BAC Information

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BAC

Clone NameB6Ng01-162F17
Chromosome9 (Build37)
Map Location 98,970,874 - 98,972,124
singlet/doubletsinglet
Overlap genePik3cb
Upstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123
Downstream geneLOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F17.bB6Ng01-162F17.g
ACCDH955214DH955215
length1,2221,155
definitionDH955214|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F17, 5' end.DH955215|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgaaaatgtgctaaaggttgtgtcacctaagcaagtttagcga
actgtgtcagtaagcctttaggcacatgagaaggacttcattgctcttga
tcatcaagagaagtctaactggagaacacacacttttactgttttctatc
tctgcggcgagctcatctgccggtcaggacaacataagcactaaagcttg
ctataaagaaggcactgttgcttagaaggtttcctctaacacctacaaaa
ataaatgtttaaaacacgaatactctcattaaaattgcatatataataca
tagttaatacagcatataattatataatatacttacataatgtaatatac
tgtatatatgttatatataatatacatatgcatatacacacgagaatttc
atatctatagcaaaatactctaagtcaatttgagtataaataataggtag
gcatggtggcatacacttttaatcccaaaattctggatgcagaggcagat
gaatctctgtgagttaaaggccagcctgaccaaaatagtgagtttcaagt
cagccacatagagagatcttgtctcaaaacaaagcaaaacaacataaaag
aataaataaccaagacagtttttagttttttactgaaatatgacaatagt
gagtcagagaaacactgactcgtgcaccagtaagacactagctgcttgcc
agaactaagcactgccgttaagaatcttagtcagtgttggtggcacatac
ctttaatcccagcagccgggtctcttgagttggaagccagcctggtctac
agggttctaggacagtcagagctacacagagaaaccctgtattggaaact
aaaaaaaaaaaacaaaaaacaaaaacaaaaaacaaatcttaccaggaaac
gaagaccagctatgcaatatgacgtctccagacctcagctgtcctttgaa
gtcaaaaccatggtattacccatgcgacaggatatgctgttgaaagagca
ctgcataaataacccagacggactctaggaatcacagaacccgtgcccat
gtttcatgtagtactagacatttctgatgtctaggtaatttcaaaattta
tgccattgaaacaatatagtagccatttcagattcttcatactttaagaa
accgttgacgtctaattatagccataaacggatgcaccgacgaaacattc
cgcaactggacggagaggttct
gaattccaatggatcaggctttaagaccaacaattgatcaatggaacctc
atgaaactgaaaaccttctgtaaggcggcaaaggacatagtcgatagaac
aaatcggcaacttacagattgggaaaaacaaacaaacaaacttcactaat
accacatctgatagagtgctaatatccaaacaaataactcaagaaattaa
ctaccaaaaacccaaacaacccaatttacaacagaggaatctcaaatgac
tgggaaacactttaagtaatggtcaaagtccttagtgatcaggaaaatac
aaatcaaaatgaccctgagattccacctaacaccaatcagaacagcgaag
attaaaaactcaggtgacaacatccgttggcaaggctatggaaaaaaagg
agcattcctccaatactggtgggattgcaaagtagtggaaccacctggaa
atcagtctataggttcctcagaaaactggaactatatgaaacccagctat
gccattcttagtcatacacccaaaagatagcccaccatgccacaagggca
cgtgttccactgtgttcatagtggccttatttgtgataacctgaagttgg
aaacaacccagatgtcccacaacagaagaatggattcagaaatctgtttc
atttacacagtggaatactatttttcttaatgcttgcccttagacatgca
ttttgtctttcagggttttatcatctcctcttgccgaggtatgatttcat
tttgttttcagagatatttgcattctgtctcatttattgaagctccaatg
gtagccactcaattttccaggcatttcattcttgtttatctcatttcact
atccttgctcttttttttttttttttttgagtccttcactttcatctcag
tagtagaaagcttctcttctactgctccacagggtttgcccactccactg
tggccagtcagcatttccctcccacaggtctttagcacattctttgcaca
tttcatacagataaacctgtgttgtaaaaaaaatgttactagtcttgaga
atggttgatgatctcagaaccgaggcccttttatctatccataatctgaa
gtcggtatggattgattcctatacacacttgtattttgtatgcggtagat
gagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_98970874_98972124
seq2: B6Ng01-162F17.b_46_1267

seq1  GAATTCATGAAAATGTGCTAAAGGTTGTGTCACCTAAGCAAGTTTAGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAAATGTGCTAAAGGTTGTGTCACCTAAGCAAGTTTAGCGA  50

seq1  ACTGTGTCAGTAAGCCTTTAGGCACATGAGAAGGACTTCATTGCTCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCAGTAAGCCTTTAGGCACATGAGAAGGACTTCATTGCTCTTGA  100

seq1  TCATCAAGAGAAGTCTAACTGGAGAACACACACTTTTACTGTTTTCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGAGAAGTCTAACTGGAGAACACACACTTTTACTGTTTTCTATC  150

seq1  TCTGCGGCGAGCTCATCTGCCGGTCAGGACAACATAAGCACTAAAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGGCGAGCTCATCTGCCGGTCAGGACAACATAAGCACTAAAGCTTG  200

