BAC Information

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BAC

Clone NameB6Ng01-151D06
Chromosome9 (Build37)
Map Location 89,520,570 - 89,700,465
singlet/doubletdoublet
Overlap geneTmed3, B230218L05Rik
Upstream geneLOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169
Downstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151D06.bB6Ng01-151D06.g
ACCDH947088DH947089
length836849
definitionDH947088|Mus musculus domesticus DNA, BAC clone: B6Ng01-151D06, 5' end.DH947089|Mus musculus domesticus DNA, BAC clone: B6Ng01-151D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,520,570 - 89,521,401)(89,699,617 - 89,700,465)
sequence
gaattctcagagactagcatctgccccactctagttcttcttgcttcagt
tctttcaaaacctttctctctaatatgccccatattctctcaaaatgcaa
aactatatctttctgcacatttcctttctggtctccttcctaatgtcttt
cattatctgtgcacatacttactttctcccttttcttcagagagatgatg
ggaacagaggaaaaatgagcaaaatcagaattctccttagggacaggcaa
aggctatcttcattcacacatgatactgtctctctctctttctttctttt
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctctctctctctttctctctctctttctttctttctttcttt
ctttctgttttcttcctttcttccttttgtctatcataattagatctcct
ttgggtgtgctatacatatacctcagtattagaaaggacacaggtgagaa
gcattggtgttattgctttttacctgatggctatataggtacttgagact
acttctaactcagtctcacctgagctttggtttctgcgactatagaagtg
aaacaagaaggctcatagggttgggaagaagattaaataaatgcatgtgt
aagcttcatcataggcattcagccaatttgtatgacaagagagacaaaga
gaggaagaaagggagaaggaaggagagagatgaacgaaggggatgagaaa
agaatgcatgggagagaggaagagataaagggcaagaagggaaatagaaa
gggaagaagggagggaaagaaaacgggaggaaggga
gaattcaataggatggccataagaaatacacatgttaagcaactttagat
actgacctgtgagctttgtgtgtgtgccagaggagcaaagtgacaagagt
ggccttggcaatgaacttctacctgctctagcatcacctttcagttatgg
aggcaaagtaggagccatctttgaagatgcgctggagttttgagtacttg
tgagttttcgtgtatttagagacactccaccagggttgtggcaaaaaaca
aaacaaaacaaaacaaaacaaaacggtgggagtctcaaaaagagacagaa
aaactgtttccctagatgaaaaggtgaaccactgtgctttctcttctcac
ggtttgggtctctgacaggtggtgagagtggcccggtagagtgacatctt
ctagttaggtaactgctttcctcactcctgctggtgagaagaagccatct
tcctcctctgcaaatgcttcatcctctgcatccttcagaactgagcacac
gttaaccctcgctctgctttctcatctggaagaaaaggaggctagaccat
aggtctaacactgcccagacccagcttcactcagaggctgacataggggt
ttgggggtgggtttagaccacctattggattgtaagtcaggttcctccta
tctctgaccgggctggactccttcgcatgtcaaagcgctaacttcttcca
gtccaggggctgcgtttgattttttcactgtgcagaggcttcaatcctgc
atgcgtctttcatgaaccttctatctttcaagtcagagggtggaaactct
ttatttcttggtcctgtttaaggagtcgctcgcaatagatgcatattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89520570_89521401
seq2: B6Ng01-151D06.b_41_876

seq1  GAATTCTCAGAGACTAGCATCTGCCCCACTCTAGTTCTTCTTGCTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGACTAGCATCTGCCCCACTCTAGTTCTTCTTGCTTCAGT  50

seq1  TCTTTCAAAACCTTTCTCTCTAATATGCCCCATATTCTCTCAAAATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAAACCTTTCTCTCTAATATGCCCCATATTCTCTCAAAATGCAA  100

seq1  AACTATATCTTTCTGCACATTTCCTTTCTGGTCTCCTTCCTAATGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATCTTTCTGCACATTTCCTTTCTGGTCTCCTTCCTAATGTCTTT  150

seq1  CATTATCTGTGCACATACTTACTTTCTCCCTTTTCTTCAGAGAGATGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCTGTGCACATACTTACTTTCTCCCTTTTCTTCAGAGAGATGATG  200

seq1  GGAACAGAGGAAAAATGAGCAAAATCAGAATTCTCCTTAGGGACAGGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAGGAAAAATGAGCAAAATCAGAATTCTCCTTAGGGACAGGCAA  250

seq1  AGGCTATCTTCATTCACACATGATACTGTCTCTCTCTCTTTCTTTCTTT-  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGCTATCTTCATTCACACATGATACTGTCTCTCTCTCTTTCTTTCTTTT  300

seq1  ---TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  346
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  350

seq1  CTTTCTTTCTCTCTCTCTCTTTCTCTCTCTCTTTCTTTCTTTCTTTCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTCTCTCTCTCTTTCTCTCTCTCTTTCTTTCTTTCTTTCTTT  400

seq1  CTTTCTGTTTTCTTCCTTTCTTCCTTTTGTCTATCATAATTAGATCTCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTTTCTTCCTTTCTTCCTTTTGTCTATCATAATTAGATCTCCT  450

seq1  TTGGGTGTGCTATACATATACCTCAGTATTAGAAAGGACACAGGTGAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTGCTATACATATACCTCAGTATTAGAAAGGACACAGGTGAGAA  500

seq1  GCATTGGTGTTATTGCTTTTTACCTGATGGCTATATAGGTACTTGAGACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTGTTATTGCTTTTTACCTGATGGCTATATAGGTACTTGAGACT  550

