BAC Information

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BAC

Clone NameB6Ng01-167H22
Chromosome9 (Build37)
Map Location 87,507,983 - 87,704,154
singlet/doubletdoublet
Overlap geneTbx18, LOC671731
Upstream geneMod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167H22.bB6Ng01-167H22.g
ACCDH958976DH958977
length1,1531,117
definitionDH958976|Mus musculus domesticus DNA, BAC clone: B6Ng01-167H22, 5' end.DH958977|Mus musculus domesticus DNA, BAC clone: B6Ng01-167H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,702,998 - 87,704,154)(87,507,983 - 87,509,128)
sequence
gaattctcaaagtcaatacctagactacttgctctgagaacaaaagaagg
gccatttggtgaaagccagccagtgcagtggaggatcaaagtcagcctag
ctcagtgtgataaagattctgtgtccccaaacctttgggttcatagattt
agaggcccagttcttctaacttgaaagtggcctgccaaagacccaatcaa
ggtgcttttcgtggaaccaaagttctcaaattaaaatgcttccaaatcac
tcactgtgatttaagaaaaaaaataagaaaatctgttgccttaaacaaat
ttatgaataagttttgccagcacctgcttgttgctggcctgaagaatcaa
atctccagggttctggaacccccactaacgagtctccagactcacagaaa
agccctgaatggaacctgtggattggataagtgccaaaatcccaccaagt
gaagtggcaagcagaagtctgatgggttcacctacttagagaacagcttc
ttgataggagagagcttggtgcaggagacagagagttgaccaaggaacta
aagacctgctctgtttaaacctcaactcagctcccaagctctgattgctg
cttcatttctgtctataaaatagaaatatagtcttacagagtcattacag
caaatcagtgtgatgagatgtgtgaattccttgtgatggtggttggcaca
ggggagcctagtcaatggtaggtgtgattaataataaaggcacatcaaaa
cattgtctcaggcagtgccttttttgctatgggatgaaagcaaacactga
agagcaatcttatgcagtgtgctagtgatgtaacaataaacgcagtgtgg
ctagatttaagtaaagacattaatcctcagaggagagcagagagccccaa
accaaagaactatcttcagctgtggagatactggctcacacagataggac
cagcaactgaaaggcagacttttctgaaactgtgcaaactgtttggttta
acaagtcacccttctatgagacctgggaatcaatatcatgcatggttgag
tcattgtgctagtattattctgtactagcaggatggggtaaaatgttttc
taaggtttactcaagtcaattccaggtaagaattacccccaatacttcaa
tcg
gaattcttctgcattctatctatctcaatagacaagtggagtcagagtcc
taagagctgacagcttcctctatagatacattccagcctgctccaaacag
attcagcattcatgaaaccagagaactagcagagggctctgagactgcct
tgtccagtggttcccacacggtccatcagccaagattcctttaacacctc
ctttgtatctcatccataagccatgaattgggattttttttcaactgaat
tgaatgtgttaaatataatgaactatacttgctagtgtttttcatcaaca
acaaatatatgcatgtagtctaagcatgatccttatcccacatggacttg
aaaataattttcaattctaagctagaaaatttggaattattcattataat
cttattttaaaaagttttggaattgcttttagaacctcaatattgtttca
taagtctgtgtaactccaattcaagaaaactcagtaagagaatatttgct
caaagttgagatcaattattcactcaagtcttgataacaggaccaattct
ataccagagagtgagagcaggcatatttaacaaatgttcaggagttaaag
agttagatttaacaagtctcgtatgacactgtgaagaggaatgaaggccc
agaagtatgagaaagcctggacttggctatgaactttcctggagagtgtg
tcagattggaattcagctgacagagactaatgaagaggtgagaaatattc
agggtgagtgttcatgtcttgacagaggaggaggaaacttaaaggaaaca
aattacatcagtttaggctaacaggatagagataagagaagcaaaagagc
caaggagataaagtaaagcccacggggttaaagagtattaggagggcaat
ctatcagacgggaaggatgatgagaaggaatcggagtttctacaaaggag
gggcatacaagtaaaactccaaatttattttgtgaaaactcttctttagt
cagctttctagaataattctaaacaaagagagaggagagaaaaaagagga
gattgaaatgatttgcagaactgaaagcttaggaaaccactactgacaga
gaggaaaagagttttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_87702998_87704154
seq2: B6Ng01-167H22.b_45_1197 (reverse)

