BAC Information

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BAC

Clone NameB6Ng01-161M24
Chromosome9 (Build37)
Map Location 37,281,941 - 37,417,908
singlet/doubletdoublet
Overlap geneBC024479, Esam1, Vsig2, Nrgn, Spa17
Upstream geneLOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3
Downstream geneSiae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M24.bB6Ng01-161M24.g
ACCDH954823DH954824
length1,1061,102
definitionDH954823|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M24, 5' end.DH954824|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,281,941 - 37,283,067)(37,416,791 - 37,417,908)
sequence
gaattcctgcaaattctgcctgtaaaagggataatttctccttctgttca
tctgttacagtgatgcttttgtacactgtgtgaagatatgtctctgtcct
ttcttgcctgcctaaggcacttttctgactggttaaaataaaaagcctat
ggcctatagcaaaaggcatggtagtaggtgacatccagcagagagatagg
aactttgggagggagtcaggtgttggatgtatgaaactgaggtgaggtaa
ccagtcatgtggcagaacacagagtagtataaaggtgttaatataagtta
actctagttggggaccaagcctaaactaaggccaaaaacattgtaaatat
atagagctaggagataccaaatggaatttacacattctgccctaccacct
ccttacttaaaaccctgaaacaggcgatgagatagctctgaagtcaagta
tcctcttacctgaatatgcatgctacggtatgccgcgcccccccaccccc
acatctatataccccacaaccacatagcacacacacacacacacacacac
acacacatacctacacacatagataccacacacatacacacacatcccca
tactatacgcacatacagtaaacaagtccaaatactgtttgagacattat
taaagatctctctcacgctgccaaaggccagccacacgaggactaccaag
catgagttgccacttctcctgccgcagcaactgcttcctcattctttccc
agcactggcagctgttgttccaccattcttccagccttccctcacagcct
ccttggtgggtatccagttcttagtaccagctggtccgaaggcagaattc
caacacggcagtagaagacacaagcctgcagaggttaggctccagcacaa
catggcttcttcacattttatggatacaccgatcacagggctatctcaga
tccagggtgtaaggaaagtgactcggatgtaatgaaagtataatattgga
cgttttacgatggtagcaatgctctttgcacacgtgtacagactgtggtg
agtctgaggtgaacctactggagtcaaacgattgcagtttctgaggcatt
ccatgt
gaattcccttgccaccgtttttcatgggtggctagtagtcttcatttttg
tgacaggaaacctgtgactatacagtgtaagtggtagctcaagtcattag
gagaaaatggacttcttaaatagtattgagatcaaaataagaaaacaaaa
ttgtatcaatactttatatcatagccccagataaataataagttgattcc
agatttaaatactaagaaagaaaccatataaatgctgggaggtacttcat
cccttaagaaaaacatcttgcttgccaagttgcttcaaactcaaaggcaa
cacggttgaaggaacagattgatggaactgacagcataagaagtcagctt
gtgtgtaacaaagcagcatgaagaaaacaaaataacaaactgagaaaaat
gcttgcagttcacgtcccagcagcccagtgagttaataagcctaataaat
agcttgtaaaaatcatgtgttaaacgcctttatgtcaagagataacggtt
cacacaaaaattaacacagatagctcttaacatgaaaagctaccccaact
atcccataataacaattccaatcaaaattgggcatatagagatagcttcg
gggataagagcacttctgctcttccagaagacccaagctcagatagcagc
agccacctgggcagctttacaactgcctgtaactacagttccaggggatc
tgatttcttgtttccattggcacacacacaaatacagtaatgaaaaacag
aagaaactacactcaactaccaacaactactatgtattctcagcaagcca
aaagtttatcagtatgatttgtagattaggctaagacaaataagccctca
cactcattcctactggaggtagaacatgcatccacaggaaaggaattctg
tagtatctgtcaaacttacttaactgtaagccagagttcccctctacaca
ttccattatactgtcatttataaacacccaaatatacatataggtgattt
ttttttttatgttgcactggcccaacaacaaagcaaatcagtctttaggc
catactctaaatgtaaggcaattctacttcctctttaaactggatctgtc
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37281941_37283067
seq2: B6Ng01-161M24.b_44_1149

seq1  GAATTCCTGCAAATTCTGCCTGTAAAAGGGATAATTTCTCCTTCTGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAAATTCTGCCTGTAAAAGGGATAATTTCTCCTTCTGTTCA  50

seq1  TCTGTTACAGTGATGCTTTTGTACACTGTGTGAAGATATGTCTCTGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTACAGTGATGCTTTTGTACACTGTGTGAAGATATGTCTCTGTCCT  100

seq1  TTCTTGCCTGCCTAAGGCACTTTTCTGACTGGTTAAAATAAAAAGCCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCTGCCTAAGGCACTTTTCTGACTGGTTAAAATAAAAAGCCTAT  150

seq1  GGCCTATAGCAAAAGGCATGGTAGTAGGTGACATCCAGCAGAGAGATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATAGCAAAAGGCATGGTAGTAGGTGACATCCAGCAGAGAGATAGG  200

