BAC Information

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BAC

Clone NameB6Ng01-170K06
Chromosome9 (Build37)
Map Location 108,105,755 - 108,259,910
singlet/doubletdoublet
Overlap geneDag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108
Downstream geneLOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170K06.bB6Ng01-170K06.g
ACCDH961301DH961302
length1,0351,172
definitionDH961301|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K06, 5' end.DH961302|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,258,852 - 108,259,910)(108,105,755 - 108,106,941)
sequence
gaattcaaatcccagcaaccacatggtggctcacaaccatccataatgag
atctgccgccctcttctggagtgcctgaagacaacaacagtgtactttaa
taaataaataaatctaaaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa
gaaaagaaaaaaaaaaaaaaaaaaaaaagatgttaggtaaggatggtggc
tcgcactacttatctcaacatcctggagcctaaatgaaaaggctcagaat
ggtcagagttctaggcctacttgagctataattgagttcaaatttggcct
ggttaactcaatacaacaccatctcaaagaaaaaaaaaaaagggctggat
atgactcagtgctaggacactaaacgagtcatgtattctattcggcccta
ggctcactcccagccctggggaaaaggaaacggtgcaaggcgcagtgcat
tgcattatgtccactccgcccaactgaagagatgggttcggagtactatg
ggcattgcaaaccaacaggcagctcttgtatttggaggccacgtcggaac
atactgagttgcttacaactacttcatatcccagagagaagtaaaatagt
cattcaggccaagattccagcataccatacgcaagagatgacatgaacaa
gaccagaccgggatacactgagatcctgtctcgtgaaacgtaaactaagt
ctaaagcctggcacgtctcttatctcagctcttagggatcgctgagtttg
tgctggttgggctacatagcatagttcagaactacttactttatgggata
gtcaacacaaacctgtcttgaatacaaaaacaaacaaactcaatcacata
acatagctcgctgcctgctttcaatctatgcaacggattcatctcccggc
aatgaagagaagtcagtgtacctacgagagtgactaccacctagctgtct
gcacttgctagtcacttttctgacataagctgctg
gaattcagatcctctgcttttctctctacctctcttgagggccgactctt
gactataatccattatctcaactccatgccccagttcactgggtatcttg
gagccccttggagacagcactgtcctaacctcaataacagactggagagc
cttgctggagggatcccaggaagtagccctgcgtcaaatcaagtagaaaa
acaggttcctcttagtacccttctgcctgccccctgccctcctatcacct
tctgttcataggcagactcacttccaccaagacaagatcataggaacttg
gcctgagggctggggagcaggccatctaccaggctcaacagcaactcacc
tcctgcaaagaagacaggaagcagctggagccccgtgcagcctgtagctt
ctcgatcatcctcagtttcatcttaagctgagctttctgagggtcagctt
aactgagagcaattgtggggtcatctacggggttcctgctgcaatgctta
gaaggctccgtgaggcatgtgcctttgaacacttgtcaggagtctttcct
gatgtggtatctttggacaaggtctcatgagtcccaggtgaaacttacta
agtagcttactctgtccttgaactcctgatcctcttcgctccacttccca
agaacttgagttattggtgtgccccaccatgtctgcccttgtgcctaggc
tggttttgccttggcattttcaaggtgctacacatttatatcctaactgc
aaacacttttggaccatcagaaaagtggggtgcaaagactcatggtgagc
tggtagaagcagagacaaaccagaagaggcaccgtttttttctgtaacca
ctggccctctggcaacaactgctgcatctctacttcctgtatgagcattg
tcccaggagacacctgtcctttcctagatatggagtacgctcattctacc
taggctcgtctacatcctgacaggcaccaccttaggctggccactcagat
ctggaagctcagccacaagcactctggttagaaaccgctctcgctaaggg
taacagccatcccaagcccatagggtattttgacaaagacgataaagccc
agtagatttccttcagcatagccccccccagcccttcaaagggtgctctt
ctgaagcatctcccatacgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108258852_108259910
seq2: B6Ng01-170K06.b_47_1081 (reverse)

seq1  CAGCAGCCTATTGTCAGAAAAGTGAGTTGACAAGTTGTTAGACCTGCTAG  50
      ||||||| || |||||||||||||| | | |||||    ||| | |||||
seq2  CAGCAGCTTA-TGTCAGAAAAGTGACTAG-CAAGT--GCAGA-CAGCTAG  45

