BAC Information

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BAC

Clone NameB6Ng01-162K02
Chromosome9 (Build37)
Map Location 106,449,101 - 106,581,522
singlet/doubletdoublet
Overlap geneIqcf3, Iqcf4, LOC100041096, Grm2, Tex264
Upstream geneEG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5
Downstream geneRad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162K02.bB6Ng01-162K02.g
ACCDH955421DH955422
length7571,081
definitionDH955421|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K02, 5' end.DH955422|Mus musculus domesticus DNA, BAC clone: B6Ng01-162K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,580,770 - 106,581,522)(106,449,101 - 106,450,132)
sequence
gaattcctctgggaaccttctgtgctggagggaaatgaaggactgggagg
accctgcacacctcacctcttcccaactactgtggcccgcgcacagaggc
ccttgcagctaggtgctgtcagcattcctgtacgtctatctgccgctcct
actcctgtcccacctcccacagctactcctctgctgtttgctacgtctgc
accctgcccagctaccaccgtgggaggtgagggtgtggtagctagttgtg
tttacctggcctgggcaagagggggtctgtcgctcacagttactaccaag
caccgtgcttttcccaggcatggagcgatggaggaacgggtggcattcag
agcttacaaaatactctgcctctctctttccatcagtccactgagaatga
aggcctagaatgagcaagtctaggcctgagagttttaagagttctgcacc
cggtcctcactactcagtggggtttggggtagcttctcttacggcatgta
ggtcagggggaaccgggaaggacaatagggtggtttcccagggctgacct
cctcaacagagaagtggaaatacgagctgggttgctgtttcctgaggccc
aggctgtccctactctgattaacctgaggatgttttctgccaggtgcagc
cagactattgctctgtggtaagttaaacgtgggagagatctcgcaaggtg
agctcctctgccccagcaagagatgcccttgggaggtggagtgaggggga
gggactc
gaattcctaaacttatacaagtgatgttgaaacccgctataagaaaaact
ataattcagactccctaatccttcccgtgtcacaagctatttgcacaaag
acagaaagcaggcatgaaacagatttacaattaaggaaaacattccttta
ggttgtacaaccattatctgataactaaaagctgcaggctgggaacgaac
agtttactgtaggtgcaaggacagaagatctctttatctagacaaaactt
caatgctaatgagacactaggcagatgatttgcctctgacatcctgtgtt
aacttagacctaagaattatagttctaaacttttactaaacctgtggagc
tagtggcagacaatgtttagttatctagtctcaatggaaacccatgtaaa
cgtattagctgttacttcttattcagtttatgatttgaatttatgtttaa
gcttgtgaactttgggaggaggagaaagatgcttggagttccatgtgatc
acatatcctgagaaagtgtaataaaaactgagggcaaagacaagagagac
aggatcccctatttttttctttcttttggaaacaaaaattagaatctcct
caaagtgtttctttctgagaccttccttagctggcaaggagtcagtgaac
tcccagcctcggggcttgggctggggaggacctatgtgtgaggcggtgga
ggagaacaaacaatctctttacttatatccctcatcctccccactgttta
accagaggcccgcagcttctggtctcagcataacttagagctgagactgg
taagtgttattttataataaagcaacctttactttcacaaaacctagttt
tatcctccaccaatgctctcccttctcagctgccttcagagagagcacac
tccctgcacctaggattttgtgtgcgtgagacaagcgttccactgctgag
ctctatcccagcccaggaggagaggtttatttcagcgtacagtttcagaa
gatttcaaccaatattctactgcttcatgctttggggaattggttctttt
tctgccacagtgtaaggttttggaggatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106580770_106581522
seq2: B6Ng01-162K02.b_42_798 (reverse)

seq1  GAGTCC--TCCCCTCACTCCACCTCCCAAGGGCATCTC-TGCT-GGGCAG  46
      ||||||   ||||||||||||||||||||||||||||| |||| ||||||
seq2  GAGTCCCTCCCCCTCACTCCACCTCCCAAGGGCATCTCTTGCTGGGGCAG  50

