BAC Information

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BAC

Clone NameB6Ng01-168C08
Chromosome9 (Build37)
Map Location 98,437,472 - 98,541,728
singlet/doubletdoublet
Overlap gene4930579K19Rik, Copb2, Mrps22
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1, Rbp2
Downstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168C08.bB6Ng01-168C08.g
ACCDH959463DH959464
length1,0861,093
definitionDH959463|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C08, 5' end.DH959464|Mus musculus domesticus DNA, BAC clone: B6Ng01-168C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,540,632 - 98,541,728)(98,437,472 - 98,438,582)
sequence
gaattccctgttaacaaagcagaaatgagttcagtggttcagaggtgatt
gggcaacacagaccaatcaccttaaaatgtctacccaataatgccacttc
tgggaatctatctctaagcgttcctttgaaatgcgagctgagcttttcct
agcctgacttgcaaatactgcccatcagacaaacaaacctgcacaagctg
acatccaccctccttagcccacgtagggaaggcgggcttataatgataat
gactgaacagagaatccaacaccctgagaaagacctcgctgataatgtta
aggcacattcccaatggggcatgtgaggggatgggcacagatcctcagaa
tcagaaatactttaggatctcacgaatgtaaggaaattaactgggaggag
gccatggaaggttgaaggcaacatgccgcagcgtaggtggcctctttctg
cagcctttggtgattgtaaagcccacagggactgcactcctcagtgtagc
tggagaaaacagccagccataacaatgagtggtgggaaatgatccctggc
tggagcctcaggagatggcaagggcagggccagctccctcaggactcagg
caagggaggccttggggagtgtcaggtgcccgtgcctgtgcccatgtaac
atgggatggggggctagagctctatggttttgctggtgctctctggagga
acagtgtgtgtgcacgcttggaggtgtgtgggggggcactctatggtatt
tctgggatgtttctgcatgcaaccggcagagcccaccttgccctttgctt
tggcaagttcagcattcagtttcctagttggccgttggaagaaaatcacc
tcaccaagagggccaactagatagcagagtttgtgtttgctcaggcttcc
tctcctgccctttgcgagcagaacagcactgtaacctggcatgcttaacg
aagtcctgagggcttttgaaagggcagaggagcagagtccacacaccaga
gcagatcagtctgagtccctgtcatgcacaaaggcctgggacgagtgaga
tcgatgccaagttcttgactggtcagaaactgagct
gaattcccatccaacccagcacctccatcaaatagtaaacaaacatccaa
taaacttcagcttacagttattcagcagtgaaattgactgatggtcttta
aaagtgccaaagccaagaaaggactgacagattggctcagagagggagcc
gccgaggagtcatggaggctgaagtagcagaagagcatgctaaggagaac
tgttgaaattcagatgagggcagtcgtgtagttaaaagtattaatagcat
taacagtagcattgacattctggtcaccatgctatggctgtgatgggtat
tacattagcgttcagggaagctgtgggtttatgaatatcaattaacatgg
attaatattaattagcaatttattaatattcattaacttttctgtgttca
aaaaaaataaaaaataaaaacttaaaaaaaaccacagccctagatgtaag
tgaagttgaagctgaaggcttgggggcaggggatacagctaggcctcacc
tgtcttcagcacctcctcgctctagtctgccaaaatgtctgaataccatt
caagacacatcacctttttagaattttcagttcttttaaattttcataaa
aataagcattgcatgttagccatgctcccccaatcccaccccttgcccct
ttcccaatatgcatttcttctaactaagcttttgggtacataaaggtcca
atgagtcttgcctcagatatttatggaggagcactgtctatatttgggct
aggatgaggcagacaagacctctgtctccctggaggtcagatttagccat
ccgtgtcttaatataatgataaagactagtttcttagttaaatcaaggta
ctaaggaaaagaaattcacaactccatttgagaaggcagtctacagagag
cttctagaagtccataaagcatggctctgaagctcacaggaggaggcact
agaccaactagagaggcatatgtatgtggtgagctgactggaaacgcagc
agacagcatccagaggcctgttgtgcggcagtcctccacatgagaggtga
tggaggacttgaggtgttcagtttagcaacacttctaggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_98540632_98541728
seq2: B6Ng01-168C08.b_48_1133 (reverse)

seq1  AGCTCAGTATCTGGACCCAGTCAAGGACCTTGGCCATCGATCTTCCACTC  50
      |||||||| ||||   |||||||| || ||||| |||||||||  |||||
seq2  AGCTCAGTTTCTG--ACCAGTCAA-GAACTTGG-CATCGATCT--CACTC  44

seq1  GTCCCAAGCCTTTGTGCATGAACAGGGACCTCAGACTGGATCTGCTCTGG  100
      |||||| ||||||||||||| ||||||| |||||||| ||||||||||||
seq2  GTCCCAGGCCTTTGTGCATG-ACAGGGA-CTCAGACT-GATCTGCTCTGG  91

