BAC Information

Click to search

BAC

Clone NameB6Ng01-165O06
Chromosome9 (Build37)
Map Location 52,274,716 - 52,404,780
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165O06.bB6Ng01-165O06.g
ACCDH957826DH957827
length1,0311,110
definitionDH957826|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O06, 5' end.DH957827|Mus musculus domesticus DNA, BAC clone: B6Ng01-165O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,274,716 - 52,275,466)(52,403,675 - 52,404,780)
sequence
gaattctctttctttccctcttgccttttccatttcctgttctccgtcca
ctcttgccctgtctctcctttatttattcttctttctccaatctctcttc
tacccatacctctaccaggagcaagaaagtacctatatctggggagacac
ttatctctaaatcaactgcaacgaataatctcaacacaaacttacaaatt
aaacaggcttgaattcaaatcctgtggctgtctttgcattgacataagca
attgcaggcatcctctccttggctgggttctggcacgcagggcactctgt
ggccataattttgctaaataattaaacttccaacagtatggttcaaatat
cagccatcacatatattaactgtgaataattccataaagtacaactttta
cagccagatctgtagtccacaaatcaacagccaagtaacagatagacatt
atgatcagtgaccaagccaatctatcatgactttcaaagactactgtggt
tggtcatcatatgtgttgctcagttcaggcagagatagtgaagggtaata
ttgtgttgtcttctcatttcctgataataactctgaaagacatcttccaa
actagataattcagagagtgagttaaccatgaaaaaagtgagaccaatag
ggtgaaattctaacagttaataattgaaaattattgacagaagggtcagc
tctggagatgctgatgtttacatcattcaagagcgaatctagatgaactg
gaagacttcacgaaggtgaacttgtggaaaggaaatgaagaaaggggtca
tgatgtaaactatgatgtcccagaaagaacgaggtcatcattaaagggta
tcagagtgacattttgcaacattaaataagtaaaaagatgagacagtaga
agatcatggaaacacaaatgaagaaagactgttcccacagcacagaacta
tgtcataagctatgtgataagaaaactatcactgctcaaactactatcaa
taaccttttaaaagttcatttatttttattt
gaattcagtcattcacttactaactaggtgtggtgctgagtgacagatct
gacaaagaaatgggaatagacaagttctctgactttgaagtttaaaatac
agtggattcagagagagcaattgggaagccgttgtggtgctcagcaagct
tggtgggaacgagagaatacaacactgaagatgaggcagagagaagggga
tctaatggacattactgagtgtgtgtcatgaagagttgagagaattccat
gaaaatatcctttctaacatggactgcaggtgcatggtgacaactttgct
gatgtgggggtcattgtaaaagagcagatgaggcaggcaagaagctaaac
gagttccattttctcagtgtggaaactaatcactggctgtttgttttaat
cagctacatttgacaattgttttatgcaattgtttgaagaactgcacaca
tatgtgatgataaagatgaagcatttcaagtgttttctggtctgcaccac
tgcagttctaatgtggtttagtaatcccattctttatcttttctcatagg
tttctgatggtcaaggaagaagttccccctttccctcctagaagtgagga
aatgtttattcaaatgatatcacctatactggatttttaggccattgatt
aaattaagagtgttaacatttcacagtgttaaaggcaggggctgcatacc
ttggagagtcacatggtggtaatggtgtaaacttgccttagcatgctcat
gtgactttgaacatataccgatcatgtgaaaacatgtttaatccatgaca
tgtctgtatggttaattcatgggtcctaaggaaccttatgcatatgatat
ccccaaatctatgagtggaaatatatattgcacaatttcttgtcatatta
aaaattgagacatctatatattgggaaaggaaggaaagataatactatac
ctacaatagtgaatatgaacatataatttctacagtcatactatagacag
ttcttcatacccatgatcagtgaaaagaggaagcaagatgaacaagaaca
ttgagatttcatcccactcagtccaggtcacaccttggcaagacagaaca
tacttgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52274716_52275466
seq2: B6Ng01-165O06.b_48_798

seq1  GAATTCTCTTTCTTTCCCTCTTGCCTTTTCCATTTCCTGTTCTCCGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTTTCCCTCTTGCCTTTTCCATTTCCTGTTCTCCGTCCA  50

