BAC Information

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BAC

Clone NameB6Ng01-165F18
Chromosome9 (Build37)
Map Location 40,734,530 - 40,876,185
singlet/doubletdoublet
Overlap gene4931429I11Rik, Crtam, 2810457I06Rik
Upstream geneLOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx
Downstream geneLOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165F18.bB6Ng01-165F18.g
ACCDH957437DH957438
length1,1011,112
definitionDH957437|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F18, 5' end.DH957438|Mus musculus domesticus DNA, BAC clone: B6Ng01-165F18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,875,092 - 40,876,185)(40,734,530 - 40,735,633)
sequence
gaattcacttccctttgcttgtggggctgaggaaggagccccagcctctt
ggcggatgttggctgtaagccacttgcaagtcctggaggccacctagagc
ctgccatgtgcttctctctctgtaggcagttcctgctctggagccagcag
gacactgcgtctcttggagtcttctgtgtgaaatgtagtggaatctcaga
tgctgcagcctggcactgctgccacgttttgttggataagagatgggatt
aaacaaagccgggagtagctaaagggatgtgtacaaagatgtccctttag
agtgcttgccacacttgggaagaatacttttaacatcatgacagcggcca
cataatttaacattatcacctcctgtgtgtcagataccatgccagctgtt
gaagctacagaaaagaaagaaaggaagaaggaaagaaagaaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaga
aagggcctgtgcttcaaatagttcacaataattgcaggaggcatgagttt
tataattgggaagatgggtacaggggatgtggatgcccagagacatcagg
aagcttgcatgagatgacaagccacaggtgaagtgttcaggcataggcag
agaccagccaagcaagcaaaggtggatctcagccaataggagaggcaaga
tcttgggagcagagtgagagttgaagactcaggagctgggagaagaggga
ggccctggtttgggctctgtgtgctgaggttaaaaaggtcgttcatgatg
ttggagatggggctttagcataagcggagagattgcattgaagccatggt
ggcagcaggttcttaacccatttgtcctgcttttaccccggattctacaa
tacttctggctttcgcacctcgaatccttgtgtatagtattgctcacgaa
tctgccattatcccaagattgtttgttcgttggctagttaggtcttttgt
atgcttcttgaattaaagttcatccagtctgggtgatattgggttgtaac
cctggcctctttctctgttggaaacgggacagggtatccgaggggtgaaa
a
gaattccaagaacggatgtccgtgcctagctaccattatcatgatgttaa
acagaaacctgacttgcttaaaagaaaaatcaactctgatgagaaatgaa
gagaaggaaacattctaactagggtgactaagcaggcaaggatactcttt
taatcttgaaaaggcttagcatgtcttctggagggaacaggagagatgac
caataggaagtagattccctagcttttgcaaaggcaaagagaaacataag
atgtgttttaggttatggggattatcattggtgacattaattttctattg
acaactgtgatggtttgtatatgcttgggtcagggagtggcactattagg
aggcatgccttgttggagtaggtgtgtcactgtgggcatgggctttaata
ccctagtcctgactgcctggaagtcagtattctgctagcagccttagatg
aagacatagaactctcacttcctcctgcaccatgcctgcctggatgctgc
catgttccctccttgatgataatggactgaacctctgaacctgtaagtca
gccccaattaaatgttgtccttataagagttgccttggtcatggtgtctg
ttcacagcagtaaaaccctaactaagacaacaaccatgcttgcatagttc
tgtcaaaaacttcacatattgctaatcaagcattggctgcttcttttgcc
agggagtgaaggacacacagtgcttttgtgcacaatattttggtgaagct
tggctgaatcaccccagagagctcgctgggcaggtaaaacatacttctac
attagctctttgaaagtggagtgggacacaacctctgcatctattttttt
ctttttctttctttctttttttttttgtgaaccattctattaataccaat
caaatcgagaaaatgatcaaatgaaattgcattttgagcatcgaaagctg
tgtaatgtctattctgttaattgggggcctataattgcttctgtactgaa
agatacaacaaatgacagcaatcatgggcatgttcattatcccaggactt
agaaaaccggcccttgccaggagaaacctctaaagccttgtggttctctc
caaattgcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_40875092_40876185
seq2: B6Ng01-165F18.b_44_1144 (reverse)

seq1  TTTTCA-CCCTCGACTA-CCTGTCCCG-TTCTACCAGAGAAAAGAGCCAG  47
      |||||| ||||||  || ||||||||| ||| | ||||||||   |||||
seq2  TTTTCACCCCTCGGATACCCTGTCCCGTTTCCAACAGAGAAAGAGGCCAG  50

seq1  GG-TACAACCAAATTTCACCCAG-CT-GATGAACTTTATTTCAAGAGGCA  94
      || ||||||| ||| |||||||| || ||||||||||| ||||||| |||
seq2  GGTTACAACCCAATATCACCCAGACTGGATGAACTTTAATTCAAGAAGCA  100