seq1  AACTTTGGGAGGGAGTCAGGTGTTGGATGTATGAAACTGAGGTGAGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGGAGGGAGTCAGGTGTTGGATGTATGAAACTGAGGTGAGGTAA  250

seq1  CCAGTCATGTGGCAGAACACAGAGTAGTATAAAGGTGTTAATATAAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCATGTGGCAGAACACAGAGTAGTATAAAGGTGTTAATATAAGTTA  300

seq1  ACTCTAGTTGGGGACCAAGCCTAAACTAAGGCCAAAAACATTGTAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTTGGGGACCAAGCCTAAACTAAGGCCAAAAACATTGTAAATAT  350

seq1  ATAGAGCTAGGAGATACCAAATGGAATTTACACATTCTGCCCTACCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTAGGAGATACCAAATGGAATTTACACATTCTGCCCTACCACCT  400

seq1  CCTTACTTAAAACCCTGAAACAGGCGATGAGATAGCTCTGAAGTCAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTAAAACCCTGAAACAGGCGATGAGATAGCTCTGAAGTCAAGTA  450

seq1  TCCTCTTACCTGAATATGCATGCTACGGTATGCCGCGCCCCCCCACCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTACCTGAATATGCATGCTACGGTATGCCGCGCCCCCCCACCCCC  500

seq1  ACATCTATATACCCCACAACCACATAGCACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATATACCCCACAACCACATAGCACACACACACACACACACACAC  550

seq1  ACACACATACCTACACACATAGATACCACACACATACACACACATCCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACCTACACACATAGATACCACACACATACACACACATCCCCA  600

seq1  TACTATACGCACATACAGTAAACAAGTCCAAATACTGTTTGAGACATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATACGCACATACAGTAAACAAGTCCAAATACTGTTTGAGACATTAT  650

seq1  TAAAGATCTCTCTCACGCTGCCAAAGGCCAGCCACACGAGGACTACCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCTCTCTCACGCTGCCAAAGGCCAGCCACACGAGGACTACCAAG  700

seq1  CATGAGTTGCCACTTCTCCTGCCGCAGCAACTGCTTCCTCATTCTTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTGCCACTTCTCCTGCCGCAGCAACTGCTTCCTCATTCTTTCCC  750

seq1  AGCACTGGCAGCTGTTGTTCCACCATTCTTCCAGCCTTCCCTCACAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCAGCTGTTGTTCCACCATTCTTCCAGCCTTCCCTCACAGCCT  800

seq1  CCTTGGTGGGTATCCAGTTCTTAGTACCAGCTGGTCCGAAGGCAGAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTGGGTATCCAGTTCTTAGTACCAGCTGGTCCGAAGGCAGAATTC  850

seq1  CAACACGGCAGTAGAAGACACAAGCCTGCAGAGGTTAGGCTCCAGCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGGCAGTAGAAGACACAAGCCTGCAGAGGTTAGGCTCCAGCACAA  900

seq1  CATGGCTTCTTCCACATTTTATGGATACAACCGAATCACAGGGCTATCTC  950
      ||||||||||| |||||||||||||||| |||| ||||||||||||||||
seq2  CATGGCTTCTT-CACATTTTATGGATAC-ACCG-ATCACAGGGCTATCTC  947

seq1  AGATCCAGGGTGTAAGGAAAGTGACTCGGATGTTAATGAAAGTTATTAAA  1000
      |||||||||||||||||||||||||||||||| ||||||||| |||  ||
seq2  AGATCCAGGGTGTAAGGAAAGTGACTCGGATG-TAATGAAAG-TAT--AA  993

seq1  TATTGGGACGGTTTTACGAATTGTAGCAAATGGCTCTTTGCCAACACGTG  1050
      |||| |||| |||||||| || |||||||   |||||||||  |||||||
seq2  TATT-GGAC-GTTTTACG-ATGGTAGCAA--TGCTCTTTGC--ACACGTG  1036

seq1  TACAGACCTGTGGTGAGTTCCTGAAGGTGAACTTACT-GAGTCAAACGTA  1099
      |||||| |||||||||||  ||| |||||||| |||| |||||||||| |
seq2  TACAGA-CTGTGGTGAGT--CTG-AGGTGAACCTACTGGAGTCAAACG-A  1081

seq1  TTGGCAGTTTTCTGAGGCATTCCCATGT  1127
      || |||| ||||||||||||| ||||||
seq2  TT-GCAG-TTTCTGAGGCATT-CCATGT  1106

seq1: chr9_37416791_37417908
seq2: B6Ng01-161M24.g_69_1170 (reverse)

seq1  CAGACAGATCCAGTTAAAAGAGGAAAGGTAGAATTTGGCTTACAATTTTA  50
      ||||||||||||||| |||||||||  |||||| ||| ||||||  ||||
seq2  CAGACAGATCCAGTTTAAAGAGGAA--GTAGAA-TTGCCTTACA--TTTA  45