seq1  CTCTTGCCCTGTCTCTCCTTTATTTATTCTTCTTTCTCCAATCTCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCCTGTCTCTCCTTTATTTATTCTTCTTTCTCCAATCTCTCTTC  100

seq1  TACCCATACCTCTACCAGGAGCAAGAAAGTACCTATATCTGGGGAGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATACCTCTACCAGGAGCAAGAAAGTACCTATATCTGGGGAGACAC  150

seq1  TTATCTCTAAATCAACTGCAACGAATAATCTCAACACAAACTTACAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTAAATCAACTGCAACGAATAATCTCAACACAAACTTACAAATT  200

seq1  AAACAGGCTTGAATTCAAATCCTGTGGCTGTCTTTGCATTGACATAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTTGAATTCAAATCCTGTGGCTGTCTTTGCATTGACATAAGCA  250

seq1  ATTGCAGGCATCCTCTCCTTGGCTGGGTTCTGGCACGCAGGGCACTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGCATCCTCTCCTTGGCTGGGTTCTGGCACGCAGGGCACTCTGT  300

seq1  GGCCATAATTTTGCTAAATAATTAAACTTCCAACAGTATGGTTCAAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAATTTTGCTAAATAATTAAACTTCCAACAGTATGGTTCAAATAT  350

seq1  CAGCCATCACATATATTAACTGTGAATAATTCCATAAAGTACAACTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCACATATATTAACTGTGAATAATTCCATAAAGTACAACTTTTA  400

seq1  CAGCCAGATCTGTAGTCCACAAATCAACAGCCAAGTAACAGATAGACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGATCTGTAGTCCACAAATCAACAGCCAAGTAACAGATAGACATT  450

seq1  ATGATCAGTGACCAAGCCAATCTATCATGACTTTCAAAGACTACTGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCAGTGACCAAGCCAATCTATCATGACTTTCAAAGACTACTGTGGT  500

seq1  TGGTCATCATATGTGTTGCTCAGTTCAGGCAGAGATAGTGAAGGGTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCATATGTGTTGCTCAGTTCAGGCAGAGATAGTGAAGGGTAATA  550

seq1  TTGTGTTGTCTTCTCATTTCCTGATAATAACTCTGAAAGACATCTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTGTCTTCTCATTTCCTGATAATAACTCTGAAAGACATCTTCCAA  600

seq1  ACTAGATAATTCAGAGAGTGAGTTAACCATGAAAAAAGTGAGACCAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATAATTCAGAGAGTGAGTTAACCATGAAAAAAGTGAGACCAATAG  650

seq1  GGTGAAATTCTAACAGTTAATAATTGAAAATTATTGACAGAAGGGTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATTCTAACAGTTAATAATTGAAAATTATTGACAGAAGGGTCAGC  700

seq1  TCTGGAGATGCTGATGTTTACATCATTCAAGAGCGAATCTAGATGAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGATGCTGATGTTTACATCATTCAAGAGCGAATCTAGATGAACTG  750

seq1  G  751
      |
seq2  G  751

seq1: chr9_52403675_52404780
seq2: B6Ng01-165O06.g_67_1176 (reverse)

seq1  TAAAC-AGTATG-TCTGTCTTGCC-AGTTGTGA-CTTGACTGAGTGGGAT  46
      ||||| |||||| ||||||||||| || ||||| || |||||||||||||
seq2  TAAACAAGTATGTTCTGTCTTGCCAAGGTGTGACCTGGACTGAGTGGGAT  50

seq1  GACATCTC-ATGTTCTTGTTCATCTTGCTTCTCTC-TTTCACTGATCATG  94
      || ||||| |||||||||||||||||||||| ||| ||||||||||||||
seq2  GAAATCTCAATGTTCTTGTTCATCTTGCTTC-CTCTTTTCACTGATCATG  99

seq1  TGTATG-AGAACTGTCTATAGTATTGACTGTAGAAATTATATGTTCATAT  143
       ||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTATGAAGAACTGTCTATAGTA-TGACTGTAGAAATTATATGTTCATAT  148

