BAC Information

Click to search

BAC

Clone NameB6Ng01-150A12
Chromosome9 (Build37)
Map Location 31,163,364 - 31,164,494
singlet/doubletsinglet
Overlap genePrdm10
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539
Downstream geneNfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150A12.bB6Ng01-150A12.g
ACCDH946214DH946215
length1,106238
definitionDH946214|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A12, 5' end.DH946215|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgactttgttttcttatcccttctgtctgtgacttttacaat
agagaatatgtattacctagaatatgaaatcatttgaaatgtccaagatg
taaaatagtctgtcagcttgcatggtagatcgggcctcctcggggactga
ttaggcagtgaaaaggtgtgtggtagaattctttgcctttatatatgtga
gtatactgctgctgtcttcagacaccccagaagagggtacaggatcccat
tacagatggttgggagccaccatgtggttgctgggaattgaactcaggac
ctctggtagagcagtcagtgctcttaaccactgagccatctctccagcct
aaattctctgcttttttattgcagttacacaagacagggctgctgcctat
ggtgtgtatcttttacattttctgtgaagggtgtttttacagttactatc
tgtcttagagttgccattgctgtgaaaagacaccatgaccaaggcaactc
ttataaaagacaacatttccttggggctggtttacagtcggaggatcagt
ctgttatcatggtggaaagcatggctgtgtccaggcaggcatggtgctgg
aggagctgagaggtctacttcttgttctgaaggcaaacaaaagaagactg
tctcccatgtggctaggggaaggtcttgaagccctccccacagtgataca
ctttccccaagaaggccacacctactccaacaaggccacacttcttgata
gtgccactcctggcaagcatattcaaactaccacagtatcttatacagaa
tttttacttcaaactaccacacttatttatacaggaaattcaaggaaatt
acctagcatatctatattagattcttactttatccatttgcccttgctcc
ttgagagctaggattatagctaggattatagagcaccagcccagatctct
tcttatctctctctttttttcccctctcattttcagacaggatttctctg
tgtacagagccctgcttctgactcactttgtagacaggctggctctgctc
taagctgggtaaggtgtgtgctaccacacctgacagcttctattaagata
ggtttc
ttacctagcatgaagccctgggtacaatcctcagaacttgtgtaaaatag
acatgatagaaaacatctgtaaatctagcactcaggctgcagaggcagga
ggattttcagctagtgatccgaaggcccaactgtggagcagggtgttggg
gaaatgggagaaagaagaaagggagcattaaagaggattaaagagattaa
agaggagagaagagaggaggggagaggagaagggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31163364_31164494
seq2: B6Ng01-150A12.b_47_1152

seq1  GAATTCATTGACTTTGTTTTCTTATCCCTTCTGTCTGTGACTTTTACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGACTTTGTTTTCTTATCCCTTCTGTCTGTGACTTTTACAAT  50

seq1  AGAGAATATGTATTACCTAGAATATGAAATCATTTGAAATGTCCAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATGTATTACCTAGAATATGAAATCATTTGAAATGTCCAAGATG  100

seq1  TAAAATAGTCTGTCAGCTTGCATGGTAGATCGGGCCTCCTCGGGGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTCTGTCAGCTTGCATGGTAGATCGGGCCTCCTCGGGGACTGA  150

seq1  TTAGGCAGTGAAAAGGTGTGTGGTAGAATTCTTTGCCTTTATATATGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGTGAAAAGGTGTGTGGTAGAATTCTTTGCCTTTATATATGTGA  200

seq1  GTATACTGCTGCTGTCTTCAGACACCCCAGAAGAGGGTACAGGATCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTGCTGCTGTCTTCAGACACCCCAGAAGAGGGTACAGGATCCCAT  250

seq1  TACAGATGGTTGGGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGGGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGAC  300

seq1  CTCTGGTAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCT  350

seq1  AAATTCTCTGCTTTTTTATTGCAGTTACACAAGACAGGGCTGCTGCCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCTGCTTTTTTATTGCAGTTACACAAGACAGGGCTGCTGCCTAT  400

seq1  GGTGTGTATCTTTTACATTTTCTGTGAAGGGTGTTTTTACAGTTACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTATCTTTTACATTTTCTGTGAAGGGTGTTTTTACAGTTACTATC  450

seq1  TGTCTTAGAGTTGCCATTGCTGTGAAAAGACACCATGACCAAGGCAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGAGTTGCCATTGCTGTGAAAAGACACCATGACCAAGGCAACTC  500

seq1  TTATAAAAGACAACATTTCCTTGGGGCTGGTTTACAGTCGGAGGATCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGACAACATTTCCTTGGGGCTGGTTTACAGTCGGAGGATCAGT  550

seq1  CTGTTATCATGGTGGAAAGCATGGCTGTGTCCAGGCAGGCATGGTGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCATGGTGGAAAGCATGGCTGTGTCCAGGCAGGCATGGTGCTGG  600

seq1  AGGAGCTGAGAGGTCTACTTCTTGTTCTGAAGGCAAACAAAAGAAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAGAGGTCTACTTCTTGTTCTGAAGGCAAACAAAAGAAGACTG  650

seq1  TCTCCCATGTGGCTAGGGGAAGGTCTTGAAGCCCTCCCCACAGTGATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATGTGGCTAGGGGAAGGTCTTGAAGCCCTCCCCACAGTGATACA  700

seq1  CTTTCCCCAAGAAGGCCACACCTACTCCAACAAGGCCACACTTCTTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCAAGAAGGCCACACCTACTCCAACAAGGCCACACTTCTTGATA  750

seq1  GTGCCACTCCTGGCAAGCATATTCAAACTACCACAGTATCTTATACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTCCTGGCAAGCATATTCAAACTACCACAGTATCTTATACAGAA  800

seq1  TTTTTACTTCAAACTACCACACTTATTTATACAGGAAATTCAAGGAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTCAAACTACCACACTTATTTATACAGGAAATTCAAGGAAATT  850

seq1  ACCTAGCATATCTATATTAGATTCTTACTTTATCCATTTGCCCTTGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGCATATCTATATTAGATTCTTACTTTATCCATTTGCCCTTGCTCC  900

seq1  TTGAGAGCTAGGATTATAGCTAGGATTATAGAGCACCAGGCCCAGATTCT  950
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  TTGAGAGCTAGGATTATAGCTAGGATTATAGAGCACCA-GCCCAGA-TCT  948

seq1  CTTCTTATCTCTCTCTTTTTTTTCCCCTCTTCATTTTTCAAGACAGGATT  1000
      ||||||||||||||| ||||||||||||| |||||||   ||||||||||
seq2  CTTCTTATCTCTCTC-TTTTTTTCCCCTC-TCATTTT--CAGACAGGATT  994

seq1  TCTCTGTGTAACAGAGCCCTGGCTTCCTGGAACTCACTTTGTAGACCAGG  1050
      ||||||||| |||||||||| |||| |||  |||||||||||||| ||||
seq2  TCTCTGTGT-ACAGAGCCCT-GCTT-CTG--ACTCACTTTGTAGA-CAGG  1038

seq1  CTGGCCTCTGCCTCCTAAAAGCTGGGGTTAAAGGTGTGTGCTACCACACC  1100
      |||| |||||    ||  ||||||||    ||||||||||||||||||||
seq2  CTGG-CTCTG----CTCTAAGCTGGG---TAAGGTGTGTGCTACCACACC  1080

seq1  TGACAGTCTTCTTATTCTAAGATAGGGTTTC  1131
      |||||| |||| |||  ||||||| ||||||
seq2  TGACAG-CTTC-TAT--TAAGATA-GGTTTC  1106