BAC Information

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BAC

Clone NameB6Ng01-151O23
Chromosome9 (Build37)
Map Location 42,348,180 - 42,426,928
singlet/doubletdoublet
Overlap geneGrik4
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-151O23.bB6Ng01-151O23.g
ACCDH947633DH947634
length972527
definitionDH947633|Mus musculus domesticus DNA, BAC clone: B6Ng01-151O23, 5' end.DH947634|Mus musculus domesticus DNA, BAC clone: B6Ng01-151O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,348,180 - 42,349,153)(42,426,396 - 42,426,928)
sequence
gaattctgcagtttataacactgccagtcagggacagatcgatccaaggg
tgtacaatgtgactaccaagtctgcatgccaaagatcagagctatcacat
gctaatgtccccatgtcctgattcttctgcctgtcaccttcttcaggaat
agccttacttcaggagagcctgacacagcagtgcagtcaatgctccacat
agaatcacccaaaggctatgcttagatccctcacaatcacaacagctgaa
cgagactcccgattccctggtagtagagttatcggcaaagtgaatgtact
ctgagaagcccagctgcagcactgttctagaagccaaaaaacttacaaaa
ccagatggcacccagtaaatgcatggtacattagtgcccactctcaatga
cccacaccaagtcagagtagacagagcagtgaaatctacatagagtttga
acgtcatcttctgtaatcttgccagtgaagtacaatcagcaaaggtgatt
agtgcttgtagtgcttccttcttccctctgttagtagagacgttaatcat
cagagaaatggccaacatgccaaagcaagagacaaagagaacaagcccta
aagtctgctggggcaccagtactcttcaatagttagaattatccctgaat
agtgaatgaatgaataagtaatcaactagttctttaattacgaattagga
aactggagagatggctgagttggtaaagtactttctgtgcaaacataaag
gacctgaattcagatcttcagcacccaagtaaaactggaggcatggtggt
gcacacctgtaatcctgaagatgaggaggcagaaacaggaagatcctggg
gcttaatcaagccaaagctgtgagcaccagagtcaatgagagatcctatc
tcaagctaaggtagagagtgactgagaagggcattcaatgtcaccatgac
ttccacatgtttgcaagtggac
attatccgaatacacaaagaacataaatacatctttttaaaaacttatag
aaatcagtattaaaaatatatgaaggaatgggggtgggaggctaaggtca
gtggtagagtggctcccccacccccgccctgatttccaataccaccagac
caatactacagaactgcatagaactgagccctaagcaagcatactgaccc
aattagtattacacaccgataaaattaactttattggtgagagccccttc
aggatgactttcagaaatgcatcggaaaggcaaatggaacattgaattgt
tttacaggacttttttttttctgttaacatgtttttcagtaatgaatttt
taaaatatatattttataatgaacatggaaaggagtcaccatcagcagcc
ctcccccccgccccccccccccggtaccatttccagcccagcctggtcag
gacccaggacccaggactctgcctgtcttggggctttcttcatgtgatgg
ggaccgctgcataagcagtgccctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42348180_42349153
seq2: B6Ng01-151O23.b_47_1018

seq1  GAATTCTGCAGTTTATAACACTGCCAGTCAGGGACAGATCGATCCAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGTTTATAACACTGCCAGTCAGGGACAGATCGATCCAAGGG  50

seq1  TGTACAATGTGACTACCAAGTCTGCATGCCAAAGATCAGAGCTATCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATGTGACTACCAAGTCTGCATGCCAAAGATCAGAGCTATCACAT  100

seq1  GCTAATGTCCCCATGTCCTGATTCTTCTGCCTGTCACCTTCTTCAGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGTCCCCATGTCCTGATTCTTCTGCCTGTCACCTTCTTCAGGAAT  150

seq1  AGCCTTACTTCAGGAGAGCCTGACACAGCAGTGCAGTCAATGCTCCACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACTTCAGGAGAGCCTGACACAGCAGTGCAGTCAATGCTCCACAT  200

seq1  AGAATCACCCAAAGGCTATGCTTAGATCCCTCACAATCACAACAGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACCCAAAGGCTATGCTTAGATCCCTCACAATCACAACAGCTGAA  250

seq1  CGAGACTCCCGATTCCCTGGTAGTAGAGTTATCGGCAAAGTGAATGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACTCCCGATTCCCTGGTAGTAGAGTTATCGGCAAAGTGAATGTACT  300

seq1  CTGAGAAGCCCAGCTGCAGCACTGTTCTAGAAGCCAAAAAACTTACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGCCCAGCTGCAGCACTGTTCTAGAAGCCAAAAAACTTACAAAA  350

seq1  CCAGATGGCACCCAGTAAATGCATGGTACATTAGTGCCCACTCTCAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGCACCCAGTAAATGCATGGTACATTAGTGCCCACTCTCAATGA  400

seq1  CCCACACCAAGTCAGAGTAGACAGAGCAGTGAAATCTACATAGAGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCAAGTCAGAGTAGACAGAGCAGTGAAATCTACATAGAGTTTGA  450

