BAC Information

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BAC

Clone NameB6Ng01-164G02
Chromosome9 (Build37)
Map Location 28,352,123 - 28,353,228
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164G02.bB6Ng01-164G02.g
ACCDH956723DH956724
length1,1001,184
definitionDH956723|Mus musculus domesticus DNA, BAC clone: B6Ng01-164G02, 5' end.DH956724|Mus musculus domesticus DNA, BAC clone: B6Ng01-164G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccggaaggggagacctggaaaggggaaaacatttgaaatgtaact
aaagaaaatatccaagaaataaaaagagttgagagaagaaagtaagggaa
aagaaaacagtgacaaagcaatgtctctcagggagacattgtattctttc
ctcagggagacatcgtgttctttcctcagggagacattgtgttcttctcc
aggttaatgggctgagctcttcagttcctcaccctcctagcttcattaca
ctgacagagtggtctgaatgggggctcttggctctactttgtatatctgt
aacacactgaaacctcatctctcagcaccgatttccaaaactgctcagct
accccagtgtatgcttagtgtaccacccaagtctttggactaaggagttt
tacatttttctccatataatcaggtagtcaagtatttttgtcatgcttta
ttttctagcataactatgtctttacacgaagttaaagtaagtttattatg
ttactaaaacttaggcctctcctcattattttcttactcatttatttact
gaagttcagtgatcagtggctgggatactgtgctaatgctaccgtctaca
gccagagtgttctctggaatttataggggcgggctacggatgtggctttc
ccttccaggtccagtgcaagatgttctaccctccttttcaaagtagagca
tcattatagcttctgctggacagagagggaaagtagggctcataagattt
cagaacatgggttttacaacctgtgttcttctgtgtcgtcttagagaaca
ctaactgaatcaaaccgttagcttgttgactaaagagataaaggttatga
ggacactgccgtatgcattctttcgaaactcggagttcatgttttcaccc
tgcctgtaagtgcccttgtgccacatttcatatgtgcttttgaagaactg
cttctcgagctttcattgatgatttagcccattgactcaattaggatgta
gcagtggctaaggaggactgagcctacacaaccacttttcggccttcaga
atctgccctccccctattcattgtgctgggctattccttaggaggatcag

gaattctcacttgaggaatactgaatggcggagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctctcaccagtcagaatggcaagatcaaaaattcaggggacagat
gatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcag
aaaattggacatagtactactggaggatcctgcaatacctctcctgggca
tatatccagaagatgttccaaccggtaagaaggacacatgctccactatg
ttcatagcagccttatttatgatagccagaagctggataaaacccagatg
cccctcaacagaggaatggatacaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggaggacatcatcctgagtgaggtaacccaatcacaaaa
gaactcacatgatatgtactcactgataagtggatattagcccaaaaatt
tagaatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagaccaaagtgtggatactttgccccttcttagaattgggaa
caaaacacccatgaaaggagttacagagacagtttggagctgagatgaaa
agatggaccatctagtgactgccatacctgggtatccatcccataatcag
cctccaaacactgacaccattgcatacactagcaagatttttcctgaaat
gaccctgatatatctgtctcttgtgaaattatggccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacagggccccaa
tagaggagctagaagaaagtacccaagtagctggggggatctgcaaccct
aatagtagaacacatatgacttaaacttgtaccccccggagctggtgtct
cttagctacatatgtatcagaagatgggccctaggtctacattcactggc
aagggaaggtcctctgggtaatgcacttattgctcaagttacgggcaccg
catgtccataattggtgaattggtgtgatggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28352123_28353228
seq2: B6Ng01-164G02.b_49_1148

seq1  GAATTCCGGAAGGGGAGACCTGGAAAGGGGAAAACATTTGAAATGTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGAAGGGGAGACCTGGAAAGGGGAAAACATTTGAAATGTAACT  50

seq1  AAAGAAAATATCCAAGAAATAAAAAGAGTTGAGAGAAGAAAGTAAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATATCCAAGAAATAAAAAGAGTTGAGAGAAGAAAGTAAGGGAA  100

seq1  AAGAAAACAGTGACAAAGCAATGTCTCTCAGGGAGACATTGTATTCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAGTGACAAAGCAATGTCTCTCAGGGAGACATTGTATTCTTTC  150

seq1  CTCAGGGAGACATCGTGTTCTTTCCTCAGGGAGACATTGTGTTCTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGACATCGTGTTCTTTCCTCAGGGAGACATTGTGTTCTTCTCC  200

