BAC Information

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BAC

Clone NameB6Ng01-154P08
Chromosome9 (Build37)
Map Location 78,260,123 - 78,261,263
singlet/doubletsinglet
Overlap geneLOC100042356
Upstream geneLrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408
Downstream geneLOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456, LOC436085, LOC235509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154P08.bB6Ng01-154P08.g
ACCDH949866DH949867
length1,1971,141
definitionDH949866|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P08, 5' end.DH949867|Mus musculus domesticus DNA, BAC clone: B6Ng01-154P08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattggcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcagtgcgcagactcattcattcccagagaggaacaaa
ggaaaatacaacaggcatttccggtctttgaaggagccgagggtgggcgt
gtccacgctccggtagaatacttacaaattaaagaaattgccgagtcggt
ccgtaaatacggaaccaatgctaattttaccttggtgcagttagacaggc
ttgccggcatggcactaactcctgccgactggcaaacggttgtaaaagcc
gctctccctagtatgggcaaatatatggaatggagagcgctttggcacga
agctgcacaagcgcaggcccgagcaaacgcagctgctttgactccagagc
agagagattggacttttgacttgttaacgggtcagggagcttattctgct
gatcaaacaaactaccattggggagcttatgcccagatttcttccacggc
tattagggcctggaaggcgctctctcgagcaggtgaaaccactggtcaat
taacaaagataatccagggacctcaggaatccttctcagattttgtggcc
agaatgacagaggcagcagagcgtatttttggagagtcagagcaagctgc
gcctctgatagaacagctaatctatgagcaagccacaaaggagtgccgag
cggccatagccccaagaaagaacaaaggcttacaagactggctcagggtc
tgtcgagagcttgggggactctcaccaatgcaggcttagcgccgccatcc
tccaatctcagaacgctcatgggcagaaataatcagaggacatgtttaac
tgcgaagcttggcattttagaagatgcagagctccagataacaggagact
tctcactcttgcttaagtgtgcagtttatcataagactgacggttacgcg
ctctatgtgagagatataagcaagtctaccccactggaagtcatcagctt
atggccaaaaccgtatcggccctcggttccagacctagaatttggac
gaattcctttggcttcattctcttaccagggatttaatagatatagaacc
aaaactataattagttcctgtcatttcttgcattgttcaaactgatgcct
cctggccagtatgcacgcagctatgctggtgaagtgcactcataaaggcc
tctcaggaagcaataggcagtagtcaccaccagagccatgacagaacgaa
cgacactagggtcaaattgtttagattgtcctaagtcaggctgtttaatt
aaaattgtaagaataaattatccagtatagttatatccaatgagaaaatg
tcatttcaaatgaactgttaattaaaaagtcatgttaaatgaacaaataa
gaacgagacagtggatttgtggtgtgtgtggcttattttcttgcttttgt
catttttatggtaactatgcctttctagcaaaaatttatagaaacttata
ccagcagcttatatatttaggtatgttaattgtgattaataaaccaaagt
ctataggagaaacgtttaatcatacacttcaccaaaaagtataaatatgc
cttgtctgtctttgacactcatcattaaaaatcttgtacttaaagaactt
tccatgcatctaagacaaacataaataatattactgtttcccttttaaag
agctagagaacaaagaaatgggcctggcatgttagttcttacgcccaccc
gggaattagcccttcaagtagaagctgaatgttctaaatattcatatggt
gatcttaaaaggtaagtcatttttgtacaagtgttatattcatcttcacg
attatagtaaactttatttaaatttaaaaatgtgtgtgtgtggttcttgg
ggtccaaaattcacagccttatgcatatatccaagtgttcaaccactgag
ctatgatcccactctacatattaattttcattggtgaacaacaacaaaaa
tcctacatcctaatgaatcaccatgtgatgcatctgagaggcagagtaga
tctcttagttcaaggttcatgcttgtcttagattgagttgcaaggcagtc
aggctacatagggaaacgtgtctcagaaaacaaataccacgtggtaaatc
actgcttgtgctttactagcacgaacgcgtcttgctgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_78260123_78261263
seq2: B6Ng01-154P08.g_68_1208

seq1  GAATTCCTTTGGCTTCATTCTCTTACCAGGGATTTAATAGATATAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGCTTCATTCTCTTACCAGGGATTTAATAGATATAGAACC  50

seq1  AAAACTATAATTAGTTCCTGTCATTTCTTGCATTGTTCAAACTGATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATAATTAGTTCCTGTCATTTCTTGCATTGTTCAAACTGATGCCT  100

seq1  CCTGGCCAGTATGCACGCAGCTATGCTGGTGAAGTGCACTCATAAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCAGTATGCACGCAGCTATGCTGGTGAAGTGCACTCATAAAGGCC  150