seq1  ACGTCATCTTCTGTAATCTTGCCAGTGAAGTACAATCAGCAAAGGTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCATCTTCTGTAATCTTGCCAGTGAAGTACAATCAGCAAAGGTGATT  500

seq1  AGTGCTTGTAGTGCTTCCTTCTTCCCTCTGTTAGTAGAGACGTTAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGTAGTGCTTCCTTCTTCCCTCTGTTAGTAGAGACGTTAATCAT  550

seq1  CAGAGAAATGGCCAACATGCCAAAGCAAGAGACAAAGAGAACAAGCCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAATGGCCAACATGCCAAAGCAAGAGACAAAGAGAACAAGCCCTA  600

seq1  AAGTCTGCTGGGGCACCAGTACTCTTCAATAGTTAGAATTATCCCTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGCTGGGGCACCAGTACTCTTCAATAGTTAGAATTATCCCTGAAT  650

seq1  AGTGAATGAATGAATAAGTAATCAACTAGTTCTTTAATTACGAATTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGAATGAATAAGTAATCAACTAGTTCTTTAATTACGAATTAGGA  700

seq1  AACTGGAGAGATGGCTGAGTTGGTAAAGTACTTTCTGTGCAAACAT-AAG  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACTGGAGAGATGGCTGAGTTGGTAAAGTACTTTCTGTGCAAACATAAAG  750

seq1  GACCTGAATTCAGATCTTCAGCACCCAAGTAAAACTGGAGGCATGGTGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAATTCAGATCTTCAGCACCCAAGTAAAACTGGAGGCATGGTGGT  800

seq1  GCACACCTGTAATCCTGAAGATGAGGAGGCAGAAACAGGAAGATCCTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTGTAATCCTGAAGATGAGGAGGCAGAAACAGGAAGATCCTGGG  850

seq1  GCTTAATCAAGCCAAAGCTGTGAGCACCAGAGTCAATGAGAGATCCTATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATCAAGCCAAAGCTGTGAGCACCAGAGTCAATGAGAGATCCTATC  900

seq1  TCAAAGCTAAGGTAGAGAGTGACTGAGAAGGGCATTCAATGTCAACCAAT  949
      || |||||||||||||||||||||||||||||||||||||||||  | ||
seq2  TC-AAGCTAAGGTAGAGAGTGACTGAGAAGGGCATTCAATGTCA--CCAT  947

seq1  GACTTCCACATGTTTGCAAGTGGAC  974
      |||||||||||||||||||||||||
seq2  GACTTCCACATGTTTGCAAGTGGAC  972

seq1: chr9_42426396_42426928
seq2: B6Ng01-151O23.g_69_601 (reverse)

seq1  TACTGGGCACTGCTTATGCAGCGGTCCCCATCACATGAAGAAAGCCCCAA  50
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCACTGCTTATGCAGCGGTCCCCATCACATGAAGAAAGCCCCAA  50

seq1  GACAGGCAGAGTCCTGGGTCCTGGGTCCTGGCCAGGCTGGGCTGGAAATG  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GACAGGCAGAGTCCTGGGTCCTGGGTCCTGACCAGGCTGGGCTGGAAATG  100

seq1  GTACCGGGGGGGGGGGGCGGGGGGGAGGGCTGCTGATGGTGACTCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGGGGGGGGGGGGCGGGGGGGAGGGCTGCTGATGGTGACTCCTTTC  150

seq1  CATGTTCATTATAAAATATATATTTTAAAAATTCATTACTGAAAAACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATTATAAAATATATATTTTAAAAATTCATTACTGAAAAACATG  200

seq1  TTAACAGAAAAAAAAAAGTCCTGTAAAACAATTCAATGTTCCATTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGAAAAAAAAAAGTCCTGTAAAACAATTCAATGTTCCATTTGCCT  250

seq1  TTCCGATGCATTTCTGAAAGTCATCCTGAAGGGGCTCTCACCAATAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGATGCATTTCTGAAAGTCATCCTGAAGGGGCTCTCACCAATAAAGT  300

seq1  TAATTTTATCGGTGTGTAATACTAATTGGGTCAGTATGCTTGCTTAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATCGGTGTGTAATACTAATTGGGTCAGTATGCTTGCTTAGGGC  350

seq1  TCAGTTCTATGCAGTTCTGTAGTATTGGTCTGGTGGTATTGGAAATCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCTATGCAGTTCTGTAGTATTGGTCTGGTGGTATTGGAAATCAGG  400

seq1  GCGGGGGTGGGGGAGCCACTCTACCACTGACCTTAGCCTCCCACCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGGTGGGGGAGCCACTCTACCACTGACCTTAGCCTCCCACCCCCAT  450

seq1  TCCTTCATATATTTTTAATACTGATTTCTATAAGTTTTTAAAAAGATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATATATTTTTAATACTGATTTCTATAAGTTTTTAAAAAGATGTA  500

seq1  TTTATGTTCTTTGTGTATTCGGATAATGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  TTTATGTTCTTTGTGTATTCGGATAATGAATTC  533