BAC Information

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BAC

Clone NameB6Ng01-150O04
Chromosome17 (Build37)9 (Build37)
Map Location 65,708,106 - 65,708,638109,308,936 - 109,310,108
singlet/doubletsingletsinglet
Overlap geneE130009J12Rik
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneLOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150O04.bB6Ng01-150O04.g
ACCDH946849DH946850
length1,0221,148
definitionDH946849|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O04, 5' end.DH946850|Mus musculus domesticus DNA, BAC clone: B6Ng01-150O04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,708,106 - 65,708,638)(109,308,936 - 109,310,108)
sequence
gaattcagcattgtttacaattttttggtataaaacccagctctattgta
atcccttatgatgggtattagcaaacggtcccaacagcaaatattgatga
gtgggctattttagcctgtattaatgagggcctgtttgataatcattatc
ccaaacatccgttaatgacctttctaaaggaacatccagtcattttccct
caagtggtaaggaaaacacccattaaagatgcagttaacgtgtttactga
tggatcaaaaaccggatgtggagtatatatggtagaggggaaagatcctg
tggtcaggcagtatcatccctgtactccgcagatggtggaattataaata
gttattgaggtcattaaggattgtgattttccttttaatctaatttcaga
ttcacaatatgtagtcaatttagttttatccctaaaagtggctggccaaa
taaaagctcgtagtaccatccaagccttggccttacaattacagaagttg
ctgtgggaaagacgccaaccattatatattggacatgtccgtgcccatag
tgggcttccaggacccttaagtaggggaaatgatattgtggataattgta
cttgtatgaagttcatatttttagcatcccctatggagttagcctcacaa
tttcattctaaatttcatgttaaaactctgcagagaaaatttggaatctc
tagagcacaagctcaggatgtagtcactacctgtggaagttgccttgagt
ttcaacacccgccttcttatggagtgaatcctagaggattgctccctcta
caggtgtggcagatggatgtgacacatttttcagaatctggcaaattgaa
atatgttcatgtatccattgatacatgttcaggaatagttttatgcatct
tcccatggcaggggaaaaggcctcccatgtatacagcattgtttggagcc
tgggcagcttggggtaaccccacaacttaaaacagatatgccaaaccttg
ttgtcttttttgtcacagatgg
gaattcatcagttagaaaaatcatgaaattttgttttgtgtttttatttt
tatttaaagatgtatttatcttatatgtgagtacaccattggtctcttca
gactcaccagaagagggcaccggatccctttacacatggttgtgagccac
catgtggttccagggaattgaactcaggacctaaggaagtgcattcaatg
cttttaactgctgaatcatctctccagtccttgctttcttttttcaagac
attttctctgtgtagtcctggctgtcctttaactttctctgcagacactt
ttctcaaactcacagagatccagctgtctctgcttcctgagtgctggggt
taaagacagaaccatccacatcaggaaatttaaattaactatcactgcag
aatttgtcatcagtaaggaggagcaggttgcatgtcagctgttcacaggg
taaaggcacttgcaactgaccctcatgacttgactttggtcaccaggacc
taggatgtagaaggtggaaaccggccctccaaagctgtcctctggcttcc
atgggtgtgccaaggcaaatgttaatttaaaataattatttaatgggact
ggggagaagaattattgattaagagcatgcactattgttctatgggattg
agttcctctgcctgtaaggtttacatccacctgtaactttagttccagga
agttctgtgtctgatatgtatcagcctctgctctccagggcccctctagt
cacattcataagccaacccctccatatgtcaaaccacccatatatgtcac
cccccccccagcttataccacccccaacctgtaacccataacatatgcta
ctccatccatttgccatccccaacattgcacccacaggatatgccaccac
atcatctgccatccccagcatctgctattccacagcatatgccacccaca
gtacccgtgtccccagcatttactgccctcagtatacatactaaaatatt
tgttttatgttgttaacaaagataatcttgagcttgtgaaatgtcgcagt
cagacacctgactgttctgaaattttagttcaatccagcaaaccatggag
gctcaactatctgccataggatctggatgcctctcggtgtctgaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65708106_65708638
seq2: B6Ng01-150O04.b_75_610

