC  1149

seq1: chr9_17578707_17579657
seq2: B6Ng01-149L03.g_70_1030

seq1  GAATTCTTCTGGTATAGTATTTAATAATTCTAACACCTGTGATGACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGTATAGTATTTAATAATTCTAACACCTGTGATGACTTTT  50

seq1  CCTGGTTGTCAGCTTAACTATGTCTGGAATGAACTATAATACAGAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGTCAGCTTAACTATGTCTGGAATGAACTATAATACAGAAATAA  100

seq1  AAGGCATATCTATGATCCAGAATTTGAGGCTGGAAGACACAGGCTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATATCTATGATCCAGAATTTGAGGCTGGAAGACACAGGCTTCTGA  150

seq1  CTTGAATCTTGACATGGAGAACTTGAGGCATAGTGGACAAGAAATGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTTGACATGGAGAACTTGAGGCATAGTGGACAAGAAATGCTAA  200

seq1  GACCCAGGCAAGGTGTAAACACCTTTAATCCCAGGAGACTGAGGCAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGCAAGGTGTAAACACCTTTAATCCCAGGAGACTGAGGCAAACA  250

seq1  GATCTTTGAGTTCAACGTCAGTTTGGGACAAAGTGAGTTCCAGATCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGAGTTCAACGTCAGTTTGGGACAAAGTGAGTTCCAGATCCAGG  300

seq1  TAAGGTGTTACATATCTTTAATCTGGGTTACTTCTTCTGCTTGAGGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTTACATATCTTTAATCTGGGTTACTTCTTCTGCTTGAGGTCTA  350

seq1  CATAAGGTCACCATAAGGTCAAGGGAAGAAGGAAGATTCATTTTTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTCACCATAAGGTCAAGGGAAGAAGGAAGATTCATTTTTTTTGT  400

seq1  CTGCTTGCACTTACTTGCCAGCGCATCTCGTGGAATGTACTTCTTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCACTTACTTGCCAGCGCATCTCGTGGAATGTACTTCTTCAGAA  450

seq1  TTCCAGCTTATACAGAAGACCAGGTGAAACAACTAGCCTTCTGAGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTTATACAGAAGACCAGGTGAAACAACTAGCCTTCTGAGACAGC  500

seq1  AACCAAGAGATCTTTAGACTTCTCATTCAGGGCTACCCATTGTTGCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGAGATCTTTAGACTTCTCATTCAGGGCTACCCATTGTTGCATTA  550

seq1  GTTGAACTGTAGACTTTAAGTCATTACAATATATTTCCCTCATATGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACTGTAGACTTTAAGTCATTACAATATATTTCCCTCATATGTAGA  600

seq1  GACATTATATAAGTTTGTTGACTCTAGAGAACCCTGACTACTATAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATATAAGTTTGTTGACTCTAGAGAACCCTGACTACTATAAGACT  650

seq1  ATTCTTTTCTTTAATACCCTATACTTAAACTAGAAAAGATTAATCACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTTTAATACCCTATACTTAAACTAGAAAAGATTAATCACTAT  700

seq1  TTTATCTTGAAAATT-AAGAAACTAAAAATGTAGATTTTTATTATTAATA  749
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  TTTATCTTGAAAATTAAAGAAACT-AAAATGTAGATTTTTATTATTAATA  749

seq1  TTTTATCCACTTAAACATATGATATTCTGAAAGTGTAGTGTAAAATCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCACTTAAACATATGATATTCTGAAAGTGTAGTGTAAAATCTGA  799

seq1  AAATATTTCAAATATATGTATATATCTATATACATATATATATGTGTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCAAATATATGTATATATCTATATACATATATATATGTGTGTG  849

seq1  TGTGTGTGTGTATAACCT-GATTGTTC-TTTTCAACTT-GTTGTA-TTCA  895
      |||||||||||||||||| |||||||| |||||||||| || ||| ||||
seq2  TGTGTGTGTGTATAACCTGGATTGTTCTTTTTCAACTTGGTGGTATTTCA  899

seq1  TGAC-AAATAATAAAT-AAATTC-TTTTAAAATAT-GCATAATT-AATGT  940
      |||| ||||||||||| |||||| ||||||| ||| |||||||| |||||
seq2  TGACAAAATAATAAATAAAATTCTTTTTAAATTATGGCATAATTGAATGT  949

seq1  AA-TTTTCACCC  951
      || |||||||||
seq2  AATTTTTCACCC  961