BAC Information

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BAC

Clone NameB6Ng01-165E18
Chromosome9 (Build37)
Map Location 35,095,417 - 35,247,629
singlet/doubletdoublet
Overlap genenone
Upstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394
Downstream geneCdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846, D730048I06Rik, 9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E18.bB6Ng01-165E18.g
ACCDH957393DH957394
length1,263774
definitionDH957393|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E18, 5' end.DH957394|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,246,377 - 35,247,629)(35,095,417 - 35,096,187)
sequence
gaattctgtaacagacattttgtaactgctctatctaaaggaaagagacc
agggaagtgtgccctgcagctctctcctgtcacaatgtatctttcctcat
ccttagcaaatgccaaaactgcactgactaagggagaaagaggagagcaa
gccaaaggcaaccttagccctaacactgaagtgcaatgcttccatgaaca
aggcagagtttatgtgtactcatgaaacaaacaatagctatttattaagt
gtgagacatgaagttcatggttttattgtaagagcttaaatgaagggaac
cccctttactttatactcaaaaacaaaatgcttgtagaaatttgcctggt
aaacccttgttctgtaagtggtacccaccatgtcacggataaaccgtcag
tgaggcatccatggaattctacaaacactgtcagaaatgtgtatatagtg
aaagcaaagttcttctcgagacttgggagttatctttaaaaagaaaatta
ctgaacaaaagaatattacccatttgaaaactactcaagtgggagaaagc
aagctggatttaactcacgcatgccactgcctatacagaaacacattaat
atatgcaactaatacacgctaataaaagaaatagaaacaaatgatactca
ttttcaaaactgaaggtgggggagaaaaacactcaggtaccaagcactcc
aagaatctacatttgaggcatcgcatcacgccacataaccgcctcctttc
tctctgctggcttcattgccaacataagcagctcagaggagaagcccaga
tggcaggtgtgggtgttccagaacatcagatattgttttgtttatctgaa
ttacaatcttggctcaaacgacctgggggtgcaaataaaacatactgcta
attaaaataaccagcagcagtactaataaaacatctaaaaagcaacgatt
ttatagagagagggccttttaggagcttgcctcctttaccctcgggatac
agaacaaccagcatggccattaaaactagcttgaagttatcccaggttct
gcctggagggaggataaaaagcaaccagaaggtcttggggccaggcgaaa
ccaaacatgaaccaaagggatcatacttgactacatggcatcttgcgaca
aacaccctagccccacgggaacagcaaagaagccacatccttacaccagc
aatggtgtgatgattgtctgaaccttaccttacaggcaactgccaggttt
aagaaagggatac
gaattcaaagttttctaggtagaaggggtggggtgggaccccagaggaag
gagcagcacagttggtctgcgtgtggtttgatgttactgcagtgtggagt
ctgggcaggagtggactgctggagagaaagcccagtgacctttttggcaa
taaggtctcccatcctcacaactgggtcccctgtagtcgtggaaagagtt
tgcctgtcagcacttagggcccttcttatcatttccagggagtctcatta
tccggctgacaaccttttgtcctaccaggctggccctttgtgggctcctc
ccagacctgtgatccaggcagcctatgtcaagggtattggcccctattca
gaacctcagaaaaagtgggggaaggcttggagctgatctagagctccagt
tgggaaggtgagaaaggagtcacactcctccattctgattccagggccca
tagatgttaagtctgatcacagcaggatgagctccgaagcctgtttcgtg
acaaccttctttatgttcactggccccttgtaatctcttctttcatttcc
ctcttccccttacctgctctttccctccctctttccctctatttcctccc
ttctcccttccccctctccaagcccccctgcctccacttctgtctggaga
tgtagcagtttccctccttccccttctgccttctagtaccttcttcctac
tgagtgccctttccttcctctttacagctctctccgtagtgaacacatcc
agatgtgggctgtgttcttaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_35246377_35247629
seq2: B6Ng01-165E18.b_44_1306 (reverse)

seq1  GTATCCCCTTCTT-AACCTGGCAGGTGTTGGCTGTAGTGTAA-GTTCAGC  48
      ||||||| ||||| |||||||||   |||| |||||  |||| |||||| 
seq2  GTATCCCTTTCTTAAACCTGGCA---GTTGCCTGTAAGGTAAGGTTCAGA  47

seq1  AAATCATCCACACATTTGCTGTTGTTAGGATGTGGCTTCTTTGCTGTTCC  98
       |||||| |||||  |||||| ||| ||||||||||||||||||||||||
seq2  CAATCAT-CACACCATTGCTGGTGTAAGGATGTGGCTTCTTTGCTGTTCC  96

seq1  TGT-GGGCTA-GGTGTTTGTCTGCAGATGCCTGGTAAGTC-AGTATGATG  145
       || |||||| ||||||||||   |||||||  || |||| |||||||| 
seq2  CGTGGGGCTAGGGTGTTTGTCGCAAGATGCCATGT-AGTCAAGTATGATC  145