seq1  AGGAGCTCACCTTGCGAGATCTCTCCCACGTTTAACTTACCACAGAGCAA  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTCACCTTGCGAGATCTCTCCCACGTTTAACTTACCACAGAGCAA  100

seq1  TAGTCTGGCTGCACCTGGCAGAAAACATCCTCAGGTTAATCAGAGTAGGG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGCTGCACCTGGCAGAAAACATCCTCAGGTTAATCAGAGTAGGG  150

seq1  ACAGCCTGGGCCTCAGGAAACAGCAACCCAGCTCGTATTTCCACTTCTCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGGGCCTCAGGAAACAGCAACCCAGCTCGTATTTCCACTTCTCT  200

seq1  GTTGAGGAGGTCAGCCCTGGGAAACCACCCTATTGTCCTTCCCGGTTCCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAGGTCAGCCCTGGGAAACCACCCTATTGTCCTTCCCGGTTCCC  250

seq1  CCTGACCTACATGCCGTAAGAGAAGCTACCCCAAACCCCACTGAGTAGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTACATGCCGTAAGAGAAGCTACCCCAAACCCCACTGAGTAGTG  300

seq1  AGGACCGGGTGCAGAACTCTTAAAACTCTCAGGCCTAGACTTGCTCATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCGGGTGCAGAACTCTTAAAACTCTCAGGCCTAGACTTGCTCATTC  350

seq1  TAGGCCTTCATTCTCAGTGGACTGATGGAAAGAGAGAGGCAGAGTATTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTCATTCTCAGTGGACTGATGGAAAGAGAGAGGCAGAGTATTTT  400

seq1  GTAAGCTCTGAATGCCACCCGTTCCTCCATCGCTCCATGCCTGGGAAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTCTGAATGCCACCCGTTCCTCCATCGCTCCATGCCTGGGAAAAG  450

seq1  CACGGTGCTTGGTAGTAACTGTGAGCGACAGACCCCCTCTTGCCCAGGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGCTTGGTAGTAACTGTGAGCGACAGACCCCCTCTTGCCCAGGCC  500

seq1  AGGTAAACACAACTAGCTACCACACCCTCACCTCCCACGGTGGTAGCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACACAACTAGCTACCACACCCTCACCTCCCACGGTGGTAGCTGG  550

seq1  GCAGGGTGCAGACGTAGCAAACAGCAGAGGAGTAGCTGTGGGAGGTGGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTGCAGACGTAGCAAACAGCAGAGGAGTAGCTGTGGGAGGTGGGA  600

seq1  CAGGAGTAGGAGCGGCAGATAGACGTACAGGAATGCTGACAGCACCTAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTAGGAGCGGCAGATAGACGTACAGGAATGCTGACAGCACCTAGC  650

seq1  TGCAAGGGCCTCTGTGCGCGGGCCACAGTAGTTGGGAAGAGGTGAGGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGCCTCTGTGCGCGGGCCACAGTAGTTGGGAAGAGGTGAGGTGT  700

seq1  GCAGGGTCCTCCCAGTCCTTCATTTCCCTCCAGCACAGAAGGTTCCCAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCCTCCCAGTCCTTCATTTCCCTCCAGCACAGAAGGTTCCCAGA  750

seq1  GGAATTC  753
      |||||||
seq2  GGAATTC  757

seq1: chr9_106449101_106450132
seq2: B6Ng01-162K02.g_117_1149

seq1  CTATAATTCAGACTCCCTAATCCTTCCCGTGTCACAAGCTATTTGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTCAGACTCCCTAATCCTTCCCGTGTCACAAGCTATTTGCACAA  50

seq1  AGACAGAAAGCAGGCATGAAACAGATTTACAATTAAGGAAAACATTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAGCAGGCATGAAACAGATTTACAATTAAGGAAAACATTCCTT  100

seq1  TAGGTTGTACAACCATTATCTGATAACTAAAAGCTGCAGGCTGGGAACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTACAACCATTATCTGATAACTAAAAGCTGCAGGCTGGGAACGA  150