seq1  CGATGGAAGTATTTGGGGGTAAATTCTTTACTGGAATTGACTTGAGTAAA  50
      |||| |||||| |||||||| |||||||  ||||||||||||||||||||
seq2  CGATTGAAGTA-TTGGGGGT-AATTCTTACCTGGAATTGACTTGAGTAAA  48

seq1  CTTTAG-AAACATTTTACCCCATCCTGCTAGTACAGAATAATACTAGCAC  99
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAAACATTTTACCCCATCCTGCTAGTACAGAATAATACTAGCAC  98

seq1  AATGAACTCAAAACCATGCATGATATTGATTCCCAGGTCTCATAGAAGGG  149
      |||| ||||  |||||||||||||||||||||||||||||||||||||||
seq2  AATG-ACTC--AACCATGCATGATATTGATTCCCAGGTCTCATAGAAGGG  145

seq1  TGACTTGTTAAACCAAACAGTTTGCACAGTTTCAGAAAAGTCTGCCTTTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTTAAACCAAACAGTTTGCACAGTTTCAGAAAAGTCTGCCTTTC  195

seq1  AGTTGCTGGTCCTATCTGTGTGAGCCAGTATCTCCACAGCTGAAGATAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTGGTCCTATCTGTGTGAGCCAGTATCTCCACAGCTGAAGATAGT  245

seq1  TCTTTGGTTTGGGGCTCTCTGCTCTCCTCTGAGGATTAATGTCTTTACTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTTTGGGGCTCTCTGCTCTCCTCTGAGGATTAATGTCTTTACTT  295

seq1  AAATCTAGCCACACTGCGTTTATTGTTACATCACTAGCACACTGCATAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAGCCACACTGCGTTTATTGTTACATCACTAGCACACTGCATAAG  345

seq1  ATTGCTCTTCAGTGTTTGCTTTCATCCCATAGCAAAAAAGGCACTGCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCTTCAGTGTTTGCTTTCATCCCATAGCAAAAAAGGCACTGCCTG  395

seq1  AGACAATGTTTTGATGTGCCTTTATTATTAATCACACCTACCATTGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGTTTTGATGTGCCTTTATTATTAATCACACCTACCATTGACTA  445

seq1  GGCTCCCCTGTGCCAACCACCATCACAAGGAATTCACACATCTCATCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCTGTGCCAACCACCATCACAAGGAATTCACACATCTCATCACA  495

seq1  CTGATTTGCTGTAATGACTCTGTAAGACTATATTTCTATTTTATAGACAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGCTGTAATGACTCTGTAAGACTATATTTCTATTTTATAGACAG  545

seq1  AAATGAAGCAGCAATCAGAGCTTGGGAGCTGAGTTGAGGTTTAAACAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGCAGCAATCAGAGCTTGGGAGCTGAGTTGAGGTTTAAACAGAG  595

seq1  CAGGTCTTTAGTTCCTTGGTCAACTCTCTGTCTCCTGCACCAAGCTCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTAGTTCCTTGGTCAACTCTCTGTCTCCTGCACCAAGCTCTCT  645

seq1  CCTATCAAGAAGCTGTTCTCTAAGTAGGTGAACCCATCAGACTTCTGCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAAGAAGCTGTTCTCTAAGTAGGTGAACCCATCAGACTTCTGCTT  695