seq1  ACTTCTAACTCAGTCTCACCTGAGCTTTGGTTTCTGCGACTATAGAAGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAACTCAGTCTCACCTGAGCTTTGGTTTCTGCGACTATAGAAGTG  600

seq1  AAACAAGAAGGCTCATAGGGTTGGGAAGAAGATTAAATAAATGCATGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGAAGGCTCATAGGGTTGGGAAGAAGATTAAATAAATGCATGTGT  650

seq1  AAGCTTCATCATAGGCATTCAGCCAATTTGTATGACAAGAGAGACAAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCATCATAGGCATTCAGCCAATTTGTATGACAAGAGAGACAAAGA  700

seq1  GAGGAAGAAAGGGAGAAGGAAGGAGAGAGATGAACGAAGGGGATGAGAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAAAGGGAGAAGGAAGGAGAGAGATGAACGAAGGGGATGAGAAA  750

seq1  AGAAGGCATGGGAGAGAGGAAGAGATAAAGGGCAAGAAGGGAAATAGAAA  796
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCATGGGAGAGAGGAAGAGATAAAGGGCAAGAAGGGAAATAGAAA  800

seq1  GGGAAGAAGGGAGGGAAGGAAAACGGGAGGAAGGGA  832
      ||||||||||||||||| ||||||||||||||||||
seq2  GGGAAGAAGGGAGGGAAAGAAAACGGGAGGAAGGGA  836

seq1: chr9_89699617_89700465
seq2: B6Ng01-151D06.g_68_916 (reverse)

seq1  TAAATATGCATCTATTGCGGGCTGCTCCTTAAACAGGACCAAGAAATAAT  50
      ||||||||||||||||||| ||  ||||||||||||||||||||||||| 
seq2  TAAATATGCATCTATTGCGAGCGACTCCTTAAACAGGACCAAGAAATAA-  49

seq1  AGAGTTTCCACCCTCTGACTTGAAGGATAGAAGGTTCAATGAAAGACGCA  100
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  AGAGTTTCCACCCTCTGACTTGAAAGATAGAAGGTTC-ATGAAAGACGCA  98

seq1  TGCAGGATTGAAGCCTCTGCACAGTG-AAAAATCAAACGCAGCCCCTGGA  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCAGGATTGAAGCCTCTGCACAGTGAAAAAATCAAACGCAGCCCCTGGA  148

seq1  CTGGAAGAAGTTAGCGCTTTGACATGCG-AGGAGTCCAGCCCGGTCAGAG  198
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGAAGAAGTTAGCGCTTTGACATGCGAAGGAGTCCAGCCCGGTCAGAG  198

seq1  ATGGGAGGAACCTGACTTACAATCCAATAGGTGGTCTAAACCCACCCCCA  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGAACCTGACTTACAATCCAATAGGTGGTCTAAACCCACCCCCA  248

seq1  AACCCCTATGTCAGCCTCTGAGTGAAGCTGGGTCTGGGCAGTGTTAGACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTATGTCAGCCTCTGAGTGAAGCTGGGTCTGGGCAGTGTTAGACC  298

seq1  TATGGTCTAGCCTCCTTTTCTTCCAGATGAGAAAGCAGAGCGAGGGTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCTAGCCTCCTTTTCTTCCAGATGAGAAAGCAGAGCGAGGGTTAA  348

seq1  CGTGTGCTCAGTTCTGAAGGATGCAGAGGATGAAGCATTTGCAGAGGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCTCAGTTCTGAAGGATGCAGAGGATGAAGCATTTGCAGAGGAGG  398

seq1  AAGATGGCTTCTTCTCACCAGCAGGAGTGAGGAAAGCAGTTACCTAACTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTTCTTCTCACCAGCAGGAGTGAGGAAAGCAGTTACCTAACTA  448

seq1  GAAGATGTCACTCTACCGGGCCACTCTCACCACCTGTCAGAGACCCAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTCACTCTACCGGGCCACTCTCACCACCTGTCAGAGACCCAAAC  498

seq1  CGTGAGAAGAGAAAGCACAGTGGTTCACCTTTTCATCTAGGGAAACAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGAAGAGAAAGCACAGTGGTTCACCTTTTCATCTAGGGAAACAGTT  548

seq1  TTTCTGTCTCTTTTTGAGACTCCCACCGTTTTGTTTTGTTTTGTTTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTCTTTTTGAGACTCCCACCGTTTTGTTTTGTTTTGTTTTGTT  598

seq1  TTGTTTTTTGCCACAACCCTGGTGGAGTGTCTCTAAATACACGAAAACTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTGCCACAACCCTGGTGGAGTGTCTCTAAATACACGAAAACTC  648

seq1  ACAAGTACTCAAAACTCCAGCGCATCTTCAAAGATGGCTCCTACTTTGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTACTCAAAACTCCAGCGCATCTTCAAAGATGGCTCCTACTTTGCC  698

seq1  TCCATAACTGAAAGGTGATGCTAGAGCAGGTAGAAGTTCATTGCCAAGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACTGAAAGGTGATGCTAGAGCAGGTAGAAGTTCATTGCCAAGGC  748

seq1  CACTCTTGTCACTTTGCTCCTCTGGCACACACACAAAGCTCACAGGTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGTCACTTTGCTCCTCTGGCACACACACAAAGCTCACAGGTCAG  798

seq1  TATCTAAAGTTGCTTAACATGTGTATTTCTTATGGCCATCCTATTGAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAAGTTGCTTAACATGTGTATTTCTTATGGCCATCCTATTGAATT  848

seq1  C  849
      |
seq2  C  849