BAC Information

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BAC

Clone NameB6Ng01-158P12
Chromosome9 (Build37)
Map Location 56,054,717 - 56,175,681
singlet/doubletdoublet
Overlap geneC230081A13Rik
Upstream geneUbe2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3
Downstream geneHmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158P12.bB6Ng01-158P12.g
ACCDH952773DH952774
length1,0641,082
definitionDH952773|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P12, 5' end.DH952774|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,054,717 - 56,055,794)(56,174,580 - 56,175,681)
sequence
gaattcatcacacttcttatactgggtggccgtgatgatctctggggcaa
ggcgggactggtctcggaggatctgggggtccaccaggtggctcttctgc
ttggcctgagagaagttactcacaatgagccttgtaggacaagctaaggt
ggggcaagggtctgcaggagaagggccctgggcagctcccccaggttggt
gctggacaagcagcaagttctccaggcgaagatcgcagtgcgtgacgtgg
tagggcttgaggtgctcaagcccagagcacagctgtaagagcagcagaca
cacttgcctctcatacaagtcagggctgttcccatgatgggccaaagaat
ctcgcacgaagtcggccacagtgagatggggaacctccctggtgatgacc
acaacgtggcttctttgtttcctgtttgtgactcgttggttctctttctg
ggatggctctgtttcagagcagggctcaggatttccccccaaagtttctg
ccttcccctcttcttcgctgtcttcagtgccatcctctgccttttcagga
gcatcaggatcctcccagggaagcagacgactagggacttcagcaaggaa
atggccacaatcctgctggatgttaaaatgcacaggcagactctgccgga
cagccaggctatggtaatactgctgagactccttagctttgctcttgcag
atctgaaagagagcaggaggcacacttagacttcccataagcagacacac
gaggtgcagaggatgattaactgcaaggtgactcattaggaacacagtaa
gtcttcagaaagggtctgggcagccagcctataagtgactaccgtttctc
atggacccacattcaagctacgctcagtgccttatgtgcaccacctctag
tctgcactcagtgccttatgtgcaccacctctagtctgcactcagtgcct
tatgcgcacacctcagctttcatacagctccttagactgtgggctctcta
cggagctgaaagtgatgtacgcatgctgagatgacttgactcctagctct
ccatcagttacaaa
gaattcacaaattaggaagttacagacataatgcacagaggcctgttagc
actattccctttattagttacaccttatttgactaatacagtattaaagg
caagaaaccaatattggtgcaaatgagtatatagttctgtggcattgcat
cacacctagattcctgtagccaacattgcattcctttgctatcatattat
ctttttatgtagcagtgccccttgcccttgtctgtaggggacactgggcg
ggacctccagtgcgaagctgaaagcaaaggcacttgtcatactgtaaata
aaccatcttctgtccctattgcagatcttagtaactcagcatggaacact
tttctttgttaaattgaagactttcaccatttcacttgaagttcccttat
ggcttctctttggtgtttctgaagtgttagcctcattattgttaatgaat
tctctttcatcctttgcttcagtactgatttcttttgttcagtctagcca
cagatttcttagtgttattaatacttgctcaaaaaaaaccaaaacaaaac
aaaacagtcttcagtttcatggatttttctctggttttcggctggctatt
ttatttatttgtttagtttttgttattatccacttattttgatttaattt
gctttcccccaccccatagaatcttaggcaattgcttttagtcttttacc
tccttaataaaagtagaagaaactataaatgtgctcagaacatcttagga
gaagtatctcgcagattttgtatttagatttccacttttatttgactcaa
attattttatattttcctatgattttctcatttactgtatagattatttt
agaagtatattgtttgatttctgaatgtttggggctttgtagaatctctc
tcttgctgttttctgacttgatttcatgtgtttccgttccttcggttata
cagccttattctgtgagcagcgtgtgttctgagaacgccttgtcatctaa
aggctgcgctgctgtgaccatgtgatgatgctctgtgtgagcatgctcat
gttcaatgatgctcactttctcgatcttcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_56054717_56055794
seq2: B6Ng01-158P12.b_50_1113

seq1  GAATTCATCACACTTCTTATACTGGGTGGCCGTGATGATCTCTGGGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACACTTCTTATACTGGGTGGCCGTGATGATCTCTGGGGCAA  50

seq1  GGCGGGACTGGTCTCGGAGGATCTGGGGGTCCACCAGGTGGCTCTTCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGACTGGTCTCGGAGGATCTGGGGGTCCACCAGGTGGCTCTTCTGC  100

seq1  TTGGCCTGAGAGAAGTTACTCACAATGAGCCTTGTAGGACAAGCTAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTGAGAGAAGTTACTCACAATGAGCCTTGTAGGACAAGCTAAGGT  150

