BAC Information

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BAC

Clone NameB6Ng01-154G20
Chromosome9 (Build37)
Map Location 75,121,910 - 75,242,075
singlet/doubletdoublet
Overlap geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6
Upstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501
Downstream geneLeo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154G20.bB6Ng01-154G20.g
ACCDH949474DH949475
length1,2101,076
definitionDH949474|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G20, 5' end.DH949475|Mus musculus domesticus DNA, BAC clone: B6Ng01-154G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,121,910 - 75,123,117)(75,240,988 - 75,242,075)
sequence
gaattcccttacttccttactttaggcagacgttacatttttcctgtgtg
aagccagataataactactgaaggccttaacagttcatgacctctgattc
aaattctaccattatagcctaaaaacaggcacattattctgttttccgta
gctgtaagaaagagcctgaggcccgactctttataaagaaaagggatttg
ttcagaccacagttttggagtatgggttgttttggcctctgataatggcc
tctattgttatgatacagtgtgaccgagaaagtagccagaaacagccacg
tggaagagggaccgtgtgcatggggcttcctctgggtatataagtccact
gtcttcaggtgtggtggtatgtcctgtaatcctaacactcaggagactaa
gtcaggagaaggctggatttgaggccaggctgggctgcctaatgaatact
aggccagtcaagacttcagagcaaaataggtaagtagataagggctgtag
gtgagagtgcttgctgcaggtgtagcaattaagaacagtttgtatccaag
cagcatataaaaacagctgggcttgtccacacatgcctgtaaccaggaag
gcgagaggacggctggggcttgctggccaccagcctggcttcaggttcag
caagagaccttgtctcaagtgagtaaggcagagagtgagagtggggcatc
acattctctggcttccatgtacgcgtgcgccacacacctctggatatgca
ccataaaaaaaaacataaaaagatacatttttaagataaaaaggataaaa
cccactcctccttgcctctgactcatatggagctattcagaggccacgtc
accaagccaccctctttacaatcacactacaagcagggtcaaatgtccag
cttgtggacctttccggagactcaccagaaggccagctccaggttgttac
cgcttgagcctgatgggctcccgcccgcagccgatttgacccttcgaatc
atagttctgccagctccagatctgcagcttcaacccatcttccacaaatg
gacgaatgagcaacggggttggccaggaacggtctcgtcatcccagtctc
tgtgggacttgcgctgtgcgcctgtgcacacctgacaccttggcattaac
tgggcccaggcagaacacttgatggaattcaatgctcctagtgccacact
gaggtcgggt
gaattctttatatactgtggacatggagtctcttatcagatccatgctgt
gtacagagtcttccttttgtgagtgtcttttgaagcacagaacatttaat
tctgatgaaggttggcttttgcatctttagtgttaacgtatctgagaaac
tgctctctactttaaggtcacagtatttacttctgtgttttctttgaagc
attttatagttttagcttggttttctatttacttatttgtttgtttatat
ttatatatttatttattttcatgacagggtttctatgtatagccttggct
gtattagaactaactctgtagactaagctggccttgaactcagagatcca
gccttcctagtgctgggattaatggtgtgcaccatctacatttagatcag
gatttgttttgggttgaattgtgtgtgtgaagtgagggcaggcgtccaat
ttcattattttgcttgtggatatttagttgtccccgagtcttttgatgat
aaggtttttatttacaaatcgaatagcaagacacctttaagaaaaaaaag
aagagttgctcataaacacaaacctccttgcgatctttctcagcttatct
gaggctttagagcaggtcaccaaggacacccagactcagcgcagcaagga
aaaagagcagggaaggatttgaggacgtttcctgctagccagggcagctg
ggatgctgtgtttacagttggcgtgttgctttcactcaggtgcacatgaa
cttgaacagatgcagctgatcctcgactccatccctgttgtgcacgagga
ggatcggcaggagcttctcagcgtgattccagtttacattagaaacgaca
tgactgagccacacagaccgctcactcagctgctgccggggatcagccga
gaagtatggggactttggagtactggactgtctctggagctttagcttgc
gtcatcttgagtgtgttcttttctagagtctgtagggcttcagatggacc
caggcttggactccagcactgttcctcttgaacttgcctagctattgtca
tttctttgctttctgagtctagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_75121910_75123117
seq2: B6Ng01-154G20.b_45_1254