seq1  CTATAAAGAAGGCACTGTTGCTTAGAAGGTTTCCTCTAACACCTACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGAAGGCACTGTTGCTTAGAAGGTTTCCTCTAACACCTACAAAA  250

seq1  ATAAATGTTTAAAACACGAATACTCTCATTAAAATTGCATATATAATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTTTAAAACACGAATACTCTCATTAAAATTGCATATATAATACA  300

seq1  TAGTTAATACAGCATATAATTATATAATATACTTACATAATGTAATATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATACAGCATATAATTATATAATATACTTACATAATGTAATATAC  350

seq1  TGTATATATGTTATATATAATATACATATGCATATACACACGAGAATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATGTTATATATAATATACATATGCATATACACACGAGAATTTC  400

seq1  ATATCTATAGCAAAATACTCTAAGTCAATTTGAGTATAAATAATAGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATAGCAAAATACTCTAAGTCAATTTGAGTATAAATAATAGGTAG  450

seq1  GCATGGTGGCATACACTTTTAATCCCAAAATTCTGGATGCAGAGGCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGCATACACTTTTAATCCCAAAATTCTGGATGCAGAGGCAGAT  500

seq1  GAATCTCTGTGAGTTAAAGGCCAGCCTGACCAAAATAGTGAGTTTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTGTGAGTTAAAGGCCAGCCTGACCAAAATAGTGAGTTTCAAGT  550

seq1  CAGCCACATAGAGAGATCTTGTCTCAAAACAAAGCAAAACAACATAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATAGAGAGATCTTGTCTCAAAACAAAGCAAAACAACATAAAAG  600

seq1  AATAAATAACCAAGACAGTTTTTAGTTTTTTACTGAAATATGACAATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAACCAAGACAGTTTTTAGTTTTTTACTGAAATATGACAATAGT  650

seq1  GAGTCAGAGAAACACTGACTCGTGCACCAGTAAGACACTAGCTGCTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGAAACACTGACTCGTGCACCAGTAAGACACTAGCTGCTTGCC  700

seq1  AGAACTAAGCACTGCCGTTAAGAATCTTAGCCAGTGTTGGTGGCACATAC  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAACTAAGCACTGCCGTTAAGAATCTTAGTCAGTGTTGGTGGCACATAC  750

seq1  CTTTAATCCCAGCAGCCGGGTCTCTTGAGTTGGAAGCCAGCCTGGTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCAGCCGGGTCTCTTGAGTTGGAAGCCAGCCTGGTCTAC  800

seq1  AGGGTTCTAGGACAGTCAGAGCTACACAGAGAAACCCTGTATTGGAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTAGGACAGTCAGAGCTACACAGAGAAACCCTGTATTGGAAACT  850

seq1  AAAAAAAAAAAACAAAAAACAAAAAACAAAAAACAAATCTTACCAGGAAA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACAAAAAAC-AAAAACAAAAAACAAATCTTACCAGGAAA  899

seq1  CGAAGACCAGCTATGCAATATGACGTCTCCAGACCTCAGCTGTCCTTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGACCAGCTATGCAATATGACGTCTCCAGACCTCAGCTGTCCTTTGA  949

seq1  AGTCAAAAACCATGGTATTTACCCATGCGACAGGATAATGCTGTTGAAAA  1000
      |||| |||||||||||| |||||||||||||||||| ||||||||| |||
seq2  AGTC-AAAACCATGGTA-TTACCCATGCGACAGGAT-ATGCTGTTG-AAA  995

seq1  GAGCACTGCATAAATAAACCCAGAACGGACTCCAAGGAATCACAGAACCC  1050
      ||||||||||||||| ||||||| ||||||| | ||||||||||||||||
seq2  GAGCACTGCATAAAT-AACCCAG-ACGGACT-CTAGGAATCACAGAACCC  1042

seq1  GTGCCCCATGTTTCAATGTAAGTACTAGACATTTCTGATGTTCTAGGTAA  1100
      ||| |||||||||| |||| |||||||||||||||||||| |||||||||
seq2  GTG-CCCATGTTTC-ATGT-AGTACTAGACATTTCTGATG-TCTAGGTAA  1088

seq1  TTTCCAAAAATTTATGCAAATTGAAAACAATATAGTAGCCATTTCAGTAT  1150
      ||||  |||||||||||  |||| |||||||||||||||||||||||  |
seq2  TTTC--AAAATTTATGC-CATTG-AAACAATATAGTAGCCATTTCAGATT  1134

seq1  CTTCATAACTTTTAAGAACAATTTGACAGTCTAATTAATATACCACAATA  1200
      |||||||   ||||||||    ||||| |||||||   ||||   | |||
seq2  CTTCATA--CTTTAAGAAACCGTTGAC-GTCTAAT---TATA--GCCATA  1176

seq1  AAACAGTATGCACACGGACAGAAACATTTCTGCAACT-GAGGGAGAGGTT  1249
      ||   | |||  ||| ||| |||||| ||| |||||| || |||||||||
seq2  AA--CGGATG--CACCGAC-GAAACA-TTCCGCAACTGGACGGAGAGGTT  1220

seq1  CT  1251
      ||
seq2  CT  1222