BAC Information

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BAC

Clone NameB6Ng01-163D02
Chromosome9 (Build37)
Map Location 112,655,664 - 112,812,975
singlet/doubletdoublet
Overlap genenone
Upstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
Downstream geneEG622110, LOC100039391, LOC100043801, LOC100043802, LOC636680, Pdcd6ip, Clasp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163D02.bB6Ng01-163D02.g
ACCDH955841DH955842
length1,0461,206
definitionDH955841|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D02, 5' end.DH955842|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,811,944 - 112,812,975)(112,655,664 - 112,656,898)
sequence
gaattcatcctacagacttgcctacagaggcatattctcagttaagattt
cttcttcccatatgactctagtttgtgtcaagtttaccaaaacttgccag
tataatgatgaagcattactttgcatgaatcatatggccctgttttcttg
gtgactttagactggaggtggggagaggtgttcaaaatgtggagaagccc
atcttgtgttgctagctgtcttttttccatgttatttggatttttccaca
tttgtccctgaaatgcatttagaaagcacaggcatgtaccaccttgtcgt
gaatagagatcaaaggagtcacttatgcctctccctttggttttcagatc
actaaaatggtagttcccaaggaactggaatttcgtcagcaaccttcggc
tttgagaagtaagacaccgaagcctggtgtcaaccagagaaggaatttgt
catcaggaaacagattttacacctctgacattgtagatcaacttgcagga
aagactggagtgggggaagccttgccacatgatgtgcagggtcacacttt
aaccagggctgcttagctatgcatgcttcttgccctctgtttaaacctaa
accagaagactgaccaggagaaaattagaattctttgcttttcttcccag
tgtggctacactaaatctccattctctgctcctcaccatgaattattatt
tagttgggtgttgaagacgggccatctgaacctggttttgtaggtatggc
aagactcagacacagtgacttgggtgtgcaattacaggatgggcagacat
ttttttttttgccttcttttcaatcctttattttctttaaaggaacctag
ttagtctgtagtgtgcataatttagaagcactgaaagcttccttggaatt
ttctgggtgggcaagagcccaggtttctgttgagtttccctttctaacct
acagtgacatggagttacacacagcccccattttgtgtgtgaaatgcatg
agaaggtgtgcagtacgtggccaagaaccacccacagggttgcagg
gaattctctaacaagacattagaatctgaagtgctttaatttggatggtc
ttgttagtcactggagacaccaaataccaaatgctaattagatcataagg
catcataactagctagatggaaatgccagactattaaaggttatttagtc
atctagcagcaagaactttcccccagaagacatgatatatcctaattttc
cccccagatgaaaaatggaatttagaatggttaattgacagagagacaca
agtttccctgtgtttacagtgagaaaagtgttacatgtcatcctaagtat
ctaggacagtgagggaccttggtaatacttgatatttacccccaggagag
gttagcattgtgaatacgtatttatttatatctccctttaaataagaaat
acatctacatagaagcatgtcaatggtttgagcaaatgagatgtcttgtt
agaagtattgtttattattttcaagtaatatctgtagcaccagctaacta
aaaatatgtttcacataattctgaattcctttatgcttgtaatagctgag
tcattttaataagtagaaaaattaagtgtggtctacgtttaagttatttc
ttgcaaggctcattcaccttctcaaaggtagacacctattattgtatatt
ctcttagcaaaactttgtactaatgagtctctgtatttcttatcttaagg
caggcatgatagccttccatgtgcctgtttgccaaaggggttctcatgtt
ggaagaaggtgaatgatattaattgaagtcatgatacttattagaagtga
agtgtgggatgaggaaaacgtgtgttctgttctctccatctcggcttccc
atctgaggccatcataccaccgcatcttaactgctgtgagaatcaatgta
gcaatgtgggatggcaacagtcttgtgcaaggtagtagcagcagtcctct
gccatcatggtgatttctcattgtccggaattcaggacttttgatagact
gcagtagatgcaagatgagtttgattaagaaggggcaaacttccatgcat
tgtggtcgtgcttgagagaaatgagtcaaactgcctctggagttcacaga
ggcgtgtcacggtattattacatttgactcctcttagattgaaagtcaaa
tgggatacttatcagctcggtggaagtctaaagaaatctttggcagctct
acattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112811944_112812975
seq2: B6Ng01-163D02.b_44_1089 (reverse)

