BAC Information

Click to search

BAC

Clone NameB6Ng01-163N08
Chromosome9 (Build37)
Map Location 31,983,439 - 32,129,398
singlet/doubletdoublet
Overlap geneGrit, Kcnj5
Upstream geneAplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
Downstream geneKcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163N08.bB6Ng01-163N08.g
ACCDH956320DH956321
length1,1741,155
definitionDH956320|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N08, 5' end.DH956321|Mus musculus domesticus DNA, BAC clone: B6Ng01-163N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,128,201 - 32,129,398)(31,983,439 - 31,984,602)
sequence
gaattcatggtttagaaacagagactcagatgcgagcaagcactgccaag
ccaggagggctccagaaccagccctcgtgtccactaggtcaaaatgcttc
ctgtcctaagacatgcatgacgtgacatggaaacctgggctgagtaagcg
aggtggcagtgtttccttagctttgtacatcagtggttctcaaccgtcct
aatgctacgatccttaaatgtagtttcccatgttttggcgatccccatca
atcataatttattttgttgctactttataattcataattttgctactgtc
atatatcatagcgtaaatatctggtattcaggacatatgatatgcaaacc
ctgtgattcacacattgagaaccactgctatacatgttgtgggcctcatc
gttaggagaggatggttttgctctctgttgctgtgataaaatagtttgac
ctaaatcaccttggaagaggagaaggtttgttctgtattcgtcttatagg
tccatcatggacagaactgtgaaggcatactgcttactggcttgctccct
cttgctttctcaacttgctttcttctatagcacaggcccacctgtctcag
gggagtatcacctacagaggccttgagcctccacgacaatcattaaacaa
aacagtccccacccccaccccctcccccaacattctcacaggccaatctg
atggcggcagttgagattccctcttcccatgggattctggtttgtgttaa
gatgacaaagcttaaccagttcagatggtactcagtatgtagcccttgca
aagttcacacgtgttctctcacaacccttatattgaagaggacctatgcc
cagatctgttgagagcacagacactaccctcatggtcagccctcctgctt
cttgggagggaaagcacatctgacagatgctgtatccgtcctccttttct
ttcttctccttatttgaccacgtggactgagcagcatgctcacgctgagt
tctgactgttcaaagtcacccgtgctcggataggcattttgtttccaacc
tcacatagcattatatgatttcattccctttcccaatacaatctggatct
caagggcttggcagtcattagtgtcatactcgcttcttacaaagtctcag
ctttttttttttttaaacaaccac
gaattccagaaagtctttaatttctttatttctgctttgactctgaagta
gttcagaaggtagttcagtttccatgagtctgtaggctttctgttgtttc
tcttatggctatccagctttaagccatgtgctctgataggatataggagg
ttatttcaactttttttgtacgtgttgagacttgcttttttgaacaaata
tgtggtcaggttttgagaatgttttgtgaggtgcttatttctgtgtatgc
atgtgtgctgacatgaatttatgtgcataacatgcccacaggtgcacaca
gaggtcagaatgggatttcctgaaaggggagttacaagcagttcacacct
gccatgtgggtgctgggaatcaaattccagttgtggggagtaagcacttt
gaactgctgagcctcctctccatccccaggcattaataagccttttaaaa
aggtacttgggggctggagagctggctcagcggttaagagcactgattgc
tcttctagaggtcctgagttcaattcccagcaaccacatggtggctcaca
accatctgtaatcggatctgatgccctcttctggtgtgtctgaggacagc
aacagtatactcatataaataaaataaataaatctaaaaaaatattttaa
aaaagagcatttactgcttaaaaagatactaagtgaaagatgctatattt
tcactgaagctaaaattcattcagatttattattttatcttttctgaaga
ttaaatgtaagtattacagtaatctcagggttcttttgtgtcatagtcac
agaggagacagctggttacaagggaatgcctccctgtctcaaaatacctc
ctgaactctgttcccatgcttggcattccaacacagacattcgtttatat
cttttccgctcagcttcagtccatttagcagacactgtcactaccacagt
ggattgagtatcacatttggagagcatctgggtgtgagcagactgcatgg
gccaattgccagccctcagctgaaactttgtacagttccatttattcatt
catagtgagtaactattgcccccaggcgttaaagaatcgaggccagttct
gtatgaagatagtcagcctatgaatagattgggttcttcctttatgaaaa
tttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32128201_32129398
seq2: B6Ng01-163N08.b_46_1219 (reverse)