seq1  GAATTCCCTTACTTCCTTACTTTAGGCAGACGTTACATTTTTCCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTACTTCCTTACTTTAGGCAGACGTTACATTTTTCCTGTGTG  50

seq1  AAGCCAGATAATAACTACTGAAGGCCTTAACAGTTCATGACCTCTGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGATAATAACTACTGAAGGCCTTAACAGTTCATGACCTCTGATTC  100

seq1  AAATTCTACCATTATAGCCTAAAAACAGGCACATTATTCTGTTTTCCGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTACCATTATAGCCTAAAAACAGGCACATTATTCTGTTTTCCGTA  150

seq1  GCTGTAAGAAAGAGCCTGAGGCCCGACTCTTTATAAAGAAAAGGGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAAGAAAGAGCCTGAGGCCCGACTCTTTATAAAGAAAAGGGATTTG  200

seq1  TTCAGACCACAGTTTTGGAGTATGGGTTGTTTTGGCCTCTGATAATGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACCACAGTTTTGGAGTATGGGTTGTTTTGGCCTCTGATAATGGCC  250

seq1  TCTATTGTTATGATACAGTGTGACCGAGAAAGTAGCCAGAAACAGCCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTATGATACAGTGTGACCGAGAAAGTAGCCAGAAACAGCCACG  300

seq1  TGGAAGAGGGACCGTGTGCATGGGGCTTCCTCTGGGTATATAAGTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGGGACCGTGTGCATGGGGCTTCCTCTGGGTATATAAGTCCACT  350

seq1  GTCTTCAGGTGTGGTGGTATGTCCTGTAATCCTAACACTCAGGAGACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGGTGTGGTGGTATGTCCTGTAATCCTAACACTCAGGAGACTAA  400

seq1  GTCAGGAGAAGGCTGGATTTGAGGCCAGGCTGGGCTGCCTAATGAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGAAGGCTGGATTTGAGGCCAGGCTGGGCTGCCTAATGAATACT  450

seq1  AGGCCAGTCAAGACTTCAGAGCAAAATAGGTAAGTAGATAAGGGCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTCAAGACTTCAGAGCAAAATAGGTAAGTAGATAAGGGCTGTAG  500

seq1  GTGAGAGTGCTTGCTGCAGGTGTAGCAATTAAGAACAGTTTGTATCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGTGCTTGCTGCAGGTGTAGCAATTAAGAACAGTTTGTATCCAAG  550

seq1  CAGCATATAAAAACAGCTGGGCTTGTCCACACATGCCTGTAACCAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATAAAAACAGCTGGGCTTGTCCACACATGCCTGTAACCAGGAAG  600

seq1  GCGAGAGGACGGCTGGGGCTTGCTGGCCACCAGCCTGGCTTCAGGTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGGACGGCTGGGGCTTGCTGGCCACCAGCCTGGCTTCAGGTTCAG  650

seq1  CAAGAGACCTTGTCTCAAGTGAGTAAGGCAGAGAGTGAGAGTGGGGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACCTTGTCTCAAGTGAGTAAGGCAGAGAGTGAGAGTGGGGCATC  700

seq1  ACATTCTCTGGCTTCCATGTACGCGTGCGCCACACACCTCTGCATATGCA  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACATTCTCTGGCTTCCATGTACGCGTGCGCCACACACCTCTGGATATGCA  750

seq1  CCATAAAAAAAAACATAAAAAGATACA-TTTTAAGATAAAAAGGATAAAA  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCATAAAAAAAAACATAAAAAGATACATTTTTAAGATAAAAAGGATAAAA  800

