BAC Information

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BAC

Clone NameB6Ng01-150H05
Chromosome9 (Build37)
Map Location 97,949,792 - 98,078,911
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc25a36, EG622727, LOC384971, Trim42, Clstn2
Downstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H05.bB6Ng01-150H05.g
ACCDH946527DH946528
length9241,128
definitionDH946527|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H05, 5' end.DH946528|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,949,792 - 97,950,714)(98,077,788 - 98,078,911)
sequence
gaattcactgtaaagggagacactgaagatgtaactgccaagaaagtaga
gtcttaaaagtaacatttcaataggagaatacaaaaagaaaggaaataaa
tagagtcttcccccagcaaagaaagaaagtgacagacaacctagagaaca
gagaactggaacggaaaacggagttagcatctagagcatataacagcagg
aaaaataaataccaaatcagctgattgctatgtaggcaaatgaactgaac
aaatcattctcaaagtaagagaaacaaccagccaattaatataggaagaa
aagttcctcacccagcaccctcggagaaatgcaaattgaaacctaggttt
catcccagtctgagtggttagcatcacgccaacaaatggcaaatgctatt
gaagattcggggtgaaagtaaccacatacactgttgagccaagtccacac
accaaggatatatttacctacctgtgtttactgcagcactgtccaccata
gctaagacacagcatcagcctagatgtccatcagtgggtaaatggataag
gaaaatgcggtttatatacatagtgacattttcagctgtacagaaaagga
gcatatgctggaaaatgcacacaagcggaagagcatcacactccatctca
aaggcaagtatcatgtattctgtcgtatgtgtgatctatgctgtacatac
atgtgcaaactcatacgttgtcagatgacctgaaaggagcaataaaattg
tgtatgggaaagaaatgtgactaatgggagttaggcaggtgtgagggggg
tagggaccagggtgtggaaggaatttgttcatatatgtttatgaagtggc
tttacagtaagagaaaaaggaaatgtgatatatatatatatatatatata
tatatatatatatatatgaatgat
gaattcacagagcagatgagcggacagatgataccggaatggcatgacaa
ggactctagtagagaaagcatgagggagttgggaacctccaagagggcag
cccagtctgtctggagacatctaggaatcttcctgggtgaggtgacatct
aagcagaattttgacagacaggtagtagccgggtcaaagcatttactgaa
tgagaatcaccagggagacaaagtatcgaggccaaagtcacaagtgggga
catcattgtccctccaggaaacagaaacagtcccacttggtttacataga
acagagggttccatcagagggatggatgagagtgtaagttagggagacca
gggaaagccttgaggaactctgtggggccagagctggggacgaggattga
aaactgctgtgtaggtagaaggattggatgccttatatttgggagaactt
ccatggcattcctgaaactgtgggttccccaagcaaaagctgtcctatcc
acagtggtagacaggaataaagagggaacatatagacaaaaggaatagga
tgtggccagagccacaggcctgcaaaggttggagcatcctgcctggtgag
aatctcagtggaagtaagtgtggtacctggggtaggtgtgcaactggcat
ctgccttcttgggccatggacagtcacgtgagggaagctaaaggagaatg
ctgtgcagagtatctgcaatgcattgcctctttcctcctggacctgtggc
tgcagcctctaatcagtcttggttgctggagctaaagctctaagctgcag
gatggagggagcagacagttgagcaaccctgtaaaggaggccgcactagg
gtgtgtctcttccagcagagataccagcagttgggtctctccgaggcagc
caagcagaaagccaggtacaaagcatgggtttcccatgcagacacacagt
agacgctgtaaacctagctgttcttttctaccaagcctctcgctgagaag
gaatatggactcccagattttggagtcccacaactgagacatttcctgca
aggaaacatttatctttattccacagaatggacagggagacccaaagcag
gccctagtttcctaggtgaaaccttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_97949792_97950714
seq2: B6Ng01-150H05.b_49_972

seq1  GAATTCACTGTAAAGGGAGACACTGAAGATGTAACTGCCAAGAAAGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTAAAGGGAGACACTGAAGATGTAACTGCCAAGAAAGTAGA  50

seq1  GTCTTAAAAGTAACATTTCAATAGGAGAATACAAAAAGAAAGGAAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAAGTAACATTTCAATAGGAGAATACAAAAAGAAAGGAAATAAA  100

seq1  TAGAGTCTTCCCCCAGCAAAGAAAGAAAGTGACAGACAACCTAGAGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTTCCCCCAGCAAAGAAAGAAAGTGACAGACAACCTAGAGAACA  150