seq1  TCTCAGGAAGCAATAGGCAGTAGTCACCACCAGAGCCATGACAGAACGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGAAGCAATAGGCAGTAGTCACCACCAGAGCCATGACAGAACGAA  200

seq1  CGACACTAGGGTCAAATTGTTTAGATTGTCCTAAGTCAGGCTGTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACTAGGGTCAAATTGTTTAGATTGTCCTAAGTCAGGCTGTTTAATT  250

seq1  AAAATTGTAAGAATAAATTATCCAGTATAGTTATATCCAATGAGAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTAAGAATAAATTATCCAGTATAGTTATATCCAATGAGAAAATG  300

seq1  TCATTTCAAATGAACTGTTAATTAAAAAGTCATGTTAAATGAACAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAAATGAACTGTTAATTAAAAAGTCATGTTAAATGAACAAATAA  350

seq1  GAACGAGACAGTGGATTTGTGGTGTGTGTGGCTTATTTTCTTGCTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAGACAGTGGATTTGTGGTGTGTGTGGCTTATTTTCTTGCTTTTGT  400

seq1  CATTTTTATGGTAACTATGCCTTTCTAGCAAAAATTTATAGAAACTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATGGTAACTATGCCTTTCTAGCAAAAATTTATAGAAACTTATA  450

seq1  CCAGCAGCTTATATATTTAGGTATGTTAATTGTGATTAATAAACCAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTTATATATTTAGGTATGTTAATTGTGATTAATAAACCAAAGT  500

seq1  CTATAGGAGAAACGTTTAATCATACACTTCACCAAAAAGTATAAATATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGAGAAACGTTTAATCATACACTTCACCAAAAAGTATAAATATGC  550

seq1  CTTGTCTGTCTTTGACACTCATCATTAAAAATCTTGTACTTAAAGAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGTCTTTGACACTCATCATTAAAAATCTTGTACTTAAAGAACTT  600

seq1  TCCATGCATCTAAGACAAACATAAATAATATTACTGTTTCCCTTTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCATCTAAGACAAACATAAATAATATTACTGTTTCCCTTTTAAAG  650

seq1  AGCTAGAGAACAAAGAAATGGGCCTGGCATGTTAGTTCTTACGCCCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAACAAAGAAATGGGCCTGGCATGTTAGTTCTTACGCCCACCC  700

seq1  GGGAATTAGCCCTTCAAGTAGAAGCTGAATGTTCTAAATATTCATATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTAGCCCTTCAAGTAGAAGCTGAATGTTCTAAATATTCATATGGT  750

seq1  GATCTTAAAAGGTAAGTCATTTTTGTACAAGTGTTATATTCATCTTCACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAAAAGGTAAGTCATTTTTGTACAAGTGTTATATTCATCTTCACG  800

seq1  ATTATAGT-AACTTTATTTAAA-TTAAAAATGTGTGTGTGTGGTTCTT-G  847
      |||||||| ||||||||||||| ||||||||||||||||||||||||| |
seq2  ATTATAGTAAACTTTATTTAAATTTAAAAATGTGTGTGTGTGGTTCTTGG  850

seq1  GGTCC-AAATTCACAGCCTTATGCATATTATCCAAGTGTTCAACCACTGA  896
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTCCAAAATTCACAGCCTTATGCATA-TATCCAAGTGTTCAACCACTGA  899

seq1  GCTATGATCCCAACTCTACATATTAATTTTCAATTGGTGAACAACAACAA  946
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  GCTATGATCCC-ACTCTACATATTAATTTTC-ATTGGTGAACAACAACAA  947

seq1  AAATCCTACATCCTAATGAATCACCATGTGATGCACCTGAGAGGCAGAGG  996
      ||||||||||||||||||||||||||||||||||| |||||||||||| |
seq2  AAATCCTACATCCTAATGAATCACCATGTGATGCATCTGAGAGGCAGA-G  996

seq1  TAGATCTCTTAGTTCAAGG-TCAGCCTGGTCTACAGATTGAGTTGCAGGG  1045
      ||||||||||||||||||| |||  || ||||  ||||||||||||| ||
seq2  TAGATCTCTTAGTTCAAGGTTCATGCTTGTCT-TAGATTGAGTTGCAAGG  1045

seq1  CAGTCAGGGCTACATAGGGAAACGTGTCTCAGAAAACAAAATACACGTGT  1095
      |||||| |||||||||||||||||||||||||||||||||   |||||| 
seq2  CAGTCA-GGCTACATAGGGAAACGTGTCTCAGAAAACAAATACCACGTGG  1094

seq1  AAAATCACTGC-TGTGCTGTACTAGCACGACAGCGTCTTGCTGAGTT  1141
       |||||||||| |||||| |||||||||||  |||||||||||||||
seq2  TAAATCACTGCTTGTGCTTTACTAGCACGAACGCGTCTTGCTGAGTT  1141