BAC Information

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BAC

Clone NameB6Ng01-154N01
Chromosome9 (Build37)
Map Location 93,044,172 - 93,045,439
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC674371, LOC384967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N01.bB6Ng01-154N01.g
ACCDH949759DH949760
length1,2091,141
definitionDH949759|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N01, 5' end.DH949760|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattctcatagcacagcagaaaggatgccaaaacattcatagcc
atgaaggctcagctcttcaatagaagagagttcctggcacctctgccctt
tcttgaactgtatgagtgtaaaccaaagcctcccttcacacatccactga
aattgcctccataggaataggaaaagttttcaacaatctgagtatgttca
tctattgaccatctcctgtcttctaggcagtatgcctggtgtactcaggg
atacagaaacaagaagctgatgtattcaacactgctgctagaaaatgcga
tttctgctgatataaactagcaaattgtcctcctacccagaactgatgca
aatgagcagtgtctaagctttgaaacaggccacaggctacattttggctt
tgccattcactcaaggaggaggcataaaccagacattatcagacagctct
gtgagtgctgcttaggtccttaggtgctttgagtcagattcactggcgta
tttgtctttctgattggtgagtattctctatctcatgcctaattactgat
taatttggcaaggtttagggagactcatttttcaacacgtctatactgac
atttcttgggcgagaatgggaataagttctatgagactattgttgcagag
taacagagtaatagagactaccacatggacacagtcaaagctgaaaagat
gcctttattgctagctagtggctgtatggagaacttctccagttcatgca
gccctgagccttgcagctttttatcttttatgaaaacaaacaaacaaaaa
acaaaaacaaaaaataaacaaagacagcaaccatatcttggttggcccac
ttcagttaataagaagcaggactacagtagcaagaaaaatcaaggttagt
agattttgagactttttatttggagctattctggaaaatggactagtctt
tctctcatttgacagctgtggccctctgtgtgggatttaagtcagaatgt
ctcatactcatgaaagacatcaaagtctagtctgagcacttgtgatatct
cagtcatttgagaaatacaagatttcagttaataataaagtctctagagt
ccttggccacatggaggtttccacatatgtggaattgttatattgtctag
aagagttccttcatgcttgagtgtagaacgaacgatgaacacgctttttg
cctttagag

gaattctcacctgaggaatactgaatgactgagtagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacagcggtcagatggctaagataaaaaattcaggtgacagga
gatgctggcaaggatgtggagaaaggaacactccttcattgttggtggga
atgcaagcttgtacaaccactctggaaatcattctggcagttcctcagaa
atttggccatagtactacccgaggatcccgtaatacctctcctgggcata
tatccagaagatgttccaaccagtaagaaggacacatcctcttctatgtt
tatagcagccttattcataatagccaggcgctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatttggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatgtacctggagggcatcatcctgagtcaggtaacccaatcacaaaaca
actcacatgatatgtactcattgataagtggatattagcccagaaactta
gaatacccaagatacaagatacaatttgcaaaacacatgaaactcaagaa
gaatgaagaccaaagtgtggacactttgcccctttttagatttgcaaaca
aaacacccatggaaggagttacagaagcaaagtttttagctgagacgaaa
ggatggaccatctagagactgccatatccggggatccatcccataatcag
cctccaaacgctgacaccatttcatacactagcaagattttgctgaaaga
acccagatatagccgtcttttgtgaggctatgccggggcctagcaaacac
agaagtggatgctcacagtcagcttttggatggatcacagtgctcccatg
gagagtagagaagtacccaagaagctaaagggatcttgcactctataagg
ttgaacaacatatgactaacagtgccccgagcctgtgtcctcagctgcat
tgtatcagagaatgctaagtcggcatcagtcgaaggagaaggctatgctt
tgccatatatcctcaatacggtatctgtgcccagaataggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_93044172_93045439
seq2: B6Ng01-154N01.b_49_1257 (reverse)

seq1  CTCTAAAGGC-AAAAGCTTGTTCTCATCTGTCTGTCCTCACCAACCCACA  49
      |||||||||| |||||| |||  ||||| ||  || ||     || | ||
seq2  CTCTAAAGGCAAAAAGCGTGT--TCATC-GTTCGTTCT-----ACACTCA  42

seq1  CAGCATGATGAAGGAGAACCTCCCTTCATGGACAAATATAACAATTCTCA  99
       |||   ||||||||      | |||| | ||| ||||||||||||| ||
seq2  -AGC---ATGAAGGA-----ACTCTTC-TAGAC-AATATAACAATTC-CA  80

seq1  CCATATAGTGAGAAACACCTCCCATGGTGGCCAAAAGGGGACTCTAGAGA  149
       ||||| ||| |||  |||| |||| ||||||||    ||||||||||||
seq2  -CATAT-GTG-GAA--ACCT-CCAT-GTGGCCAA----GGACTCTAGAGA  119

seq1  CTTTATTATACACCTTGAAATCCTTTGTATTTCTCAAAATGGAACTGGAG  199
      |||||||||  ||  |||||||  ||||||||||| |||||  ||| |||
seq2  CTTTATTATTAAC--TGAAATC--TTGTATTTCTC-AAATG--ACT-GAG  161