seq1  CCCACTCCTCCTTGCCTCTGACTCATATGGAGCTATTCAGAGGCCACGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCTCCTTGCCTCTGACTCATATGGAGCTATTCAGAGGCCACGTC  850

seq1  ACCAAGCCACC--CCTTACAATCACACTACAAGCAGGGTCAAATGTCCAG  897
      |||||||||||  | |||||||||||||||||||||||||||||||||||
seq2  ACCAAGCCACCCTCTTTACAATCACACTACAAGCAGGGTCAAATGTCCAG  900

seq1  CTTGT-GAACTTTCCGGAGACTCACCAG-AGGCCAGCTCCAGGTTG-TAC  944
      ||||| || ||||||||||||||||||| ||||||||||||||||| |||
seq2  CTTGTGGACCTTTCCGGAGACTCACCAGAAGGCCAGCTCCAGGTTGTTAC  950

seq1  CGCTGAGGCCTGATGGGCTCC--GCCGCAGCCGATTTGA-CCTTCAGATC  991
      ||||   ||||||||||||||   ||||||||||||||| |||||  |||
seq2  CGCTTGAGCCTGATGGGCTCCCGCCCGCAGCCGATTTGACCCTTCGAATC  1000

seq1  ATAG-TCTGCCAGCTCCAGATCTGCAGCTTCCAACCCATCTTCCACAAAT  1040
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGTTCTGCCAGCTCCAGATCTGCAGCTT-CAACCCATCTTCCACAAAT  1049

seq1  GGACAGATGAGCAAACGGGGTTTGCCCAGGCACTGTCTCGTCATCACAGT  1090
      ||||  |||||| ||||||| ||| ||||| || ||||||||||| ||||
seq2  GGACGAATGAGC-AACGGGG-TTGGCCAGGAACGGTCTCGTCATCCCAGT  1097

seq1  CTCTGTGGG-CCTGCGCTGTGCGCCTGTGCACACATGAGCACCTGGGCAT  1139
      ||||||||| | |||||||||||||||||||||| ||| ||||| |||||
seq2  CTCTGTGGGACTTGCGCTGTGCGCCTGTGCACACCTGA-CACCTTGGCAT  1146

seq1  TAACT-GGCCCAAGCAGACACCATGTAGGGGATTTCACATGGCTCTTCAG  1188
      ||||| |||||| ||||| ||  |  | || |||   ||  |||| | ||
seq2  TAACTGGGCCCAGGCAGA-ACACTTGATGGAATT---CAATGCTCCT-AG  1191

seq1  TGCCACACTGAGGTCAGGGT  1208
      ||||||||||||||| ||||
seq2  TGCCACACTGAGGTC-GGGT  1210

seq1: chr9_75240988_75242075
seq2: B6Ng01-154G20.g_67_1142 (reverse)

seq1  TTTTCTAGACTCCAGGAAAGCAAAGAAATGGACAATAGCCTAAGGGCCAG  50
      ||||||||||||   |||||||||||||| |||||||| |||  ||| ||
seq2  TTTTCTAGACTC--AGAAAGCAAAGAAAT-GACAATAG-CTA--GGCAAG  44

seq1  GTCAAGAGG-ACAGTGCTGGAGTCCAAGGCCTGGGTCCATCTGAAGCCCT  99
       |||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  TTCAAGAGGAACAGTGCTGGAGTCCAA-GCCTGGGTCCATCTGAAGCCCT  93

seq1  ACAGACTCTAGGAAAAGAACACACCTCAAGATGGACGCAAGCTAAAGCCT  149
      |||||||||| |||||||||||| |||||||| |||||||||||||| ||
seq2  ACAGACTCTA-GAAAAGAACACA-CTCAAGAT-GACGCAAGCTAAAG-CT  139

seq1  CCAGAGACAGTCCAGTTACTCCAAAGTCCCCATACCTTCTCGGCTGATCC  199
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  CCAGAGACAGTCCAG-TACTCCAAAGTCCCCATA-CTTCTCGGCTGATCC  187