seq1  TGTGTGGGCTCTGCTTCCTCCTGCCCTTTCAAAAGCCCTCAGGACTTCCT  150
      ||||||| |||||| |||| |||||||||||||||||||||||||||| |
seq2  TGTGTGGACTCTGC-TCCT-CTGCCCTTTCAAAAGCCCTCAGGACTTCGT  139

seq1  TAAGCATGCCAGGTTACAGTGCTGTTCTGCTCGCAAAGGGCAGGAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGCCAGGTTACAGTGCTGTTCTGCTCGCAAAGGGCAGGAGAGGA  189

seq1  AGCCTGAGCAAACACAAACTCTGCTATCTAGTTGGCCCTCTTGGTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGCAAACACAAACTCTGCTATCTAGTTGGCCCTCTTGGTGAGGT  239

seq1  GATTTTCTTCCAACGGCCAACTAGGAAACTGAATGCTGAACTTGCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTTCCAACGGCCAACTAGGAAACTGAATGCTGAACTTGCCAAAG  289

seq1  CAAAGGGCAAGGTGGGCTCTGCCGGTTGCATGCAGAAACATCCCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCAAGGTGGGCTCTGCCGGTTGCATGCAGAAACATCCCAGAAAT  339

seq1  ACCATAGAGTGCCCCCCCACACACCTCCAAGCGTGCACACACACTGTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGAGTGCCCCCCCACACACCTCCAAGCGTGCACACACACTGTTCC  389

seq1  TCCAGAGAGCACCAGCAAAACCATAGAGCTCTAGCCCCCCATCCCATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAGCACCAGCAAAACCATAGAGCTCTAGCCCCCCATCCCATGTT  439

seq1  ACATGGGCACAGGCACGGGCACCTGACACTCCCCAAGGCCTCCCTTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGCACAGGCACGGGCACCTGACACTCCCCAAGGCCTCCCTTGCCT  489

seq1  GAGTCCTGAGGGAGCTGGCCCTGCCCTTGCCATCTCCTGAGGCTCCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTGAGGGAGCTGGCCCTGCCCTTGCCATCTCCTGAGGCTCCAGCC  539

seq1  AGGGATCATTTCCCACCACTCATTGTTATGGCTGGCTGTTTTCTCCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCATTTCCCACCACTCATTGTTATGGCTGGCTGTTTTCTCCAGCT  589

seq1  ACACTGAGGAGTGCAGTCCCTGTGGGCTTTACAATCACCAAAGGCTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGGAGTGCAGTCCCTGTGGGCTTTACAATCACCAAAGGCTGCAG  639

seq1  AAAGAGGCCACCTACGCTGCGGCATGTTGCCTTCAACCTTCCATGGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCCACCTACGCTGCGGCATGTTGCCTTCAACCTTCCATGGCCTC  689

seq1  CTCCCAGTTAATTTCCTTACATTCGTGAGATCCTAAAGTATTTCTGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTTAATTTCCTTACATTCGTGAGATCCTAAAGTATTTCTGATTC  739

seq1  TGAGGATCTGTGCCCATCCCCTCACATGCCCCATTGGGAATGTGCCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCTGTGCCCATCCCCTCACATGCCCCATTGGGAATGTGCCTTAA  789

seq1  CATTATCAGCGAGGTCTTTCTCAGGGTGTTGGATTCTCTGTTCAGTCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCAGCGAGGTCTTTCTCAGGGTGTTGGATTCTCTGTTCAGTCATT  839

seq1  ATCATTATAAGCCCGCCTTCCCTACGTGGGCTAAGGAGGGTGGATGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTATAAGCCCGCCTTCCCTACGTGGGCTAAGGAGGGTGGATGTCAG  889

seq1  CTTGTGCAGGTTTGTTTGTCTGATGGGCAGTATTTGCAAGTCAGGCTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCAGGTTTGTTTGTCTGATGGGCAGTATTTGCAAGTCAGGCTAGG  939

seq1  AAAAGCTCAGCTCGCATTTCAAAGGAACGCTTAGAGATAGATTCCCAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCAGCTCGCATTTCAAAGGAACGCTTAGAGATAGATTCCCAGAA  989

seq1  GTGGCATTATTGGGTAGACATTTTAAGGTGATTGGTCTGTGTTGCCCAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTATTGGGTAGACATTTTAAGGTGATTGGTCTGTGTTGCCCAAT  1039

seq1  CACCTCTGAACCACTGAACTCATTTCTGCTTTGTTAACAGGGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGAACCACTGAACTCATTTCTGCTTTGTTAACAGGGAATTC  1086

seq1: chr9_98437472_98438582
seq2: B6Ng01-168C08.g_67_1159

seq1  GAATTCCCATCCAACCCAGCACCTCCATCAAATAGTAAACAAACATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCCAACCCAGCACCTCCATCAAATAGTAAACAAACATCCAA  50

seq1  TAAACTTCAGCTTACAGTTATTCAGCAGTGAAATTGACTGATGGTCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCAGCTTACAGTTATTCAGCAGTGAAATTGACTGATGGTCTTTA  100