seq1  GCCACTTCACTTGGTGGGATTTTGGCACTTATCCAATCCACAGGTTCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCACTTGGTGGGATTTTGGCACTTATCCAATCCACAGGTTCCAT  745

seq1  TCAGGGCTTTTCTGTGAGTCTGGAGACTCGTTAGTGGGGGTTCCAGAACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTTTTCTGTGAGTCTGGAGACTCGTTAGTGGGGGTTCCAGAACC  795

seq1  CTGGAGATTTGATTCTTCAGGCCAGCAACAAGCAGGTGCTGGCAAAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATTTGATTCTTCAGGCCAGCAACAAGCAGGTGCTGGCAAAACTT  845

seq1  ATTCATAAATTTGTTTAAGGCAACAGATTTTCTTATTTTTTTTCTTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAATTTGTTTAAGGCAACAGATTTTCTTATTTTTTTTCTTAAAT  895

seq1  CACAGTGAGTGATTTGGAAGCATTTTAATTTGAGAACTTTGGTTCCACGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGAGTGATTTGGAAGCATTTTAATTTGAGAACTTTGGTTCCACGA  945

seq1  AAAGCACCTTGATTGGGTCTTTGGCAGGCCACTTTCAAGTTAGAAGAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCTTGATTGGGTCTTTGGCAGGCCACTTTCAAGTTAGAAGAACT  995

seq1  GGGCCTCTAAATCTATGAACCCAAAGGTTTGGGGACACAGAATCTTTATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCTAAATCTATGAACCCAAAGGTTTGGGGACACAGAATCTTTATC  1045

seq1  ACACTGAGCTAGGCTGACTTTGATCCTCCACTGCACTGGCTGGCTTTCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGCTAGGCTGACTTTGATCCTCCACTGCACTGGCTGGCTTTCAC  1095

seq1  CAAATGGCCCTTCTTTTGTTCTCAGAGCAAGTAGTCTAGGTATTGACTTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCCTTCTTTTGTTCTCAGAGCAAGTAGTCTAGGTATTGACTTT  1145

seq1  GAGAATTC  1157
      ||||||||
seq2  GAGAATTC  1153

seq1: chr9_87507983_87509128
seq2: B6Ng01-167H22.g_65_1181

seq1  GAATTCTTCTGCATTCTATCTATCTCAATAGACAAGTGGAGTCAGAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGCATTCTATCTATCTCAATAGACAAGTGGAGTCAGAGTCC  50

seq1  TAAGAGCTGACAGCTTCCTCTATAGATACATTCCAGCCTGCTCCAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTGACAGCTTCCTCTATAGATACATTCCAGCCTGCTCCAAACAG  100

seq1  ATTCAGCATTCATGAAACCAGAGAACTAGCAGAGGGCTCTGAGACTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCATTCATGAAACCAGAGAACTAGCAGAGGGCTCTGAGACTGCCT  150

seq1  TGTCCAGTGGTTCCCACACGGTCCATCAGCCAAGATTCCTTTAACACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGTGGTTCCCACACGGTCCATCAGCCAAGATTCCTTTAACACCTC  200

seq1  CTTTGTATCTCATCCATAAGCCATGAATTGGGATTTTTTTTCAACTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTATCTCATCCATAAGCCATGAATTGGGATTTTTTTTCAACTGAAT  250

seq1  TGAATGTGTTAAATATAATGAACTATACTTGCTAGTGTTTTTCATCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGTTAAATATAATGAACTATACTTGCTAGTGTTTTTCATCAACA  300

seq1  ACAAATATATGCATGTAGTCTAAGCATGATCCTTATCCCACATGGACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATATGCATGTAGTCTAAGCATGATCCTTATCCCACATGGACTTG  350

seq1  AAAATAATTTTCAATTCTAAGCTAGAAAATTTGGAATTATTCATTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTTCAATTCTAAGCTAGAAAATTTGGAATTATTCATTATAAT  400