seq1  TAAAACCCAGCTCTATTGTAATCCCTTATGATGGGTATCAGCAAAAGGTC  50
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TAAAACCCAGCTCTATTGTAATCCCTTATGATGGGTATTAGCAAACGGTC  50

seq1  CTAACAGCAAATATTGATGAGTGGGCTATTTTAGCCTGTATTAATGAGGG  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCAAATATTGATGAGTGGGCTATTTTAGCCTGTATTAATGAGGG  100

seq1  CCCATTTGATAATCATTATCCCAAACATCCGTTAATGACCTTTTTTAAGG  150
      ||  ||||||||||||||||||||||||||||||||||||||| | ||||
seq2  CCTGTTTGATAATCATTATCCCAAACATCCGTTAATGACCTTTCTAAAGG  150

seq1  AACATCCAGTCATTTTCCCTCAAGTGGTGAGGAAAACACCCATTAAGGAT  200
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  AACATCCAGTCATTTTCCCTCAAGTGGTAAGGAAAACACCCATTAAAGAT  200

seq1  GCAGTTAACGTGTTTACTGATGGATCAAAAACCAGATGTGGAGTATATAT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGTTAACGTGTTTACTGATGGATCAAAAACCGGATGTGGAGTATATAT  250

seq1  GGTAGAGGGGAAAGATCCTGTGGTCAGGCAGT---ATCCCTGTACTCCGC  297
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  GGTAGAGGGGAAAGATCCTGTGGTCAGGCAGTATCATCCCTGTACTCCGC  300

seq1  AGATGGTGGAATTACAAATAGTTATTGAGGTCATTAAGGATTGTGATTTT  347
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGATGGTGGAATTATAAATAGTTATTGAGGTCATTAAGGATTGTGATTTT  350

seq1  CCTTTTAATCTAATTTCGGATTCACAATATGTAGTTAATTTAGTTTTATC  397
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CCTTTTAATCTAATTTCAGATTCACAATATGTAGTCAATTTAGTTTTATC  400

seq1  CCTAGAAGTGACAGGCCAAATAAAAGCTCGTAGTACCATCCAAGCCTTAG  447
      |||| ||||| | ||||||||||||||||||||||||||||||||||| |
seq2  CCTAAAAGTGGCTGGCCAAATAAAAGCTCGTAGTACCATCCAAGCCTTGG  450

seq1  CCTTACAATTACAGAAGTTGCTGTGGGAAAGATGTCAACCATTATATATT  497
      |||||||||||||||||||||||||||||||| | |||||||||||||||
seq2  CCTTACAATTACAGAAGTTGCTGTGGGAAAGACGCCAACCATTATATATT  500

seq1  GGACGTGTTCGTGCCCATAGTGGCCTTCCAGGACCC  533
      |||| ||| |||||||||||||| ||||||||||||
seq2  GGACATGTCCGTGCCCATAGTGGGCTTCCAGGACCC  536

seq1: chr9_109308936_109310108
seq2: B6Ng01-150O04.g_68_1215

seq1  GAATTCATCAGTTAGAAAAATCATGAAATTTTGTTTTGTGTTTTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTAGAAAAATCATGAAATTTTGTTTTGTGTTTTTATTTT  50

seq1  TATTTAAAGATGTATTTATCTTATATGTGAGTACACCATTGGTCTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAGATGTATTTATCTTATATGTGAGTACACCATTGGTCTCTTCA  100

seq1  GACTCACCAGAAGAGGGCACCGGATCCCTTTACACATGGTTGTGAGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACCAGAAGAGGGCACCGGATCCCTTTACACATGGTTGTGAGCCAC  150

seq1  CATGTGGTTCCAGGGAATTGAACTCAGGACCTAAGGAAGTGCATTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTTCCAGGGAATTGAACTCAGGACCTAAGGAAGTGCATTCAATG  200

seq1  CTTTTAACTGCTGAATCATCTCTCCAGTCCTTGCTTTCTTTTTTCAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACTGCTGAATCATCTCTCCAGTCCTTGCTTTCTTTTTTCAAGAC  250

seq1  ATTTTCTCTGTGTAGTCCTGGCTGTCCTTTAACTTTCTCTGCAGACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGTGTAGTCCTGGCTGTCCTTTAACTTTCTCTGCAGACACTT  300