seq1  GTGTGTATGTGAGTTCTC-CTTGGGTACACTGACTTCTCTTTATTTCCCG  99
      ||| ||| || |   ||| | | |||||||||||||||||| | || |||
seq2  GTG-GTA-GTCA---CTCTCGTAGGTACACTGACTTCTCTTCA-TTGCCG  89

seq1  GGAGGATGAAAACGGTTACATGGTTGAAAATGAAGCAGGTGAGACTTTGT  149
      ||| |||| || | ||| ||| | |  |||  | ||| | ||| || |||
seq2  GGA-GATG-AATCCGTTGCATAGATTGAAAGCAGGCA-GCGAG-CTATGT  135

seq1  AATGTTTTTGGATTTTGGTTTGTTTTTGTTTTTGAAACAGGGTTTTTCTG  199
       ||||  |||  |||  |||||||||||| ||  | ||||| || |  ||
seq2  TATGTGATTGAGTTT--GTTTGTTTTTGTATTCAAGACAGGTTTGTGTTG  183

seq1  AGTATCCCTTACTAGTAAGTAGTTCTGGAACT-TTCTATGTAGCCCAAAC  248
      | |||||| ||  ||||||||||||| ||||| | ||||||||||| |||
seq2  ACTATCCCATA-AAGTAAGTAGTTCT-GAACTATGCTATGTAGCCC-AAC  230

seq1  CAGCCTCAAACTCAGAGATCCCTAAGTACTGAGATTAAAGATGTACCAGG  298
      ||| | ||||||||| ||||||||||  ||||||| | ||| || |||||
seq2  CAG-CACAAACTCAGCGATCCCTAAGAGCTGAGATAAGAGACGTGCCAGG  279

seq1  CTTTAGACCTTGTTTATGTTTCCTGAGACAGGATCTCTGTGTATCCCGGG  348
      |||||||| | ||||| |||||  ||||||||||||| ||||||||||| 
seq2  CTTTAGACTTAGTTTACGTTTCACGAGACAGGATCTCAGTGTATCCCGGT  329

seq1  CTGGTCTTGTTCTGGTCATCTCCTGCCTCTTGTATGCTGGAATTTTGGCC  398
      ||||||||||||  |||||||| ||| | | |||||||||||| ||||||
seq2  CTGGTCTTGTTCATGTCATCTCTTGCGTATGGTATGCTGGAATCTTGGCC  379

seq1  TGAATGACTATTCTACTTCTCTCTGGGATATGAAGTATTTGTGAGTAACT  448
      |||||||||||| |||||||||||||||||||||||| |||| || ||||
seq2  TGAATGACTATTTTACTTCTCTCTGGGATATGAAGTAGTTGTAAGCAACT  429

seq1  CAGGATGTTCCTAAGTGGCCTCCAAATACAAGAGCTGCCTGCTGGTTTGG  498
      ||| ||||||| | ||||||||||||||||||||||||||| ||||||| 
seq2  CAGTATGTTCCGACGTGGCCTCCAAATACAAGAGCTGCCTGTTGGTTTGC  479

seq1  AATGCCCATAGTACTTGGAACCCAGCTCTTCAGTTGGGCTGTGTGGACAT  548
      |||||||||||||||  ||||||| |||||||||||||| | ||||||||
seq2  AATGCCCATAGTACTCCGAACCCATCTCTTCAGTTGGGCGGAGTGGACAT  529

seq1  AATCGAATGCATTGCACCTTGCACCGCTTCCTTTTCCCCAGGACTGGGAG  598
      |||  |||||| ||| |||||||||| ||||||||||||||| |||||||
seq2  AATGCAATGCACTGCGCCTTGCACCGTTTCCTTTTCCCCAGGGCTGGGAG  579

seq1  TGAACCTAGGGCCGAATAGAATACATGACTCACTGAGTGTCCTAGCACTG  648
      ||| |||||||||||||||||||||||||||  | |||||||||||||||
seq2  TGAGCCTAGGGCCGAATAGAATACATGACTCGTTTAGTGTCCTAGCACTG  629

seq1  AGCTATATCCAGCCCTCTTTTTTTTTTCTTTGAGATGGTGTTGTACTGAG  698
      ||  |||||||||||| |||||||||||||||||||||||||||| ||||
seq2  AGTCATATCCAGCCCTTTTTTTTTTTTCTTTGAGATGGTGTTGTATTGAG  679

seq1  TTAACCAGGCCAAATTTGAACTCACTTATAGCTCAAGTAGGCCTAGAACT  748
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAACCAGGCCAAATTTGAACTCAATTATAGCTCAAGTAGGCCTAGAACT  729