seq1  TCCAAA--GCCTGACTAGCCAACGAACAAAACAATCTTGGGAT-ATGGCA  141
      | ||||   ||| |||||||||||||| ||||||||||||||| ||||||
seq2  TACAAAAGACCTAACTAGCCAACGAAC-AAACAATCTTGGGATAATGGCA  149

seq1  GATTCGTGAGCAGTACTATACAC-AGGATTCGAGGTGCGAAAGCCAGAAG  190
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GATTCGTGAGCAATACTATACACAAGGATTCGAGGTGCGAAAGCCAGAAG  199

seq1  TATTGTAGGAATCCGGGGT-AAAGCA-GACCAATGGGTTAAGAACCTGCT  238
      ||||||| ||||||||||| |||||| ||| |||||||||||||||||||
seq2  TATTGTA-GAATCCGGGGTAAAAGCAGGACAAATGGGTTAAGAACCTGCT  248

seq1  GCCACCATGGCTTCAATGCAATCTCTCCGCTTATGCTAAAG-CCCATCTC  287
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCCACCATGGCTTCAATGCAATCTCTCCGCTTATGCTAAAGCCCCATCTC  298

seq1  CAACATCATGAACGACCTTTTTAACCTCAGCACACAGAGCCCAAACCAGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATGAACGACCTTTTTAACCTCAGCACACAGAGCCCAAACCAGG  348

seq1  GCCTCCCTCTTCTCCCAGCTCCTGAGTCTTCAACTCTCACTCTGCTCCCA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTCTTCTCCCAGCTCCTGAGTCTTCAACTCTCACTCTGCTCCCA  398

seq1  AGATCTTGCCTCTCCTATTGGCTGAGATCCACCTTTGCTTGCTTGGCTGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGCCTCTCCTATTGGCTGAGATCCACCTTTGCTTGCTTGGCTGG  448

seq1  TCTCTGCCTATGCCTGAACACTTCACCTGTGGCTTGTCATCTCATGCAAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTATGCCTGAACACTTCACCTGTGGCTTGTCATCTCATGCAAG  498

seq1  CTTCCTGATGTCTCTGGGCATCCACATCCCCTGTACCCATCTTCCCAATT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGATGTCTCTGGGCATCCACATCCCCTGTACCCATCTTCCCAATT  548

seq1  ATAAAACTCATGCCTCCTGCAATTATTGTGAACTATTTGAAGCACAGGCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTCATGCCTCCTGCAATTATTGTGAACTATTTGAAGCACAGGCC  598

seq1  CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  637
      ||||    ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTT----CTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT  644

seq1  TCCTTCCTTCCTTCCTTTCTTTCTTTCCTTCTTCCTTTCTTTCTTTTCTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTTCTTTCTTTCCTTCTTCCTTTCTTTCTTTTCTG  694

seq1  TAGCTTCAACAGCTGGCATGGTATCTGACACACAGGAGGTGATAATGTTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCAACAGCTGGCATGGTATCTGACACACAGGAGGTGATAATGTTA  744

seq1  AATTATGTGGCCGCTGTCATGATGTTAAAAGTATTCTTCCCAAGTGTGGC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTGGCCGCTGTCATGATGTTAAAAGTATTCTTCCCAAGTGTGGC  794

seq1  AAGCACTCTAAAGGGACATCTTTGTACACATCCCTTTAGCTACTCCCGGC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTAAAGGGACATCTTTGTACACATCCCTTTAGCTACTCCCGGC  844

seq1  TTTGTTTAATCCCATCTCTTATCCAACAAAACGTGGCAGCAGTGCCAGGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAATCCCATCTCTTATCCAACAAAACGTGGCAGCAGTGCCAGGC  894

seq1  TGCAGCATCTGAGATTCCACTACATTTCACACAGAAGACTCCAAGAGACG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATCTGAGATTCCACTACATTTCACACAGAAGACTCCAAGAGACG  944

seq1  CAGTGTCCTGCTGGCTCCAGAGCAGGAACTGCCTACAGAGAGAGAAGCAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTGCTGGCTCCAGAGCAGGAACTGCCTACAGAGAGAGAAGCAC  994

seq1  ATGGCAGGCTCTAGGTGGCCTCCAGGACTTGCAAGTGGCTTACAGCCAAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGCTCTAGGTGGCCTCCAGGACTTGCAAGTGGCTTACAGCCAAC  1044

seq1  ATCCGCCAAGAGGCTGGGGCTCCTTCCTCAGCCCCACAAGCAAAGGGAAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCCAAGAGGCTGGGGCTCCTTCCTCAGCCCCACAAGCAAAGGGAAG  1094

seq1  TGAATTC  1094
      |||||||
seq2  TGAATTC  1101

seq1: chr9_40734530_40735633
seq2: B6Ng01-165F18.g_66_1177

seq1  GAATTCCAAGAACGGATGTCCGTGCCTAGCTACCATTATCATGATGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGAACGGATGTCCGTGCCTAGCTACCATTATCATGATGTTAA  50