seq1  CCTTTGTGTCATGTTTGGTTCTGCCTGGCCCC-AGA-CTTCT-GTTGCTT  192
      ||||||  ||||||||||||  |||||||||| ||| ||||| |||||||
seq2  CCTTTGGTTCATGTTTGGTTTCGCCTGGCCCCAAGACCTTCTGGTTGCTT  195

seq1  TTTATCCT-CCTCCA-GCAGAACCTGGGATACCT--CAGCTAGTTTTAAT  238
      |||||||| |||||| ||||||||||||||| ||   |||||||||||||
seq2  TTTATCCTCCCTCCAGGCAGAACCTGGGATAACTTCAAGCTAGTTTTAAT  245

seq1  GG-CATGCTGGTTGTTCTGTATCCCGAGG--TAAGGAGGCAAGCTCCTAA  285
      || ||||||||||||||||||||||||||   ||||||||||||||||||
seq2  GGCCATGCTGGTTGTTCTGTATCCCGAGGGTAAAGGAGGCAAGCTCCTAA  295

seq1  AAGGCCCTCTCTCTATAAAATCGTTGCTTTTTAGATGTTTTATTAGTACT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCTCTCTCTATAAAATCGTTGCTTTTTAGATGTTTTATTAGTACT  345

seq1  GCTGCTGGTTATTTTAATTAGCAGTATGTTTTATTTGCACCCCCAGGTCG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGGTTATTTTAATTAGCAGTATGTTTTATTTGCACCCCCAGGTCG  395

seq1  TTTGAGCCAAGATTGTAATTCAGATAAACAAAACAATATCTGATGTTCTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCAAGATTGTAATTCAGATAAACAAAACAATATCTGATGTTCTG  445

seq1  GAACACCCACACCTGCCATCTGGGCTTCTCCTCTGAGCTGCTTATGTTGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCCACACCTGCCATCTGGGCTTCTCCTCTGAGCTGCTTATGTTGG  495

seq1  CAATGAAGCCAGCAGAGAGAAAGGAGGCGGTTATGTGGCGTGATGCGATG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGCCAGCAGAGAGAAAGGAGGCGGTTATGTGGCGTGATGCGATG  545

seq1  CCTCAAATGTAGATTCTTGGAGTGCTTGGTACCTGAGTGTTTTTCTCCCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATGTAGATTCTTGGAGTGCTTGGTACCTGAGTGTTTTTCTCCCC  595

seq1  CACCTTCAGTTTTGAAAATGAGTATCATTTGTTTCTATTTCTTTTATTAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAGTTTTGAAAATGAGTATCATTTGTTTCTATTTCTTTTATTAG  645

seq1  CGTGTATTAGTTGCATATATTAATGTGTTTCTGTATAGGCAGTGGCATGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTATTAGTTGCATATATTAATGTGTTTCTGTATAGGCAGTGGCATGC  695

seq1  GTGAGTTAAATCCAGCTTGCTTTCTCCCACTTGAGTAGTTTTCAAATGGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTAAATCCAGCTTGCTTTCTCCCACTTGAGTAGTTTTCAAATGGG  745

seq1  TAATATTCTTTTGTTCAGTAATTTTCTTTTTAAAGATAACTCCCAAGTCT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTTTTGTTCAGTAATTTTCTTTTTAAAGATAACTCCCAAGTCT  795

seq1  CGAGAAGAACTTTGCTTTCACTATATACACATTTCTGACAGTGTTTGTAG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAAGAACTTTGCTTTCACTATATACACATTTCTGACAGTGTTTGTAG  845

seq1  AATTCCATGGATGCCTCACTGACGGTTTATCCGTGACATGGTGGGTACCA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATGGATGCCTCACTGACGGTTTATCCGTGACATGGTGGGTACCA  895

seq1  CTTACAGAACAAGGGTTTACCAGGCAAATTTCTACAAGCATTTTGTTTTT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAACAAGGGTTTACCAGGCAAATTTCTACAAGCATTTTGTTTTT  945

seq1  GAGTATAAAGTAAAGGGGGTTCCCTTCATTTAAGCTCTTACAATAAAACC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATAAAGTAAAGGGGGTTCCCTTCATTTAAGCTCTTACAATAAAACC  995

seq1  ATGAACTTCATGTCTCACACTTAATAAATAGCTATTGTTTGTTTCATGAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTCATGTCTCACACTTAATAAATAGCTATTGTTTGTTTCATGAG  1045

seq1  TACACATAAACTCTGCCTTGTTCATGGAAGCATTGCACTTCAGTGTTAGG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAACTCTGCCTTGTTCATGGAAGCATTGCACTTCAGTGTTAGG  1095