seq1  GGGGCAAGGGTCTGCAGGAGAAGGGCCCTGGGCAGCTCCCCCAGGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGGGTCTGCAGGAGAAGGGCCCTGGGCAGCTCCCCCAGGTTGGT  200

seq1  GCTGGACAAGCAGCAAGTTCTCCAGGCGAAGATCGCAGTGCGTGACGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACAAGCAGCAAGTTCTCCAGGCGAAGATCGCAGTGCGTGACGTGG  250

seq1  TAGGGCTTGAGGTGCTCAAGCCCAGAGCACAGCTGTAAGAGCAGCAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTGAGGTGCTCAAGCCCAGAGCACAGCTGTAAGAGCAGCAGACA  300

seq1  CACTTGCCTCTCATACAAGTCAGGGCTGTTCCCATGATGGGCCAAAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCTCTCATACAAGTCAGGGCTGTTCCCATGATGGGCCAAAGAAT  350

seq1  CTCGCACGAAGTCGGCCACAGTGAGATGGGGAACCTCCCTGGTGATGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCACGAAGTCGGCCACAGTGAGATGGGGAACCTCCCTGGTGATGACC  400

seq1  ACAACGTGGCTTCTTTGTTTCCTGTTTGTGACTCGTTGGTTCTCTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGGCTTCTTTGTTTCCTGTTTGTGACTCGTTGGTTCTCTTTCTG  450

seq1  GGATGGCTCTGTTTCAGAGCAGGGCTCAGGATTTCCCCCCAAAGTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTCTGTTTCAGAGCAGGGCTCAGGATTTCCCCCCAAAGTTTCTG  500

seq1  CCTTCCCCTCTTCTTCGCTGTCTTCAGTGCCATCCTCTGCCTTTTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTCTTCTTCGCTGTCTTCAGTGCCATCCTCTGCCTTTTCAGGA  550

seq1  GCATCAGGATCCTCCCAGGGAAGCAGACGACTAGGGACTTCAGCAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGATCCTCCCAGGGAAGCAGACGACTAGGGACTTCAGCAAGGAA  600

seq1  ATGGCCACAATCCTGCTGGATGTTAAAATGCACAGGCAGACTCTGCCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACAATCCTGCTGGATGTTAAAATGCACAGGCAGACTCTGCCGGA  650

seq1  CAGCCAGGCTATGGTAATACTGCTGAGACTCCTTAGCTTTGCTCTTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCTATGGTAATACTGCTGAGACTCCTTAGCTTTGCTCTTGCAG  700

seq1  ATCTGAAAGAGAGCAGGAGGCACACTTAGACTTCCCATAAGCAGACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAGAGAGCAGGAGGCACACTTAGACTTCCCATAAGCAGACACAC  750

seq1  GAGGTGCAGAGGATGATTAACTGCAAGGTGACTCATTAGGAACACAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCAGAGGATGATTAACTGCAAGGTGACTCATTAGGAACACAGTAA  800

seq1  GTCTTCAGAAAGGGTCTGGGCAGCCAGCCTATAAGTGACTACCGTTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCAGAAAGGGTCTGGGCAGCCAGCCTATAAGTGACTACCGTTTCTC  850

seq1  ATGGACCCACATTCAAGGCTACGCTCAGTGCCTTATGTGCACCACCTCTA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGGACCCACATTCAA-GCTACGCTCAGTGCCTTATGTGCACCACCTCTA  899

seq1  GTCTGCACTCAGTGCCTTATGTGCACCACCTCTAGTCTGCACTCAGTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACTCAGTGCCTTATGTGCACCACCTCTAGTCTGCACTCAGTGCC  949

seq1  TTATGCGCACCACCTCCAGCTTTCATACAAGCCCCTTAGACTGTGGGCTC  1000
      ||||||||| ||||| |||||||||||| ||| |||||||||||||||||
seq2  TTATGCGCA-CACCT-CAGCTTTCATAC-AGCTCCTTAGACTGTGGGCTC  996

seq1  CAACTAACGGAGCTGGAAAAGTGGATGTACGCATGCTGAAGAATGGAACT  1050
         || |||||||||  ||||| ||||||||||||||||   |||  |||
seq2  --TCT-ACGGAGCTG--AAAGT-GATGTACGCATGCTGA--GATG--ACT  1036

seq1  TGACCCCTAAGCTCT-CATCAGTTACAAA  1078
      |||| ||| |||||| |||||||||||||
seq2  TGACTCCT-AGCTCTCCATCAGTTACAAA  1064

seq1: chr9_56174580_56175681
seq2: B6Ng01-158P12.g_67_1148 (reverse)

seq1  GAGGGAGATCTGAGAAAGCTGAGCATCACTGAACACTGAGCATCGCTCAA  50
      |||| ||||| ||||||| ||||||||| |||||| ||||||| |||| |
seq2  GAGGAAGATC-GAGAAAG-TGAGCATCATTGAACA-TGAGCAT-GCTC-A  45