seq1  ACAGAAACCTGACTTGCTTAAAAGAAAAATCAACTCTGATGAGAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACCTGACTTGCTTAAAAGAAAAATCAACTCTGATGAGAAATGAA  100

seq1  GAGAAGGAAACATTCTAACTAGGGTGACTAAGCAGGCAAGGATACTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAACATTCTAACTAGGGTGACTAAGCAGGCAAGGATACTCTTT  150

seq1  TAATCTTGAAAAGGCTTAGCATGTCTTCTGGAGGGAACAGGAGAGATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTGAAAAGGCTTAGCATGTCTTCTGGAGGGAACAGGAGAGATGAC  200

seq1  CAATAGGAAGTAGATTCCCTAGCTTTTGCAAAGGCAAAGAGAAACATAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGAAGTAGATTCCCTAGCTTTTGCAAAGGCAAAGAGAAACATAAG  250

seq1  ATGTGTTTTAGGTTATGGGGATTATCATTGGTGACATTAATTTTCTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTAGGTTATGGGGATTATCATTGGTGACATTAATTTTCTATTG  300

seq1  ACAACTGTGATGGTTTGTATATGCTTGGGTCAGGGAGTGGCACTATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGATGGTTTGTATATGCTTGGGTCAGGGAGTGGCACTATTAGG  350

seq1  AGGCATGCCTTGTTGGAGTAGGTGTGTCACTGTGGGCATGGGCTTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCCTTGTTGGAGTAGGTGTGTCACTGTGGGCATGGGCTTTAATA  400

seq1  CCCTAGTCCTGACTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTCCTGACTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTAGATG  450

seq1  AAGACATAGAACTCTCACTTCCTCCTGCACCATGCCTGCCTGGATGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAGAACTCTCACTTCCTCCTGCACCATGCCTGCCTGGATGCTGC  500

seq1  CATGTTCCCTCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCCCTCCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGTCA  550

seq1  GCCCCAATTAAATGTTGTCCTTATAAGAGTTGCCTTGGTCATGGTGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAATTAAATGTTGTCCTTATAAGAGTTGCCTTGGTCATGGTGTCTG  600

seq1  TTCACAGCAGTAAAACCCTAACTAAGACAACAACCATGCTTGCATAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCAGTAAAACCCTAACTAAGACAACAACCATGCTTGCATAGTTC  650

seq1  TGTCAAAAACTTCACATATTGCTAATCAAGCATTGGCTGCTTCTTTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAACTTCACATATTGCTAATCAAGCATTGGCTGCTTCTTTTGCC  700

seq1  AGGGAGTGAAGGACACACAGTGCTTTTGTGCACAATATTTTGGTGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGAAGGACACACAGTGCTTTTGTGCACAATATTTTGGTGAAGCT  750

seq1  TGGCTGAATCACCCCAGAGAGCTCGCTGGGCAGGTAAAACATACTTCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATCACCCCAGAGAGCTCGCTGGGCAGGTAAAACATACTTCTAC  800

seq1  ATTAGCTCTTTGAAAGTGGAGTGGGACACAACCTCTGCCATCTATTTTTT  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTAGCTCTTTGAAAGTGGAGTGGGACACAACCTCTG-CATCTATTTTTT  849

seq1  TCTTTTTCTTTCTTTCTTTTTTTTTTTGTGAACCATTCTATTAATACCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTCTTTCTTTTTTTTTTTGTGAACCATTCTATTAATACCAA  899

seq1  TCAAATCGAGAAAATGATCAAATGAAATTGCATTTTGAGCATCGTAAGCT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAAATCGAGAAAATGATCAAATGAAATTGCATTTTGAGCATCGAAAGCT  949

seq1  GTGTAATGTCTATTCTGTTAAATTGGGGCCTATAATTGCTTCTGTACTGA  1000
      ||||||||||||||||||||| | ||||||||||||||||||||||||| 
seq2  GTGTAATGTCTATTCTGTTAATTGGGGGCCTATAATTGCTTCTGTACTG-  998

seq1  AAAGATACAACAAA-GACAGCAATCAT-GGCATG-TCATTATCCCA-GAC  1046
      |||||||||||||| |||||||||||| |||||| ||||||||||| |||
seq2  AAAGATACAACAAATGACAGCAATCATGGGCATGTTCATTATCCCAGGAC  1048

seq1  -TAGAAAACCGGCCTTTGCAGGGAGGA--CTTCAAAGGCTTGTGGTTCT-  1092
       ||||||||||||| ||||  |||| |  ||  |||| ||||||||||| 
seq2  TTAGAAAACCGGCCCTTGCCAGGAGAAACCTCTAAAGCCTTGTGGTTCTC  1098

seq1  --CAAATTGCATTT  1104
        ||||||||||||
seq2  TCCAAATTGCATTT  1112