seq1  GCTAAGGTTGCCTTTGGCTTGCTCTCCTCTTTCTCCCTTAGTCAGTGCAG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGTTGCCTTTGGCTTGCTCTCCTCTTTCTCCCTTAGTCAGTGCAG  1145

seq1  TTTTGGCATTTGCTAAGGATGAGGAAAGATACATTGTGACAGGAGAGAGC  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCATTTGCTAAGGATGAGGAAAGATACATTGTGACAGGAGAGAGC  1195

seq1  TGCAGGGCACACTTCCCTGGTCTCTTTCCTTTAGATAGAGCAGTTACAAA  1235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGCACACTTCCCTGGTCTCTTTCCTTTAGATAGAGCAGTTACAAA  1245

seq1  ATGTCTGTTACAGAATTC  1253
      ||||||||||||||||||
seq2  ATGTCTGTTACAGAATTC  1263

seq1: chr9_35095417_35096187
seq2: B6Ng01-165E18.g_72_845

seq1  GAATTCAAAGTTTTCTAGGTAGAAGGGGTGGGGTGGGACCCCAGAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTTTTCTAGGTAGAAGGGGTGGGGTGGGACCCCAGAGGAAG  50

seq1  GAGCAGCACAGTTGGTCTGCGTGTGGTTTGATGTTACTGCAGTGTGGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCACAGTTGGTCTGCGTGTGGTTTGATGTTACTGCAGTGTGGAGT  100

seq1  CTGGGCAGGAGTGGACTGCTGGAGAGAAAGCCCAGTGACCTTTTTGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGGAGTGGACTGCTGGAGAGAAAGCCCAGTGACCTTTTTGGCAA  150

seq1  TAAGGTCTCCCATCCTCACAACTGGGTCCCCTGTAGTCGTGGAAAGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCTCCCATCCTCACAACTGGGTCCCCTGTAGTCGTGGAAAGAGTT  200

seq1  TGCCTGTCAGCACTTAGGGCCCTTCTTATCATTTCCAGGGAGTCTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCAGCACTTAGGGCCCTTCTTATCATTTCCAGGGAGTCTCATTA  250

seq1  TCCGGCTGACAACCTTTTGTCCTACCAGGCTGGCCCTTTGTGGGCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGCTGACAACCTTTTGTCCTACCAGGCTGGCCCTTTGTGGGCTCCTC  300

seq1  CCAGACCTGTGATCCAGGCAGCCTATGTCAAGGGTATTGGCCCCTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTGTGATCCAGGCAGCCTATGTCAAGGGTATTGGCCCCTATTCA  350

seq1  GAACCTCAGAAAAAGTGGGGGAAGGCTTGGAGCTGATCTAGAGCTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCAGAAAAAGTGGGGGAAGGCTTGGAGCTGATCTAGAGCTCCAGT  400

seq1  TGGGAAGGTGAGAAAGGAGTCACACTCCTCCATTCTGATTCCAGGGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGGTGAGAAAGGAGTCACACTCCTCCATTCTGATTCCAGGGCCCA  450

seq1  TAGATGTTAAGTCTGATCACAGCAGGATGAGCTCCGAAGCCTG-TTCGTG  499
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGATGTTAAGTCTGATCACAGCAGGATGAGCTCCGAAGCCTGTTTCGTG  500

seq1  ACAACCTTCTTTATGTTCACTGGCCCCTTGTAATCTCTTCTTTCATTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTCTTTATGTTCACTGGCCCCTTGTAATCTCTTCTTTCATTTCC  550

seq1  CTCTTCCCCTTACCTGCTC-TTCCCTCCCTCTTTCCCTCTA-TTCCTCCC  597
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  CTCTTCCCCTTACCTGCTCTTTCCCTCCCTCTTTCCCTCTATTTCCTCCC  600

seq1  TTCTCCCTTCCCCCTCTCCAAG-CCCCCTGCCTCCACTTCTGTCTGGAGA  646
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTCCCTTCCCCCTCTCCAAGCCCCCCTGCCTCCACTTCTGTCTGGAGA  650

seq1  TGTAGCAGTTTCCCTCCTTCCCCTTCTGCCTTTCTAGTACCTTCTTCCTA  696
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTAGCAGTTTCCCTCCTTCCCCTTCTGCC-TTCTAGTACCTTCTTCCTA  699

seq1  CTGAGTGCCCTTTCCTTCCTCTTTACAGCTCTCTCCGTAGGTGAACACAT  746
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGAGTGCCCTTTCCTTCCTCTTTACAGCTCTCTCCGTA-GTGAACACAT  748

seq1  CCAGATGT-GGCTGTGTTCTTAATGT  771
      |||||||| |||||||||||||||||
seq2  CCAGATGTGGGCTGTGTTCTTAATGT  774