seq1  CCGGCAGCAGCTGAGTGAGCGGTCTGTGTGGCTCAGTCATGTCGTTTCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGCAGCTGAGTGAGCGGTCTGTGTGGCTCAGTCATGTCGTTTCTA  237

seq1  ATGTAAACTGGAATCACGCTGAGAAGCTCCTGCCGATCCTCCTCGTGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACTGGAATCACGCTGAGAAGCTCCTGCCGATCCTCCTCGTGCAC  287

seq1  AACAGGGATGGAGTCGAGGATCAGCTGCATCTGTTCAAGTTCATGTGCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGATGGAGTCGAGGATCAGCTGCATCTGTTCAAGTTCATGTGCAC  337

seq1  CTGAGTGAAAGCAACACGCCAACTGTAAACACAGCATCCCAGCTGCCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAAAGCAACACGCCAACTGTAAACACAGCATCCCAGCTGCCCTG  387

seq1  GCTAGCAGGAAACGTCCTCAAATCCTTCCCTGCTCTTTTTCCTTGCTGCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCAGGAAACGTCCTCAAATCCTTCCCTGCTCTTTTTCCTTGCTGCG  437

seq1  CTGAGTCTGGGTGTCCTTGGTGACCTGCTCTAAAGCCTCAGATAAGCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTGGGTGTCCTTGGTGACCTGCTCTAAAGCCTCAGATAAGCTGA  487

seq1  GAAAGATCGCAAGGAGGTTTGTGTTTATGAGCAACTCTTCTTTTTTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCGCAAGGAGGTTTGTGTTTATGAGCAACTCTTCTTTTTTTTCT  537

seq1  TAAAGGTGTCTTGCTATTCGATTTGTAAATAAAAACCTTATCATCAAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGTCTTGCTATTCGATTTGTAAATAAAAACCTTATCATCAAAAG  587

seq1  ACTCGGGGACAACTAAATATCCACAAGCAAAATAATGAAATTGGACGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGGACAACTAAATATCCACAAGCAAAATAATGAAATTGGACGCCT  637

seq1  GCCCTCACTTCACACACACAATTCAACCCAAAACAAATCCTGATCTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACTTCACACACACAATTCAACCCAAAACAAATCCTGATCTAAAT  687

seq1  GTAGATGGTGCACACCATTAATCCCAGCACTAGGAAGGCTGGATCTCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGGTGCACACCATTAATCCCAGCACTAGGAAGGCTGGATCTCTGA  737

seq1  GTTCAAGGCCAGCTTAGTCTACAGAGTTAGTTCTAATACAGCCAAGGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGCTTAGTCTACAGAGTTAGTTCTAATACAGCCAAGGCTA  787

seq1  TACATAGAAACCCTGTCATGAAAATAAATAAATATATAAATATAAACAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAAACCCTGTCATGAAAATAAATAAATATATAAATATAAACAAA  837

seq1  CAAATAAGTAAATAGAAAACCAAGCTAAAACTATAAAATGCTTCAAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGTAAATAGAAAACCAAGCTAAAACTATAAAATGCTTCAAAGAA  887

seq1  AACACAGAAGTAAATACTGTGACCTTAAAGTAGAGAGCAGTTTCTCAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAGTAAATACTGTGACCTTAAAGTAGAGAGCAGTTTCTCAGAT  937

seq1  ACGTTAACACTAAAGATGCAAAAGCCAACCTTCATCAGAATTAAATGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAACACTAAAGATGCAAAAGCCAACCTTCATCAGAATTAAATGTTC  987

seq1  TGTGCTTCAAAAGACACTCACAAAAGGAAGACTCTGTACACAGCATGGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCAAAAGACACTCACAAAAGGAAGACTCTGTACACAGCATGGAT  1037

seq1  CTGATAAGAGACTCCATGTCCACAGTATATAAAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAGAGACTCCATGTCCACAGTATATAAAGAATTC  1076