seq1  ATATTCAC-AGTGCTCCAAGACCTAAGACCTTTGAATGTCTTTCATGAGG  248
      ||| |||| |||||||  ||||   ||| ||||| ||||||||||||| |
seq2  ATA-TCACAAGTGCTC--AGAC--TAGA-CTTTG-ATGTCTTTCATGA-G  203

seq1  TATGAGGACCATTCTGACCTTAAATCCCAACACAGAGGGGCCCAACAGCT  298
      ||||||   |||||||| |||||||||| ||||||||||   | ||||||
seq2  TATGAG--ACATTCTGA-CTTAAATCCC-ACACAGAGGG---CCACAGCT  246

seq1  GTCAAAATGGAGAGAAAGACCTAGTCCCTTTTTCCAGAATAGCTCCCAAA  348
      ||||||   |||||||||| ||||| || ||||||||||||||| |||||
seq2  GTCAAA--TGAGAGAAAGA-CTAGT-CCATTTTCCAGAATAGCT-CCAAA  291

seq1  TAAAAAGTCTCAAAATCTACTAACCTTGATTTTTCTTGCTACTGTAGTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTCTCAAAATCTACTAACCTTGATTTTTCTTGCTACTGTAGTCC  341

seq1  TGCTTCTTATTAACTGAAGTGGGCCAACCAAGATATGGTTGCTTGTCTTT  448
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCTTCTTATTAACTGAAGTGGGCCAACCAAGATATGGTTGC-TGTCTTT  390

seq1  GTTTATTTTTTTGTTTTTGTTTTTTGTTTGTTTGTTTTCATAAAAGATAA  498
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTA-TTTTTTGTTTTTGTTTTTTGTTTGTTTGTTTTCATAAAAGATAA  439

seq1  AAAGCTGCAAGGCTCAGGGCTGCATGAACTGGAGAAGTTCTCCATACAGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCAAGGCTCAGGGCTGCATGAACTGGAGAAGTTCTCCATACAGC  489

seq1  CACTAGCTAGCAATAAAGGCATCTTTTCAGCTTTGACTGTGTCCATGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCTAGCAATAAAGGCATCTTTTCAGCTTTGACTGTGTCCATGTGG  539

seq1  TAGTCTCTATTACTCTGTTACTCTGCAACAATAGTCTCATAGAACTTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTATTACTCTGTTACTCTGCAACAATAGTCTCATAGAACTTATT  589

seq1  CCCATTCTCGCCCAAGAAATGTCAGTATAGACGTGTTGAAAAATGAGTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTCGCCCAAGAAATGTCAGTATAGACGTGTTGAAAAATGAGTCT  639

seq1  CCCTAAACCTTGCCAAATTAATCAGTAATTAGGCATGAGATAGAGAATAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACCTTGCCAAATTAATCAGTAATTAGGCATGAGATAGAGAATAC  689

seq1  TCACCAATCAGAAAGACAAATACGCCAGTGAATCTGACTCAAAGCACCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATCAGAAAGACAAATACGCCAGTGAATCTGACTCAAAGCACCTA  739

seq1  AGGACCTAAGCAGCACTCACAGAGCTGTCTGATAATGTCTGGTTTATGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTAAGCAGCACTCACAGAGCTGTCTGATAATGTCTGGTTTATGCC  789

seq1  TCCTCCTTGAGTGAATGGCAAAGCCAAAATGTAGCCTGTGGCCTGTTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTGAGTGAATGGCAAAGCCAAAATGTAGCCTGTGGCCTGTTTCA  839

seq1  AAGCTTAGACACTGCTCATTTGCATCAGTTCTGGGTAGGAGGACAATTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGACACTGCTCATTTGCATCAGTTCTGGGTAGGAGGACAATTTG  889

seq1  CTAGTTTATATCAGCAGAAATCGCATTTTCTAGCAGCAGTGTTGAATACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTATATCAGCAGAAATCGCATTTTCTAGCAGCAGTGTTGAATACA  939

seq1  TCAGCTTCTTGTTTCTGTATCCCTGAGTACACCAGGCATACTGCCTAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCTTGTTTCTGTATCCCTGAGTACACCAGGCATACTGCCTAGAA  989

seq1  GACAGGAGATGGTCAATAGATGAACATACTCAGATTGTTGAAAACTTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGATGGTCAATAGATGAACATACTCAGATTGTTGAAAACTTTTC  1039

seq1  CTATTCCTATGGAGGCAATTTCAGTGGATGTGTGAAGGGAGGCTTTGGTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTATGGAGGCAATTTCAGTGGATGTGTGAAGGGAGGCTTTGGTT  1089

seq1  TACACTCATACAGTTCAAGAAAGGGCAGAGGTGCCAGGAACTCTCTTCTA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCATACAGTTCAAGAAAGGGCAGAGGTGCCAGGAACTCTCTTCTA  1139

seq1  TTGAAGAGCTGAGCCTTCATGGCTATGAATGTTTTGGCATCCTTTCTGCT  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGCTGAGCCTTCATGGCTATGAATGTTTTGGCATCCTTTCTGCT  1189

seq1  GTGCTATGAGAATGGAATTC  1268
      ||||||||||||||||||||
seq2  GTGCTATGAGAATGGAATTC  1209


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