seq1  GTGGTGTGTTTAAAAAAAAAAAAAAAAGCTGGAGACTTGTAAAGGAAAGC  50
      ||||| |||||   |||||||||||||||| |||||||   |||  ||||
seq2  GTGGT-TGTTT---AAAAAAAAAAAAAGCT-GAGACTTTGTAAG--AAGC  43

seq1  GGAGTATGAACACTTAATGACTGCCAAGCCCTTTTGAGATCCAGTATTTG  100
       ||||||| |||| |||||||||||||||||  |||||||||||   |||
seq2  -GAGTATG-ACAC-TAATGACTGCCAAGCCC--TTGAGATCCAG--ATTG  86

seq1  TATTTGGGAAAGGGGATGAAAATCATATAAATGCTATTTGTGAGGTTTGG  150
      || ||||||||||| ||| ||||||||| |||||||  ||||||| ||||
seq2  TA-TTGGGAAAGGGAATG-AAATCATAT-AATGCTA--TGTGAGG-TTGG  130

seq1  AAAC-AGATGCCTTATTCCGAGCACGGGTGACTTTTGAACAGGTCAGCAC  199
      |||| | ||||||   |||||||||||||||| |||||||| ||||| ||
seq2  AAACAAAATGCCT--ATCCGAGCACGGGTGAC-TTTGAACA-GTCAGAAC  176

seq1  TCAGCGTGAGCATGCTGCTCAGTCCACGTGGTCAAATAAGGAGAAGGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||| ||| 
seq2  TCAGCGTGAGCATGCTGCTCAGTCCACGTGGTCAAATAAGGAGAA-GAAA  225

seq1  GAAAAGGAGGACGGATACAGCATCTGTCAGATGTGCTTTCCCTCCCAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAGGACGGATACAGCATCTGTCAGATGTGCTTTCCCTCCCAAGA  275

seq1  AGCAGGAGGGCTGACCATGAGGGTAGTGTCTGTGCTCTCAACAGATCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGGGCTGACCATGAGGGTAGTGTCTGTGCTCTCAACAGATCTGG  325

seq1  GCATAGGTCCTCTTCAATATAAGGGTTGTGAGAGAACACGTGTGAACTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGTCCTCTTCAATATAAGGGTTGTGAGAGAACACGTGTGAACTTT  375

seq1  GCAAGGGCTACATACTGAGTACCATCTGAACTGGTTAAGCTTTGTCATCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGCTACATACTGAGTACCATCTGAACTGGTTAAGCTTTGTCATCT  425

seq1  TAACACAAACCAGAATCCCATGGGAAGAGGGAATCTCAACTGCCGCCATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAAACCAGAATCCCATGGGAAGAGGGAATCTCAACTGCCGCCATC  475

seq1  AGATTGGCCTGTGAGAATGTTGGGGGAGGGGGTGGGGGTGGGGACTGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGCCTGTGAGAATGTTGGGGGAGGGGGTGGGGGTGGGGACTGTTT  525

seq1  TGTTTAATGATTGTCGTGGAGGCTCAAGGCCTCTGTAGGTGATACTCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATGATTGTCGTGGAGGCTCAAGGCCTCTGTAGGTGATACTCCCC  575

seq1  TGAGACAGGTGGGCCTGTGCTATAGAAGAAAGCAAGTTGAGAAAGCAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGTGGGCCTGTGCTATAGAAGAAAGCAAGTTGAGAAAGCAAGA  625