seq1  CTTATTTTAAAAAGTTTTGGAATTGCTTTTAGAACCTCAATATTGTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTAAAAAGTTTTGGAATTGCTTTTAGAACCTCAATATTGTTTCA  450

seq1  TAAGTCTGTGTAACTCCAATTCAAGAAAACTCAGTAAGAGAATATTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGTGTAACTCCAATTCAAGAAAACTCAGTAAGAGAATATTTGCT  500

seq1  CAAAGTTGAGATCAATTATTCACTCAAGTCTTGATAACAGGACCAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGAGATCAATTATTCACTCAAGTCTTGATAACAGGACCAATTCT  550

seq1  ATACCAGAGAGTGAGAGCAGGCATATTTAACAAATGTTCAGGAGTTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAGAGTGAGAGCAGGCATATTTAACAAATGTTCAGGAGTTAAAG  600

seq1  AGTTAGATTTAACAAGTCTCGTATGACACTGTGAAGAGGAATGAAGGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGATTTAACAAGTCTCGTATGACACTGTGAAGAGGAATGAAGGCCC  650

seq1  AGAAGTATGAGAAAGCCTGGACTTGGCTATGAACTTTCCTGGAGAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTATGAGAAAGCCTGGACTTGGCTATGAACTTTCCTGGAGAGTGTG  700

seq1  TCAGATTGGAATTCAGCTGACAGAGACTAATGAAGAGGTGAGAAATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGGAATTCAGCTGACAGAGACTAATGAAGAGGTGAGAAATATTC  750

seq1  AGGGTGAGTGTTCATGTCTTGACAGAGGAGGAGGAAACTTAAGGAAAACA  800
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  AGGGTGAGTGTTCATGTCTTGACAGAGGAGGAGGAAACTTAAAGGAAACA  800

seq1  AATTACATCAGTTAAGGCTAACAGGATAGAGATAAGAGAAGCAAAAGAGC  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTACATCAGTTTAGGCTAACAGGATAGAGATAAGAGAAGCAAAAGAGC  850

seq1  CAAGGAGATAAAGTAAAGCCCACGGGGTTAAAGAGTATTAGGAGGGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGGAGATAAAGTAAAGCCCACGGGGTTAAAGAGTATTAGGAGGGC-AA  899

seq1  TCTATCAGGACGGGAAGGGATGATGAGAAGGAAATCGGAGTTTCTAACAA  950
      ||||||| |||||||| |||||||||||||| ||||||||||||| ||||
seq2  TCTATCA-GACGGGAA-GGATGATGAGAAGG-AATCGGAGTTTCT-ACAA  945

seq1  AGGAGGGGCATACAAGTAAAAACTCCAAATTTATTATGTGAAAAACTCCT  1000
      ||||||||||||||||| ||||||||||||||||| |||| |||||| ||
seq2  AGGAGGGGCATACAAGT-AAAACTCCAAATTTATTTTGTG-AAAACT-CT  992

seq1  TCCTTTAAGTCAGGCTTCCTAGGAAATAAATCTAAAAACAAAAGAGAGAG  1050
      ||  || ||||| |||| ||||  ||||| |||  ||||||   ||||||
seq2  TC--TTTAGTCA-GCTTTCTAG--AATAATTCT--AAACAA---AGAGAG  1032

seq1  AGGAAGAAAAAAAGAGGGAAGATAGGAAAATGAATTTGCAAGAACTGAAA  1100
      ||||   ||||||||||  |||| |  ||||| |||||| ||||||||||
seq2  AGGAGAGAAAAAAGAGG--AGATTG--AAATG-ATTTGC-AGAACTGAAA  1076

seq1  GGCTTAGGAAAACCACTACTGACAAGAGAGAGAAAAAGAGTTTTCC  1146
       ||||||| ||||||||||||||   |||||| |||||||||||||
seq2  -GCTTAGG-AAACCACTACTGAC---AGAGAGGAAAAGAGTTTTCC  1117