seq1  ACAGTTTACTGTAGGTGCAAGGACAGAAGATCTCTTTATCTAGACAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTACTGTAGGTGCAAGGACAGAAGATCTCTTTATCTAGACAAAAC  200

seq1  TTCAATGCTAATGAGACACTAGGCAGATGATTTGCCTCTGACATCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGCTAATGAGACACTAGGCAGATGATTTGCCTCTGACATCCTGTG  250

seq1  TTAACTTAGACCTAAGAATTATAGTTCTAAACTTTTACTAAACCTGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTAGACCTAAGAATTATAGTTCTAAACTTTTACTAAACCTGTGGA  300

seq1  GCTAGTGGCAGACAATGTTTAGTTATCTAGTCTCAATGGAAACCCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGGCAGACAATGTTTAGTTATCTAGTCTCAATGGAAACCCATGTA  350

seq1  AACGTATTAGCTGTTACTTCTTATTCAGTTTATGATTTGAATTTATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTATTAGCTGTTACTTCTTATTCAGTTTATGATTTGAATTTATGTTT  400

seq1  AAGCTTGTGAACTTTGGGAGGAGGAGAAAGATGCTTGGAGTTCCATGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGTGAACTTTGGGAGGAGGAGAAAGATGCTTGGAGTTCCATGTGA  450

seq1  TCACATATCCTGAGAAAGTGTAATAAAAACTGAGGGCAAAGACAAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATCCTGAGAAAGTGTAATAAAAACTGAGGGCAAAGACAAGAGAG  500

seq1  ACAGGATCCCCTATTTTTTTCTTTCTTTTGGAAACAAAAATTAGAATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCCCCTATTTTTTTCTTTCTTTTGGAAACAAAAATTAGAATCTC  550

seq1  CTCAAAGTGTTTCTTTCTGAGACCTTCCTTAGCTGGCAAGGAGTCAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTGTTTCTTTCTGAGACCTTCCTTAGCTGGCAAGGAGTCAGTGA  600

seq1  ACTCCCAGCCTCGGGGCTTGGGCTGGGGAGGACCTATGTGTGAGGCGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGCCTCGGGGCTTGGGCTGGGGAGGACCTATGTGTGAGGCGGTG  650

seq1  GAGGAGAACAAACAATCTCTTTACTTATATCCCTCATCCTCCCCACTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAACAAACAATCTCTTTACTTATATCCCTCATCCTCCCCACTGTT  700

seq1  TAACCAGAGGCCCGCAGCTTCTGGTCTCAGCATAACTTAGAGCTGAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAGGCCCGCAGCTTCTGGTCTCAGCATAACTTAGAGCTGAGACT  750

seq1  GGTAAGTGTTATTTTATAATAAAGCAACCTTTACTTTCACAAAACCTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGTTATTTTATAATAAAGCAACCTTTACTTTCACAAAACCTAGT  800

seq1  TTTATCCTCCACCAATGCTCTCCCTTCTCAGCTGCCTTCCAGAGAGAGCA  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTATCCTCCACCAATGCTCTCCCTTCTCAGCTGCCTT-CAGAGAGAGCA  849

seq1  CACTCCCTGCACCTAGGATTTTGTGTGCGTGAGACAAGCGTTCCACTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTGCACCTAGGATTTTGTGTGCGTGAGACAAGCGTTCCACTGCT  899

seq1  GAGCTCTATCCCAGCCCAGGAGGAGAGGTTTATTTCAGCGTACAGTTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTATCCCAGCCCAGGAGGAGAGGTTTATTTCAGCGTACAGTTTCA  949

seq1  G-AGATTTCAACCCATAGTCTACTGCTTTCATTGCTTTGGGGAATTGGTT  999
      | ||||||||||| ||| |||||||| |||| ||||||||||||||||||
seq2  GAAGATTTCAACCAATATTCTACTGC-TTCA-TGCTTTGGGGAATTGGTT  997

seq1  C-TCTCCTGCCACAGTGTA--GGTTTGGAGGATCAA  1032
      | | | |||||||||||||  | |||||||||||||
seq2  CTTTTTCTGCCACAGTGTAAGGTTTTGGAGGATCAA  1033