seq1  GAGAACTGGAACGGAAAACGGAGTTAGCATCTAGAGCATATAACAGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGGAACGGAAAACGGAGTTAGCATCTAGAGCATATAACAGCAGG  200

seq1  AAAAATAAATACCAAATCAGCTGATTGCTATGTAGGCAAATGAACTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATACCAAATCAGCTGATTGCTATGTAGGCAAATGAACTGAAC  250

seq1  AAATCATTCTCAAAGTAAGAGAAACAACCAGCCAATTAATATAGGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTCTCAAAGTAAGAGAAACAACCAGCCAATTAATATAGGAAGAA  300

seq1  AAGTTCCTCACCCAGCACCCTCGGAGAAATGCAAATTGAAACCTAGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTCACCCAGCACCCTCGGAGAAATGCAAATTGAAACCTAGGTTT  350

seq1  CATCCCAGTCTGAGTGGTTAGCATCACGCCAACAAATGGCAAATGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAGTCTGAGTGGTTAGCATCACGCCAACAAATGGCAAATGCTATT  400

seq1  GAAGATTCGGGGTGAAAGTAACCACATACACTGTTGAGCCAAGTCCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTCGGGGTGAAAGTAACCACATACACTGTTGAGCCAAGTCCACAC  450

seq1  ACCAAGGATATATTTACCTACCTGTGTTTACTGCAGCACTGTCCACCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGATATATTTACCTACCTGTGTTTACTGCAGCACTGTCCACCATA  500

seq1  GCTAAGACACAGCATCAGCCTAGATGTCCATCAGTGGGTAAATGGATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACACAGCATCAGCCTAGATGTCCATCAGTGGGTAAATGGATAAG  550

seq1  GAAAATGCGGTTTATATACATAGTGACATTTTCAGCTGTACAGAAAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCGGTTTATATACATAGTGACATTTTCAGCTGTACAGAAAAGGA  600

seq1  GCATATGCTGGAAAATGCACACAAGCGGAAGAGCATCACACTCCATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGCTGGAAAATGCACACAAGCGGAAGAGCATCACACTCCATCTCA  650

seq1  AAGGCAAGTATCATGTATTCTGTCGTATGTGTGATCTATGCTGTACATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGTATCATGTATTCTGTCGTATGTGTGATCTATGCTGTACATAC  700

seq1  ATGTGCAAACTCATACGTTGTCAGATGACCTGAAAGGAGCAATAAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAACTCATACGTTGTCAGATGACCTGAAAGGAGCAATAAAATTG  750

seq1  TGTATGGGAAAGAAATGTGACTAATGGGAGTTAGGCAGGTGTGAGGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGAAAGAAATGTGACTAATGGGAGTTAGGCAGGTGTGAGGGGGG  800

seq1  TAGGGACCAGGGTGTGGAAGGAATTTGTTCATATATGTTTATGAAGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGGGACCAGGGTGTGGAAGGAATTTGTTCATATATGTTTATGAA-GTGG  849

seq1  CTTTACAGTAAGAGAAAAAGGAAATGTG--ATATATATATATATATATAT  898
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTTTACAGTAAGAGAAAAAGGAAATGTGATATATATATATATATATATAT  899

seq1  ATATATATATATATATATGAATGAT  923
      |||||||||||||||||||||||||
seq2  ATATATATATATATATATGAATGAT  924

seq1: chr9_98077788_98078911
seq2: B6Ng01-150H05.g_67_1194 (reverse)

seq1  GAAAAG--CTCACCTA-GAAACATGGCCCTGCTTT-GGTCT-CCTGTCCA  45
      ||||||   ||||||| |||||  || |||||||| ||||| ||||||||
seq2  GAAAAGGTTTCACCTAGGAAACTAGGGCCTGCTTTGGGTCTCCCTGTCCA  50

seq1  -TCTGTTGAATAAAGATAAAATGTTTTCCTTGCAGGAAATGTCTCAG-TG  93
       ||||| |||||||||| ||||| ||||||||||||||||||||||| ||
seq2  TTCTGTGGAATAAAGAT-AAATG-TTTCCTTGCAGGAAATGTCTCAGTTG  98

seq1  TGGGACTCCAAAATCTGGGAGTCCATATTCCTTCTCAGCGAGAGGCTTGG  143
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGGGACTCCAAAATCTGGGAGTCCATATTCCTTCTCAGCGAGAGGCTT-G  147