seq1  GAGGTATGGGCTAAAGACTGATTTGCTTTGTTGTTTGGGCCAGTGCAAAC  100
      || |||||| ||||||||||||||||||||||| |||||||||||| |||
seq2  GA-GTATGGCCTAAAGACTGATTTGCTTTGTTG-TTGGGCCAGTGC-AAC  92

seq1  ATTAAAAAAAAAAATCACCTAATATGTATATTTGGGTTGTTTTAATAAAT  150
      | |||||||||||||||||| ||||||||||||||| |||||  ||||||
seq2  A-TAAAAAAAAAAATCACCT-ATATGTATATTTGGG-TGTTT--ATAAAT  137

seq1  GACAGTATAATGGAATGTGTAGAGGGGGAACTTCTTGGCTTACAGTTAAG  200
      ||||||||||||||||||||||| ||||||||   |||||||||||||||
seq2  GACAGTATAATGGAATGTGTAGA-GGGGAACT--CTGGCTTACAGTTAAG  184

seq1  TAAGTTTGACAGATACTACAGAATTCCTTTCCTGTGGATGCATGTTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGACAGATACTACAGAATTCCTTTCCTGTGGATGCATGTTCTAC  234

seq1  CTCCAGTAGGAATGAGTGTGAGGGCTTATTTGTCTTAGCCTAATCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTAGGAATGAGTGTGAGGGCTTATTTGTCTTAGCCTAATCTACAA  284

seq1  ATCATACTGATAAACTTTTGGCTTGCTGAGAATACATAGTAGTTGTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTGATAAACTTTTGGCTTGCTGAGAATACATAGTAGTTGTTGGT  334

seq1  AGTTGAGTGTAGTTTCTTCTGTTTTTCATTACTGTATTTGTGTGTGTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGTGTAGTTTCTTCTGTTTTTCATTACTGTATTTGTGTGTGTGCC  384

seq1  AATGGAAACAAGAAATCAGATCCCCTGGAACTGTAGTTACAGGCAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAACAAGAAATCAGATCCCCTGGAACTGTAGTTACAGGCAGTTGT  434

seq1  AAAGCTGCCCAGGTGGCTGCTGCTATCTGAGCTTGGGTCTTCTGGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCCCAGGTGGCTGCTGCTATCTGAGCTTGGGTCTTCTGGAAGAG  484

seq1  CAGAAGTGCTCTTATCCCCGAAGCTATCTCTATATGCCCAATTTTGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGCTCTTATCCCCGAAGCTATCTCTATATGCCCAATTTTGATTG  534

seq1  GAATTGTTATTATGGGATAGTTGGGGTAGCTTTTCATGTTAAGAGCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTATTATGGGATAGTTGGGGTAGCTTTTCATGTTAAGAGCTATC  584

seq1  TGTGTTAATTTTTGTGTGAACCGTTATCTCTTGACATAAAGGCGTTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAATTTTTGTGTGAACCGTTATCTCTTGACATAAAGGCGTTTAAC  634

seq1  ACATGATTTTTACAAGCTATTTATTAGGCTTATTAACTCACTGGGCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTTTTACAAGCTATTTATTAGGCTTATTAACTCACTGGGCTGCT  684

seq1  GGGACGTGAACTGCAAGCATTTTTCTCAGTTTGTTATTTTGTTTTCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGTGAACTGCAAGCATTTTTCTCAGTTTGTTATTTTGTTTTCTTCA  734

seq1  TGCTGCTTTGTTACACACAAGCTGACTTCTTATGCTGTCAGTTCCATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTTGTTACACACAAGCTGACTTCTTATGCTGTCAGTTCCATCAA  784

seq1  TCTGTTCCTTCAACCGTGTTGCCTTTGAGTTTGAAGCAACTTGGCAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTTCAACCGTGTTGCCTTTGAGTTTGAAGCAACTTGGCAAGCA  834

seq1  AGATGTTTTTCTTAAGGGATGAAGTACCTCCCAGCATTTATATGGTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTTTCTTAAGGGATGAAGTACCTCCCAGCATTTATATGGTTTCT  884

seq1  TTCTTAGTATTTAAATCTGGAATCAACTTATTATTTATCTGGGGCTATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTATTTAAATCTGGAATCAACTTATTATTTATCTGGGGCTATGA  934

seq1  TATAAAGTATTGATACAATTTTGTTTTCTTATTTTGATCTCAATACTATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTATTGATACAATTTTGTTTTCTTATTTTGATCTCAATACTATT  984

seq1  TAAGAAGTCCATTTTCTCCTAATGACTTGAGCTACCACTTACACTGTATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTCCATTTTCTCCTAATGACTTGAGCTACCACTTACACTGTATA  1034

seq1  GTCACAGGTTTCCTGTCACAAAAATGAAGACTACTAGCCACCCATGAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGTTTCCTGTCACAAAAATGAAGACTACTAGCCACCCATGAAAA  1084

seq1  ACGGTGGCAAGGGAATTC  1118
      ||||||||||||||||||
seq2  ACGGTGGCAAGGGAATTC  1102