seq1  GGGAGCAAGCCAGTAAGCAGTATGCCTTCACAGTTCTGTCCATGATGGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAGCCAGTAAGCAGTATGCCTTCACAGTTCTGTCCATGATGGAC  675

seq1  CTATAAGACGAATACAGAACAAACCTTCTCCTCTTCCAAGGTGATTTAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGACGAATACAGAACAAACCTTCTCCTCTTCCAAGGTGATTTAGG  725

seq1  TCAAACTATTTTATCACAGCAACAGAGAGCAAAACCATCCTCTCCTAACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTATTTTATCACAGCAACAGAGAGCAAAACCATCCTCTCCTAACG  775

seq1  ATGAGGCCCACAACATGTATAGCAGTGGTTCTCAATGTGTGAATCACAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCCCACAACATGTATAGCAGTGGTTCTCAATGTGTGAATCACAGG  825

seq1  GTTTGCATATCATATGTCCTGAATACCAGATATTTACGCTATGATATATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATATCATATGTCCTGAATACCAGATATTTACGCTATGATATATG  875

seq1  ACAGTAGCAAAATTATGAATTATAAAGTAGCAACAAAATAAATTATGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGCAAAATTATGAATTATAAAGTAGCAACAAAATAAATTATGATT  925

seq1  GATGGGGATCGCCAAAACATGGGAAACTACATTTAAGGATCGTAGCATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGATCGCCAAAACATGGGAAACTACATTTAAGGATCGTAGCATTA  975

seq1  GGACGGTTGAGAACCACTGATGTACAAAGCTAAGGAAACACTGCCACCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGTTGAGAACCACTGATGTACAAAGCTAAGGAAACACTGCCACCTC  1025

seq1  GCTTACTCAGCCCAGGTTTCCATGTCACGTCATGCATGTCTTAGGACAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTCAGCCCAGGTTTCCATGTCACGTCATGCATGTCTTAGGACAGG  1075

seq1  AAGCATTTTGACCTAGTGGACACGAGGGCTGGTTCTGGAGCCCTCCTGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTGACCTAGTGGACACGAGGGCTGGTTCTGGAGCCCTCCTGGC  1125

seq1  TTGGCAGTGCTTGCTCGCATCTGAGTCTCTGTTTCTAAACCATGAATTC  1198
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTGCTTGCTCGCATCTGAGTCTCTGTTTCTAAACCATGAATTC  1174

seq1: chr9_31983439_31984602
seq2: B6Ng01-163N08.g_69_1223

seq1  GAATTCCAGAAAGTCTTTAATTTCTTTATTTCTGCTTTGACTCTGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAGTCTTTAATTTCTTTATTTCTGCTTTGACTCTGAAGTA  50

seq1  GTTCAGAAGGTAGTTCAGTTTCCATGAGTCTGTAGGCTTTCTGTTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAAGGTAGTTCAGTTTCCATGAGTCTGTAGGCTTTCTGTTGTTTC  100

seq1  TCTTATGGCTATCCAGCTTTAAGCCATGTGCTCTGATAGGATATAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGCTATCCAGCTTTAAGCCATGTGCTCTGATAGGATATAGGAGG  150

seq1  TTATTTCAACTTTTTTTGTACGTGTTGAGACTTGCTTTTTTGAACAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAACTTTTTTTGTACGTGTTGAGACTTGCTTTTTTGAACAAATA  200

seq1  TGTGGTCAGGTTTTGAGAATGTTTTGTGAGGTGCTTATTTCTGTGTATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCAGGTTTTGAGAATGTTTTGTGAGGTGCTTATTTCTGTGTATGC  250

seq1  ATGTGTGCTGACATGAATTTATGTGCATAACATGCCCACAGGTGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCTGACATGAATTTATGTGCATAACATGCCCACAGGTGCACACA  300