seq1  AAAGTGCCAAAGCCAAGAAAGGACTGACAGATTGGCTCAGAGAGGGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCAAAGCCAAGAAAGGACTGACAGATTGGCTCAGAGAGGGAGCC  150

seq1  GCCGAGGAGTCATGGAGGCTGAAGTAGCAGAAGAGCATGCTAAGGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGGAGTCATGGAGGCTGAAGTAGCAGAAGAGCATGCTAAGGAGAAC  200

seq1  TGTTGAAATTCAGATGAGGGCAGTCGTGTAGTTAAAAGTATTAATAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAATTCAGATGAGGGCAGTCGTGTAGTTAAAAGTATTAATAGCAT  250

seq1  TAACAGTAGCATTGACATTCTGGTCACCATGCTATGGCTGTGATGGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTAGCATTGACATTCTGGTCACCATGCTATGGCTGTGATGGGTAT  300

seq1  TACATTAGCGTTCAGGGAAGCTGTGGGTTTATGAATATCAATTAACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGCGTTCAGGGAAGCTGTGGGTTTATGAATATCAATTAACATGG  350

seq1  ATTAATATTAATTAGCAATTTATTAATATTCATTAACTTTTCTGTGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTAATTAGCAATTTATTAATATTCATTAACTTTTCTGTGTTCA  400

seq1  AAAAAAATAAAAAATAAAAACTTAAAAAAAACCACAGCCCTAGATGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAAAAAATAAAAACTTAAAAAAAACCACAGCCCTAGATGTAAG  450

seq1  TGAAGTTGAAGCTGAAGGCTTGGGGGCAGGGGATACAGCTAGGCCTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTGAAGCTGAAGGCTTGGGGGCAGGGGATACAGCTAGGCCTCACC  500

seq1  TGTCTTCAGCACCTCCTCGCTCTAGTCTGCCAAAATGTCTGAATACCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGCACCTCCTCGCTCTAGTCTGCCAAAATGTCTGAATACCATT  550

seq1  CAAGACACATCACCTTTTTAGAATTTTCAGTTCTTTTAAATTTTCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACATCACCTTTTTAGAATTTTCAGTTCTTTTAAATTTTCATAAA  600

seq1  AATAAGCATTGCATGTTAGCCATGCTCCCCCAATCCCACCCCTTGCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCATTGCATGTTAGCCATGCTCCCCCAATCCCACCCCTTGCCCCT  650

seq1  TTCCCAATATGCATTTCTTCTAACTAAGCTTTTGGGTACATAAAGGTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAATATGCATTTCTTCTAACTAAGCTTTTGGGTACATAAAGGTCCA  700

seq1  ATGAGTCTTGCCTCAGATATTTATGGAGGAGCACTGTCTATATTTGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCTTGCCTCAGATATTTATGGAGGAGCACTGTCTATATTTGGGCT  750

seq1  AGGATGAGGCAGACAAGACCTCTGTCTCCCTGGAGGTCAGAATTAGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGATGAGGCAGACAAGACCTCTGTCTCCCTGGAGGTCAGATTTAGCCAT  800

seq1  CCGTGTCTTAATATAATGATAAAGACTAGTTTCTTAGTTAAATCAAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCTTAATATAATGATAAAGACTAGTTTCTTAGTTAAATCAAGGTA  850

seq1  CTAAGGAAAAGAAAATTCACAACTCCATTTGAGAAAGGGCAGTCTACAGA  900
      ||||||||||| |||||||||||||||||||||||  |||||||||||||
seq2  CTAAGGAAAAG-AAATTCACAACTCCATTTGAGAA--GGCAGTCTACAGA  897

seq1  GAAGCTTCTAGAAGTCCATAAAGCATGGCTCTGAAGCCAACAGGAGGAGG  950
      | |||||||||||||||||||||||||||||||||||  |||||||||||
seq2  G-AGCTTCTAGAAGTCCATAAAGCATGGCTCTGAAGCTCACAGGAGGAGG  946

seq1  CACTAGACCAACTAAGAGAGGCAATATGTATGTGGTTGAGCTGAACTGGA  1000
      ||||||||||||| |||||||| |||||||||||| ||||||| ||||||
seq2  CACTAGACCAACT-AGAGAGGC-ATATGTATGTGG-TGAGCTG-ACTGGA  992

seq1  AACGCAGCAGACAGCATCCAGAAGGCCCTGTTTGTGCGGCAGGTCCTCCC  1050
      ||||||||||||||||||||||  | |||| |||||||||| ||||||| 
seq2  AACGCAGCAGACAGCATCCAGA--GGCCTG-TTGTGCGGCA-GTCCTCC-  1037

seq1  AAACATGAGAGGTGATGGAGGAACCTGAGGTGTCCAGTTTAAGCAACACT  1100
        ||||||||||||||||||| || |||||||| |||||| |||||||||
seq2  --ACATGAGAGGTGATGGAGG-ACTTGAGGTGTTCAGTTT-AGCAACACT  1083

seq1  CCTAAGGCTGA  1111
       || |||||||
seq2  TCT-AGGCTGA  1093