seq1  GTAGAAAAGAACAGCTAGGTTTACAGCGTCTACTGTGTGTCTGCATGGGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAAGAACAGCTAGGTTTACAGCGTCTACTGTGTGTCTGCATGGGA  197

seq1  AACCCATGCTTTGTACCTGGCTTTCTGCTTGGCTGCCTCGGAGAGAACCA  243
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACCCATGCTTTGTACCTGGCTTTCTGCTTGGCTGCCTCGGAGAGACCCA  247

seq1  ACTGCTGGTATCTCTGCTGGAAGAGACACACCCTAGTGCGGCCTCCTTTA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGTATCTCTGCTGGAAGAGACACACCCTAGTGCGGCCTCCTTTA  297

seq1  CAGGGTTGCTCAACTGTCTGCTCCCTCCATCCTGCAGCTTAGAGCTTTAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGCTCAACTGTCTGCTCCCTCCATCCTGCAGCTTAGAGCTTTAG  347

seq1  CTCCAGCAACCAAGACTGATTAGAGGCTGCAGCCACAGGTCCAGGAGGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCAACCAAGACTGATTAGAGGCTGCAGCCACAGGTCCAGGAGGAA  397

seq1  AGAGGCAATGCATTGCAGATACTCTGCACAGCATTCTCCTTTAGCTTCCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAATGCATTGCAGATACTCTGCACAGCATTCTCCTTTAGCTTCCC  447

seq1  TCACGTGACTGTCCATGGCCCAAGAAGGCAGATGCCAGTTGCACACCTAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGACTGTCCATGGCCCAAGAAGGCAGATGCCAGTTGCACACCTAC  497

seq1  CCCAGGTACCACACTTACTTCCACTGAGATTCTCACCAGGCAGGATGCTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTACCACACTTACTTCCACTGAGATTCTCACCAGGCAGGATGCTC  547

seq1  CAACCTTTGCAGGCCTGTGGCTCTGGCCACATCCTATTCCTTTTGTCTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTGCAGGCCTGTGGCTCTGGCCACATCCTATTCCTTTTGTCTAT  597

seq1  ATGTTCCCTCTTTATTCCTGTCTACCACTGTGGATAGGACAGCTTTTGCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCCTCTTTATTCCTGTCTACCACTGTGGATAGGACAGCTTTTGCT  647

seq1  TGGGGAACCCACAGTTTCAGGAATGCCATGGAAGTTCTCCCAAATATAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACCCACAGTTTCAGGAATGCCATGGAAGTTCTCCCAAATATAAG  697

seq1  GCATCCAATCCTTCTACCTACACAGCAGTTTTCAATCCTCGTCCCCAGCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAATCCTTCTACCTACACAGCAGTTTTCAATCCTCGTCCCCAGCT  747

seq1  CTGGCCCCACAGAGTTCCTCAAGGCTTTCCCTGGTCTCCCTAACTTACAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCCACAGAGTTCCTCAAGGCTTTCCCTGGTCTCCCTAACTTACAC  797

seq1  TCTCATCCATCCCTCTGATGGAACCCTCTGTTCTATGTAAACCAAGTGGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCCATCCCTCTGATGGAACCCTCTGTTCTATGTAAACCAAGTGGG  847

seq1  ACTGTTTCTGTTTCCTGGAGGGACAATGATGTCCCCACTTGTGACTTTGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTGTTTCCTGGAGGGACAATGATGTCCCCACTTGTGACTTTGG  897

seq1  CCTCGATACTTTGTCTCCCTGGTGATTCTCATTCAGTAAATGCTTTGACC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGATACTTTGTCTCCCTGGTGATTCTCATTCAGTAAATGCTTTGACC  947

seq1  CGGCTACTACCTGTCTGTCAAAATTCTGCTTAGATGTCACCTCACCCAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTACTACCTGTCTGTCAAAATTCTGCTTAGATGTCACCTCACCCAGG  997

seq1  AAGATTCCTAGATGTCTCCAGACAGACTGGGCTGCCCTCTTGGAGGTTCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCCTAGATGTCTCCAGACAGACTGGGCTGCCCTCTTGGAGGTTCC  1047

seq1  CAACTCCCTCATGCTTTCTCTACTAGAGTCCTTGTCATGCCATTCCGGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCTCATGCTTTCTCTACTAGAGTCCTTGTCATGCCATTCCGGTA  1097

seq1  TCATCTGTCCGCTCATCTGCTCTGTGAATTC  1124
      |||||||||||||||||||||||||||||||
seq2  TCATCTGTCCGCTCATCTGCTCTGTGAATTC  1128