seq1  GAGGTCAGAATGGGATTTCCTGAAAGGGGAGTTACAAGCAGTTCACACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGAATGGGATTTCCTGAAAGGGGAGTTACAAGCAGTTCACACCT  350

seq1  GCCATGTGGGTGCTGGGAATCAAATTCCAGTTGTGGGGAGTAAGCACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTGGGTGCTGGGAATCAAATTCCAGTTGTGGGGAGTAAGCACTTT  400

seq1  GAACTGCTGAGCCTCCTCTCCATCCCCAGGCATTAATAAGCCTTTTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCTGAGCCTCCTCTCCATCCCCAGGCATTAATAAGCCTTTTAAAA  450

seq1  AGGTACTTGGGGGCTGGAGAGCTGGCTCAGCGGTTAAGAGCACTGATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTGGGGGCTGGAGAGCTGGCTCAGCGGTTAAGAGCACTGATTGC  500

seq1  TCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACA  550

seq1  ACCATCTGTAATCGGATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTGTAATCGGATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAGC  600

seq1  AACAGTATACTCATATAAATAAAATAAATAAATCTAAAAAAATATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATACTCATATAAATAAAATAAATAAATCTAAAAAAATATTTTAA  650

seq1  AAAAGAGCATTTACTGCTTAAAAAGATACTAAGTGAAAGATGCTATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCATTTACTGCTTAAAAAGATACTAAGTGAAAGATGCTATATTT  700

seq1  TCACTGAAGCTAAAATTCATTCAGATTTATTATTTTATCTTTTCTGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAGCTAAAATTCATTCAGATTTATTATTTTATCTTTTCTGAAGA  750

seq1  TTAAATGTAAGTATTACAGTAATCTCAGGGTTCTTTTGTGTCATAGTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTAAGTATTACAGTAATCTCAGGGTTCTTTTGTGTCATAGTCAC  800

seq1  AGAGGAGACAGCTGGTTACAAGGGAATGCCTCCCTGTCTCAAAATACCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGACAGCTGGTTACAAGGGAATGCCTCCCTGTCTCAAAATACCTC  850

seq1  CTGAACTCTGTTCCCATGCTTGGCATTCCAACACAGACATTCG-TTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  CTGAACTCTGTTCCCATGCTTGGCATTCCAACACAGACATTCGTTTATAT  900

seq1  C-TCTCCGCTCAGC-TCAGTCCATTTAGCAGACACTGTCACTACCACAGT  947
      | | |||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTTCCGCTCAGCTTCAGTCCATTTAGCAGACACTGTCACTACCACAGT  950

seq1  GGATTGAGTATTCACATTTGGAGAGCATCTGGGTGTGAGCAGACTGCATG  997
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGTA-TCACATTTGGAGAGCATCTGGGTGTGAGCAGACTGCATG  999

seq1  GGCCAATTGCCAGCCCTCCAGCTGAAACTTTGTACAGTTTCCATTATTCC  1047
      ||||||||||||||||| ||||||||||||||||||||| |  |||||| 
seq2  GGCCAATTGCCAGCCCT-CAGCTGAAACTTTGTACAGTTCCATTTATTC-  1047

seq1  ATTTCATAGTTGAGTAAACTATTGCCCCCAGGCGTTAAAGAATCGAGGCA  1097
        ||||||| ||||| ||||||||||||||||||||||||||||||||| 
seq2  -ATTCATAG-TGAGT-AACTATTGCCCCCAGGCGTTAAAGAATCGAGGCC  1094

seq1  GGTTCTGTATTGAGGATAGTCCAGCCTATGATTTAGATTGTGTTTCTTTC  1147
       |||||||| ||| |||||| ||||||||||  ||||||| | ||||| |
seq2  AGTTCTGTA-TGAAGATAGT-CAGCCTATGA-ATAGATTG-GGTTCTTCC  1140

seq1  TTTTTATGAAAATTTAT  1164
        |||||||||||||||
seq2  --TTTATGAAAATTTAT  1155