seq1  TTCTCAAACTCACAGAGATCCAGCTGTCTCTGCTTCCTGAGTGCTGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAACTCACAGAGATCCAGCTGTCTCTGCTTCCTGAGTGCTGGGGT  350

seq1  TAAAGACAGAACCATCCACATCAGGAAATTTAAATTAACTATCACTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACAGAACCATCCACATCAGGAAATTTAAATTAACTATCACTGCAG  400

seq1  AATTTGTCATCAGTAAGGAGGAGCAGGTTGCATGTCAGCTGTTCACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTCATCAGTAAGGAGGAGCAGGTTGCATGTCAGCTGTTCACAGGG  450

seq1  TAAAGGCACTTGCAACTGACCCTCATGACTTGACTTTGGTCACCAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCACTTGCAACTGACCCTCATGACTTGACTTTGGTCACCAGGACC  500

seq1  TAGGATGTAGAAGGTGGAAACCGGCCCTCCAAAGCTGTCCTCTGGCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGTAGAAGGTGGAAACCGGCCCTCCAAAGCTGTCCTCTGGCTTCC  550

seq1  ATGGGTGTGCCAAGGCAAATGTTAATTTAAAATAATTATTTAATGGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTGCCAAGGCAAATGTTAATTTAAAATAATTATTTAATGGGACT  600

seq1  GGGGAGAAGAATTATTGATTAAGAGCATGCACTATTGTTCTATGGGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGAATTATTGATTAAGAGCATGCACTATTGTTCTATGGGATTG  650

seq1  AGTTCCTCTGCCTGTAAGGTTTACATCCACCTGTAACTTTAGTTCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCTGCCTGTAAGGTTTACATCCACCTGTAACTTTAGTTCCAGGA  700

seq1  AGTTCTGTGTCTGATATGTATCAGCCTCTGCTCTCCAGGGCCCCTCTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGTCTGATATGTATCAGCCTCTGCTCTCCAGGGCCCCTCTAGT  750

seq1  CACATTCATAAGCCAACCCCTCCATATGTCAAACCACCCATATATGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCATAAGCCAACCCCTCCATATGTCAAACCACCCATATATGTCAC  800

seq1  CCCCCCCCCAGCTTATACCACCCCCAACCTGTAACCCATAACATATGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCAGCTTATACCACCCCCAACCTGTAACCCATAACATATGCTA  850

seq1  CTCCATCCATTTGCCATCCCCAACATTGCCACCCACAGGATATGCCACCA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCCATCCATTTGCCATCCCCAACATTG-CACCCACAGGATATGCCACCA  899

seq1  CATCATCTGCCATCCCCAGCATCTGCTATTCCACAGCATATGCCACCCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTGCCATCCCCAGCATCTGCTATTCCACAGCATATGCCACCCAC  949

seq1  AGTACCCGTGTCCCCCAGCATTTACTGCCCCTCAGTATACATAACTAAAA  1000
      ||||||||||| ||||||||||||||| |||||||||||||| |||||||
seq2  AGTACCCGTGT-CCCCAGCATTTACTG-CCCTCAGTATACAT-ACTAAAA  996

seq1  TATTTTGTTTTTATTGTTGTTTAACAAAAGATAATCTTGGAGGCTTGTGA  1050
      || ||||||||   ||||| ||||| |||||||||||||   ||||||||
seq2  TA-TTTGTTTT--ATGTTG-TTAAC-AAAGATAATCTTG--AGCTTGTGA  1039

seq1  GATGGTCGGCAGTCAAGGACA-CTGACTGTTCTGAAAATTTTTAGTTCAA  1099
       || ||| |||||||  |||| |||||||||||||||  |||||||||||
seq2  AAT-GTC-GCAGTCA--GACACCTGACTGTTCTGAAA--TTTTAGTTCAA  1083

seq1  ATCCCAGCAAACACATGGAGGCTCAAAACTATCTGCAATGAGATCT-GAT  1148
         ||||||||| |||||||||||  |||||||||| ||  ||||| |||
seq2  --TCCAGCAAAC-CATGGAGGCTC--AACTATCTGCCATAGGATCTGGAT  1128

seq1  GCCCTCTTCTGGTGTGTCTGAAGTA  1173
      |||    ||| | ||||||||||||
seq2  GCC----TCTCG-GTGTCTGAAGTA  1148