seq1  CACAGAGCATCACTCAACACTGGTCCACAGCAGCGCAGCGCCTTTAGGAT  100
      |||||||||||| || ||| |||| ||||||||||||  ||||||| |||
seq2  CACAGAGCATCA-TC-ACA-TGGT-CACAGCAGCGCA--GCCTTTA-GAT  88

seq1  GACCAAGGCGTTTCTCAGAACACACCGCTGCCTCAACAAGAATAAGGCTG  150
      || ||||||| ||||||||||||| ||||| ||||   ||||||||||||
seq2  GA-CAAGGCG-TTCTCAGAACACA-CGCTG-CTCA--CAGAATAAGGCTG  132

seq1  TATAAACCGAAGGAACGGAAACCACATGAAATCAAGTCAGAAAACAGCAA  200
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAT-AACCGAAGGAACGGAAA-CACATGAAATCAAGTCAGAAAACAGCAA  180

seq1  GAGAGAGATTCTACAAAGCCCCAAACATTCAGAAATCAAACAATATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATTCTACAAAGCCCCAAACATTCAGAAATCAAACAATATACTT  230

seq1  CTAAAATAATCTATACAGTAAATGAGAAAATCATAGGAAAATATAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAATCTATACAGTAAATGAGAAAATCATAGGAAAATATAAAATA  280

seq1  ATTTGAGTCAAATAAAAGTGGAAATCTAAATACAAAATCTGCGAGATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTCAAATAAAAGTGGAAATCTAAATACAAAATCTGCGAGATACT  330

seq1  TCTCCTAAGATGTTCTGAGCACATTTATAGTTTCTTCTACTTTTATTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGATGTTCTGAGCACATTTATAGTTTCTTCTACTTTTATTAAG  380

seq1  GAGGTAAAAGACTAAAAGCAATTGCCTAAGATTCTATGGGGTGGGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAAAGACTAAAAGCAATTGCCTAAGATTCTATGGGGTGGGGGAAA  430

seq1  GCAAATTAAATCAAAATAAGTGGATAATAACAAAAACTAAACAAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTAAATCAAAATAAGTGGATAATAACAAAAACTAAACAAATAAAT  480

seq1  AAAATAGCCAGCCGAAAACCAGAGAAAAATCCATGAAACTGAAGACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCCAGCCGAAAACCAGAGAAAAATCCATGAAACTGAAGACTGTT  530

seq1  TTGTTTTGTTTTGGTTTTTTTTGAGCAAGTATTAATAACACTAAGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGGTTTTTTTTGAGCAAGTATTAATAACACTAAGAAATC  580

seq1  TGTGGCTAGACTGAACAAAAGAAATCAGTACTGAAGCAAAGGATGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTAGACTGAACAAAAGAAATCAGTACTGAAGCAAAGGATGAAAGA  630

seq1  GAATTCATTAACAATAATGAGGCTAACACTTCAGAAACACCAAAGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACAATAATGAGGCTAACACTTCAGAAACACCAAAGAGAAG  680

seq1  CCATAAGGGAACTTCAAGTGAAATGGTGAAAGTCTTCAATTTAACAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGGAACTTCAAGTGAAATGGTGAAAGTCTTCAATTTAACAAAGA  730

seq1  AAAGTGTTCCATGCTGAGTTACTAAGATCTGCAATAGGGACAGAAGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTCCATGCTGAGTTACTAAGATCTGCAATAGGGACAGAAGATGG  780

seq1  TTTATTTACAGTATGACAAGTGCCTTTGCTTTCAGCTTCGCACTGGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACAGTATGACAAGTGCCTTTGCTTTCAGCTTCGCACTGGAGGT  830

seq1  CCCGCCCAGTGTCCCCTACAGACAAGGGCAAGGGGCACTGCTACATAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCAGTGTCCCCTACAGACAAGGGCAAGGGGCACTGCTACATAAAA  880

seq1  AGATAATATGATAGCAAAGGAATGCAATGTTGGCTACAGGAATCTAGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATATGATAGCAAAGGAATGCAATGTTGGCTACAGGAATCTAGGTG  930

seq1  TGATGCAATGCCACAGAACTATATACTCATTTGCACCAATATTGGTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAATGCCACAGAACTATATACTCATTTGCACCAATATTGGTTTCT  980

seq1  TGCCTTTAATACTGTATTAGTCAAATAAGGTGTAACTAATAAAGGGAATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATACTGTATTAGTCAAATAAGGTGTAACTAATAAAGGGAATA  1030

seq1  GTGCTAACAGGCCTCTGTGCATTATGTCTGTAACTTCCTAATTTGTGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAACAGGCCTCTGTGCATTATGTCTGTAACTTCCTAATTTGTGAAT  1080

seq1  TC  1102
      ||
seq2  TC  1082