seq1  TCACTATTGTAGGTATAGTATTATCTTTCCTTCCTTTCCCAATATATAGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATTGTAGGTATAGTATTATCTTTCCTTCCTTTCCCAATATATAGA  198

seq1  TGTCTCAATTTTTAAATATGACAAGAAATTGTGCAATATATATTTCCACT  243
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAATTTTT-AATATGACAAGAAATTGTGCAATATATATTTCCACT  247

seq1  CATAGATTTGGGGATATCATATGCATAAGGTTCCTTAGGACCCATGAATT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTTGGGGATATCATATGCATAAGGTTCCTTAGGACCCATGAATT  297

seq1  AACCATACAGACATGTCATGGATTAAACATGTTTTCACATGATCGGTATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACAGACATGTCATGGATTAAACATGTTTTCACATGATCGGTATA  347

seq1  TGTTCAAAGTCACATGAGCATGCTAAGGCAAGTTTACACCATTACCACCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAGTCACATGAGCATGCTAAGGCAAGTTTACACCATTACCACCA  397

seq1  TGTGACTCTCCAAGGTATGCAGCCCCTGCCTTTAACACTGTGAAATGTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTCCAAGGTATGCAGCCCCTGCCTTTAACACTGTGAAATGTTA  447

seq1  ACACTCTTAATTTAATCAATGGCCTAAAAATCCAGTATAGGTGATATCAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTTAATTTAATCAATGGCCTAAAAATCCAGTATAGGTGATATCAT  497

seq1  TTGAATAAACATTTCCTCACTTCTAGGAGGGAAAGGGGGAACTTCTTCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAACATTTCCTCACTTCTAGGAGGGAAAGGGGGAACTTCTTCCT  547

seq1  TGACCATCAGAAACCTATGAGAAAAGATAAAGAATGGGATTACTAAACCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCAGAAACCTATGAGAAAAGATAAAGAATGGGATTACTAAACCA  597

seq1  CATTAGAACTGCAGTGGTGCAGACCAGAAAACACTTGAAATGCTTCATCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAACTGCAGTGGTGCAGACCAGAAAACACTTGAAATGCTTCATCT  647

seq1  TTATCATCACATATGTGTGCAGTTCTTCAAACAATTGCATAAAACAATTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCACATATGTGTGCAGTTCTTCAAACAATTGCATAAAACAATTG  697

seq1  TCAAATGTAGCTGATTAAAACAAACAGCCAGTGATTAGTTTCCACACTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTAGCTGATTAAAACAAACAGCCAGTGATTAGTTTCCACACTGA  747

seq1  GAAAATGGAACTCGTTTAGCTTCTTGCCTGCCTCATCTGCTCTTTTACAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGAACTCGTTTAGCTTCTTGCCTGCCTCATCTGCTCTTTTACAA  797

seq1  TGACCCCCACATCAGCAAAGTTGTCACCATGCACCTGCAGTCCATGTTAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCCACATCAGCAAAGTTGTCACCATGCACCTGCAGTCCATGTTAG  847

seq1  AAAGGATATTTTCATGGAATTCTCTCAACTCTTCATGACACACACTCAGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATATTTTCATGGAATTCTCTCAACTCTTCATGACACACACTCAGT  897

seq1  AATGTCCATTAGATCCCCTTCTCTCTGCCTCATCTTCAGTGTTGTATTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCATTAGATCCCCTTCTCTCTGCCTCATCTTCAGTGTTGTATTCT  947

seq1  CTCGTTCCCACCAAGCTTGCTGAGCACCACAACGGCTTCCCAATTGCTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCCCACCAAGCTTGCTGAGCACCACAACGGCTTCCCAATTGCTCT  997

seq1  CTCTGAATCCACTGTATTTTAAACTTCAAAGTCAGAGAACTTGTCTATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATCCACTGTATTTTAAACTTCAAAGTCAGAGAACTTGTCTATTC  1047

seq1  CCATTTCTTTGTCAGATCTGTCACTCAGCACCACACCTAGTTAGTAAGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTTGTCAGATCTGTCACTCAGCACCACACCTAGTTAGTAAGTG  1097

seq1  AATGACTGAATTC  1106
      |||||||||||||
seq2  AATGACTGAATTC  1110