seq1  CCTGCAA-CCTGTGGGTGG-TCTTGG-CACGTGCTGC-CAACATCTC-TG  45
      ||||||| ||||||||||| |||||| ||||| |||| || | |||| ||
seq2  CCTGCAACCCTGTGGGTGGTTCTTGGCCACGTACTGCACACCTTCTCATG  50

seq1  CTTTTCACACACAAAGTGGGGGCTGTGTGTGACT-CATGTCACTGTAGGT  94
      | ||||||||||||| |||||||||||||| ||| |||||||||||||||
seq2  CATTTCACACACAAAATGGGGGCTGTGTGTAACTCCATGTCACTGTAGGT  100

seq1  TAGAAAGGG-AACTC-ACAGAAACCT-GGCTCTTGGCCACCCAGAAAATT  141
      ||||||||| ||||| |||||||||| |||||||| ||||||||||||||
seq2  TAGAAAGGGAAACTCAACAGAAACCTGGGCTCTTGCCCACCCAGAAAATT  150

seq1  CCAAGGAAGC-TTCAGTGCTTCT-AATTATGCACACTACAGACTAACTAG  189
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  CCAAGGAAGCTTTCAGTGCTTCTAAATTATGCACACTACAGACTAACTAG  200

seq1  GTTCC-TTAAAGAATATAAAGGATTGAAAAGAAGGC-AAAAAAAAAATGT  237
      ||||| |||||||| ||||||||||||||||||||| |||||||||||||
seq2  GTTCCTTTAAAGAAAATAAAGGATTGAAAAGAAGGCAAAAAAAAAAATGT  250

seq1  CTG-CCATCCTGTAATTGCACACCCAAGTCACTGTGTCTGAGTCTTGCCA  286
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATCCTGTAATTGCACACCCAAGTCACTGTGTCTGAGTCTTGCCA  300

seq1  TACCTACAAAACCAGGTTCAGATGGCCCGTCTTCAACACCCAACTAAATA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACAAAACCAGGTTCAGATGGCCCGTCTTCAACACCCAACTAAATA  350

seq1  ATAATTCATGGTGAGGAGCAGAGAATGGAGATTTAGTGTAGCCACACTGG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCATGGTGAGGAGCAGAGAATGGAGATTTAGTGTAGCCACACTGG  400

seq1  GAAGAAAAGCAAAGAATTCTAATTTTCTCCTGGTCAGTCTTCTGGTTTAG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAGCAAAGAATTCTAATTTTCTCCTGGTCAGTCTTCTGGTTTAG  450

seq1  GTTTAAACAGAGGGCAAGAAGCATGCATAGCTAAGCAGCCCTGGTTAAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACAGAGGGCAAGAAGCATGCATAGCTAAGCAGCCCTGGTTAAAG  500

seq1  TGTGACCCTGCACATCATGTGGCAAGGCTTCCCCCACTCCAGTCTTTCCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCTGCACATCATGTGGCAAGGCTTCCCCCACTCCAGTCTTTCCT  550

seq1  GCAAGTTGATCTACAATGTCAGAGGTGTAAAATCTGTTTCCTGATGACAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTGATCTACAATGTCAGAGGTGTAAAATCTGTTTCCTGATGACAA  600

seq1  ATTCCTTCTCTGGTTGACACCAGGCTTCGGTGTCTTACTTCTCAAAGCCG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTCTGGTTGACACCAGGCTTCGGTGTCTTACTTCTCAAAGCCG  650