seq1  AGGTTAATGGGCTGAGCTCTTCAGTTCCTCACCCTCCTAGCTTCATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATGGGCTGAGCTCTTCAGTTCCTCACCCTCCTAGCTTCATTACA  250

seq1  CTGACAGAGTGGTCTGAATGGGGGCTCTTGGCTCTACTTTGTATATCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAGTGGTCTGAATGGGGGCTCTTGGCTCTACTTTGTATATCTGT  300

seq1  AACACACTGAAACCTCATCTCTCAGCACCGATTTCCAAAACTGCTCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTGAAACCTCATCTCTCAGCACCGATTTCCAAAACTGCTCAGCT  350

seq1  ACCCCAGTGTATGCTTAGTGTACCACCCAAGTCTTTGGACTAAGGAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTGTATGCTTAGTGTACCACCCAAGTCTTTGGACTAAGGAGTTT  400

seq1  TACATTTTTCTCCATATAATCAGGTAGTCAAGTATTTTTGTCATGCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTTCTCCATATAATCAGGTAGTCAAGTATTTTTGTCATGCTTTA  450

seq1  TTTTCTAGCATAACTATGTCTTTACACGAAGTTAAAGTAAGTTTATTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCATAACTATGTCTTTACACGAAGTTAAAGTAAGTTTATTATG  500

seq1  TTACTAAAACTTAGGCCTCTCCTCATTATTTTCTTACTCATTTATTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAACTTAGGCCTCTCCTCATTATTTTCTTACTCATTTATTTACT  550

seq1  GAAGTTCAGTGATCAGTGGCTGGGATACTGTGCTAATGCTACCGTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCAGTGATCAGTGGCTGGGATACTGTGCTAATGCTACCGTCTACA  600

seq1  GCCAGAGTGTTCTCTGGAATTTATAGGGGCGGGCTACGGATGTGGCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTGTTCTCTGGAATTTATAGGGGCGGGCTACGGATGTGGCTTTC  650

seq1  CCTTCCAGGTCCAGTGCAAGATGTTCTACCCTCCTTTTCAAAGTAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGTCCAGTGCAAGATGTTCTACCCTCCTTTTCAAAGTAGAGCA  700

seq1  TCATTATAGCTTCTGCTGGACAGAGAGGGAAAGTAGGGCTCATAAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAGCTTCTGCTGGACAGAGAGGGAAAGTAGGGCTCATAAGATTT  750

seq1  CAGAACATGGGTTTTACAACCTGTGTTCTTCTGTGTCGTCTTAGAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATGGGTTTTACAACCTGTGTTCTTCTGTGTCGTCTTAGAGAACA  800

seq1  CTAACTGAATCAAACCGTTAGCTTGTTGACTAAAGAGATAAAGGTTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGAATCAAACCGTTAGCTTGTTGACTAAAGAGATAAAGGTTATGA  850

seq1  GGACACTGCCGTATGCATTCTTTCGAAACTCGGAGTTCATGTTTTCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGCCGTATGCATTCTTTCGAAACTCGGAGTTCATGTTTTCACCC  900

seq1  TGCCTGTAAGTGCCCTTGTGCCACAATTTCATATGTGCTTTTGAAGAACT  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCCTGTAAGTGCCCTTGTGCCAC-ATTTCATATGTGCTTTTGAAGAACT  949

seq1  GCTTCTCGAGCTTTTCATTTGATGATTTAGCCCATTGAACTCAATTAGGA  1000
      ||||||||||| ||||| ||||||||||||||||||| ||||||||||||
seq2  GCTTCTCGAGC-TTTCA-TTGATGATTTAGCCCATTG-ACTCAATTAGGA  996

seq1  TGTTAGCAGTTGGCTAAAGAGGACTGAGCCTACACAACACTTTTTCGGCC  1050
      || |||||| ||||||| ||||||||||||||||||||   |||||||||
seq2  TG-TAGCAG-TGGCTAAGGAGGACTGAGCCTACACAACCACTTTTCGGCC  1044

seq1  TTCCAGAATCTGCCCT-CCACTA-TCATTGTGCTGGGCCTATTCCTTAGG  1098
      || ||||||||||||| || ||| ||||||||||||| ||||||||||||
seq2  TT-CAGAATCTGCCCTCCCCCTATTCATTGTGCTGGG-CTATTCCTTAGG  1092

seq1  AGGATCAG  1106
      ||||||||
seq2  AGGATCAG  1100