seq1  AAGGTTGCTGACGAAATTCCAGTTCCTTGGGAACTACCATTTTAGTGATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGCTGACGAAATTCCAGTTCCTTGGGAACTACCATTTTAGTGATC  700

seq1  TGAAAACCAAAGGGAGAGGCATAAGTGACTCCTTTGATCTCTATTCACGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCAAAGGGAGAGGCATAAGTGACTCCTTTGATCTCTATTCACGA  750

seq1  CAAGGTGGTACATGCCTGTGCTTTCTAAATGCATTTCAGGGACAAATGTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGGTACATGCCTGTGCTTTCTAAATGCATTTCAGGGACAAATGTG  800

seq1  GAAAAATCCAAATAACATGGAAAAAAGACAGCTAGCAACACAAGATGGGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATCCAAATAACATGGAAAAAAGACAGCTAGCAACACAAGATGGGC  850

seq1  TTCTCCACATTTTGAACACCTCTCCCCACCTCCAGTCTAAAGTCACCAAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACATTTTGAACACCTCTCCCCACCTCCAGTCTAAAGTCACCAAG  900

seq1  AAAACAGGGCCATATGATTCATGCAAAGTAATGCTTCATCATTATACTGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGGCCATATGATTCATGCAAAGTAATGCTTCATCATTATACTGG  950

seq1  CAAGTTTTGGTAAACTTGACACAAACTAGAGTCATATGGGAAGAAGAAAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTGGTAAACTTGACACAAACTAGAGTCATATGGGAAGAAGAAAT  1000

seq1  CTTAACTGAGAATATGCCTCTGTAGGCAAGTCTGTAGGATGAATTC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGAGAATATGCCTCTGTAGGCAAGTCTGTAGGATGAATTC  1046

seq1: chr9_112655664_112656898
seq2: B6Ng01-163D02.g_68_1273

seq1  GAATTCTCTAACAAGACATTAGAATCTGAAGTGCTTTAATTTGGATGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACAAGACATTAGAATCTGAAGTGCTTTAATTTGGATGGTC  50

seq1  TTGTTAGTCACTGGAGACACCAAATACCAAATGCTAATTAGATCATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTCACTGGAGACACCAAATACCAAATGCTAATTAGATCATAAGG  100

seq1  CATCATAACTAGCTAGATGGAAATGCCAGACTATTAAAGGTTATTTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAACTAGCTAGATGGAAATGCCAGACTATTAAAGGTTATTTAGTC  150

seq1  ATCTAGCAGCAAGAACTTTCCCCCAGAAGACATGATATATCCTAATTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCAGCAAGAACTTTCCCCCAGAAGACATGATATATCCTAATTTTC  200

seq1  CCCCCAGATGAAAAATGGAATTTAGAATGGTTAATTGACAGAGAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGATGAAAAATGGAATTTAGAATGGTTAATTGACAGAGAGACACA  250

seq1  AGTTTCCCTGTGTTTACAGTGAGAAAAGTGTTACATGTCATCCTAAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCTGTGTTTACAGTGAGAAAAGTGTTACATGTCATCCTAAGTAT  300

seq1  CTAGGACAGTGAGGGACCTTGGTAATACTTGATATTTACCCCCAGGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAGTGAGGGACCTTGGTAATACTTGATATTTACCCCCAGGAGAG  350

seq1  GTTAGCATTGTGAATACGTATTTATTTATATCTCCCTTTAAATAAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATTGTGAATACGTATTTATTTATATCTCCCTTTAAATAAGAAAT  400

seq1  ACATCTACATAGAAGCATGTCAATGGTTTGAGCAAATGAGATGTCTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACATAGAAGCATGTCAATGGTTTGAGCAAATGAGATGTCTTGTT  450

seq1  AGAAGTATTGTTTATTATTTTCAAGTAATATCTGTAGCACCAGCTAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATTGTTTATTATTTTCAAGTAATATCTGTAGCACCAGCTAACTA  500

seq1  AAAATATGTTTCACATAATTCTGAATTCCTTTATGCTTGTAATAGCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTTTCACATAATTCTGAATTCCTTTATGCTTGTAATAGCTGAG  550

seq1  TCATTTTAATAAGTAGAAAAATTAAGTGTGGTCTACGTTTAAGTTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTAATAAGTAGAAAAATTAAGTGTGGTCTACGTTTAAGTTATTTC  600

seq1  TTGCAAGGCTCATTCACCTTCTCAAAGGTAGACACCTATTATTGTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGGCTCATTCACCTTCTCAAAGGTAGACACCTATTATTGTATATT  650

seq1  CTCTTAGCAAAACTTTGTACTAATGAGTCTCTGTATTTCTTATCTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCAAAACTTTGTACTAATGAGTCTCTGTATTTCTTATCTTAAGG  700

seq1  CAGGCATGATAGCCTTCCATGTGCCTGTTTGCCAAAGGGGTTCTCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGATAGCCTTCCATGTGCCTGTTTGCCAAAGGGGTTCTCATGTT  750

seq1  GGAAGAAGGTGAATGATATTAATTGAAGTCATGATACTTATTAGAAGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGGTGAATGATATTAATTGAAGTCATGATACTTATTAGAAGTGA  800

seq1  AGTGTGGGATGAGGAAAACGTGTGTTCTGTTCTCTCCATCTCGGCTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGATGAGGAAAACGTGTGTTCTGTTCTCTCCATCTCGGCTTCCC  850

seq1  ATCTGAGGCCATCATACCACCGCATC-TAACTGCTGTGAGAATCAATGTA  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCTGAGGCCATCATACCACCGCATCTTAACTGCTGTGAGAATCAATGTA  900

seq1  GCAATGTGGGATGGCAACAGTCTTGTGCAAGGTAGTTAGCAGCAGTCCTC  949
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAATGTGGGATGGCAACAGTCTTGTGCAAGGTAG-TAGCAGCAGTCCTC  949

seq1  TGCCATCATGGTGATTTCTCATTGTCCGGAACTCCAGGGACTTTTGATAG  999
      ||||||||||||||||||||||||||||||| ||   |||||||||||||
seq2  TGCCATCATGGTGATTTCTCATTGTCCGGAATTC--AGGACTTTTGATAG  997

seq1  ACTGCAGTAGATGCAAGAAGGAGCTGGATTAAGGAAGGGGGCAAACTTCC  1049
      ||||||||||||||||| | ||| | |||||||  | |||||||||||||
seq2  ACTGCAGTAGATGCAAG-ATGAGTTTGATTAAG--AAGGGGCAAACTTCC  1044

seq1  ATGCAATGTGTCGGTGC-TGAGAGGAAATGAAGCCAAAACTG-CTCTGTG  1097
      ||||| ||||   |||| ||||| |||||||  |  |||||| ||||| |
seq2  ATGCATTGTGGTCGTGCTTGAGA-GAAATGAGTC--AAACTGCCTCTG-G  1090

seq1  AGGTTTCATCAGGAGCGTGTCCAGCGGAATTATTTACTTTGACTCCTTCC  1147
      ||  |||| |||  |||||||   ||| ||||||   |||||||     |
seq2  AG--TTCA-CAGAGGCGTGTC--ACGGTATTATTACATTTGACT-----C  1130

seq1  CTGTAAGGTTGAAAGTCAAAATGGGGATGCATTATTCAAGTCTAGATTTG  1197
      || | || ||||||||||||   ||||| | ||| |||   || | |   
seq2  CTCTTAGATTGAAAGTCAAA--TGGGATAC-TTA-TCA--GCTCGGT---  1171

seq1  GAAAGTCCAAAAAGAAAATCTTTGGCAG-TCTAACATTG  1235
      | ||||| |||    ||||||||||||| ||| ||||||
seq2  GGAAGTCTAAA---GAAATCTTTGGCAGCTCT-ACATTG  1206