seq1  TTGACCATTTTGAGCCTTTTCATTGAGGCTCCTGGATGTTGAGATAACTA  798
       |||||||| |||||||||||||| ||||||| |||||||||||||| ||
seq2  CTGACCATTCTGAGCCTTTTCATTTAGGCTCCAGGATGTTGAGATAAGTA  779

seq1  GTGTGAGCCACCATGCTTACCTAACAACTTCTCTTTTTCTTTTTCTTTTT  848
      ||| |||||||||| |||||||||||     ||||||| ||||| |||||
seq2  GTGCGAGCCACCATCCTTACCTAACA-----TCTTTTTTTTTTTTTTTTT  824

seq1  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTT  874

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTAGAT  924

seq1  TTATTTATTTATTAAAGTACACTGTTGTTGTCTTCAGGCACTCCAGAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTAAAGTACACTGTTGTTGTCTTCAGGCACTCCAGAAGA  974

seq1  GGGCGGCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGG  1024

seq1  GATTTGAATTC  1059
      |||||||||||
seq2  GATTTGAATTC  1035

seq1: chr9_108105755_108106941
seq2: B6Ng01-170K06.g_67_1238

seq1  GAATTCAGATCCTCTGCTTTTCTCTCTACCTCTCTTGAGGGCCGACTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATCCTCTGCTTTTCTCTCTACCTCTCTTGAGGGCCGACTCTT  50

seq1  GACTATAATCCATTATCTCAACTCCATGCCCCAGTTCACTGGGTATCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATAATCCATTATCTCAACTCCATGCCCCAGTTCACTGGGTATCTTG  100

seq1  GAGCCCCTTGGAGACAGCACTGTCCTAACCTCAATAACAGACTGGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTTGGAGACAGCACTGTCCTAACCTCAATAACAGACTGGAGAGC  150

seq1  CTTGCTGGAGGGATCCCAGGAAGTAGCCCTGCGTCAAATCAAGTAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGAGGGATCCCAGGAAGTAGCCCTGCGTCAAATCAAGTAGAAAA  200

seq1  ACAGGTTCCTCTTAGTACCCTTCTGCCTGCCCCCTGCCCTCCTATCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCCTCTTAGTACCCTTCTGCCTGCCCCCTGCCCTCCTATCACCT  250

seq1  TCTGTTCATAGGCAGACTCACTTCCACCAAGACAAGATCATAGGAACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCATAGGCAGACTCACTTCCACCAAGACAAGATCATAGGAACTTG  300

seq1  GCCTGAGGGCTGGGGAGCAGGCCATCTACCAGGCTCAACAGCAACTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGGGCTGGGGAGCAGGCCATCTACCAGGCTCAACAGCAACTCACC  350

seq1  TCCTGCAAAGAAGACAGGAAGCAGCTGGAGCCCCGTGCAGCCTGTAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAAGAAGACAGGAAGCAGCTGGAGCCCCGTGCAGCCTGTAGCTT  400

seq1  CTCGATCATCCTCAGTTTCATCTTAAGCTGAGCTTTCTGAGGGTCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATCATCCTCAGTTTCATCTTAAGCTGAGCTTTCTGAGGGTCAGCTT  450

seq1  AACTGAGAGCAATTGTGGGGTCATCTACGGGGTTCCTGCTGCAATGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGAGCAATTGTGGGGTCATCTACGGGGTTCCTGCTGCAATGCTTA  500

seq1  GAAGGCTCCGTGAGGCATGTGCCTTTGAACACTTGTCAGGAGTCTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCCGTGAGGCATGTGCCTTTGAACACTTGTCAGGAGTCTTTCCT  550

seq1  GATGTGGTATCTTTGGACAAGGTCTCATGAGTCCCAGGTGAAACTTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTATCTTTGGACAAGGTCTCATGAGTCCCAGGTGAAACTTACTA  600

seq1  AGTAGCTTACTCTGTCCTTGAACTCCTGATCCTCTTCGCTCCACTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTACTCTGTCCTTGAACTCCTGATCCTCTTCGCTCCACTTCCCA  650

seq1  AGAACTTGAGTTATTGGTGTGCCCCACCATGTCTGCCCTTGTGCCTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGAGTTATTGGTGTGCCCCACCATGTCTGCCCTTGTGCCTAGGC  700

seq1  TGGTTTTGCCTTGGCATTTTCAAGGTGCTACACATTTATATCCTAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGCCTTGGCATTTTCAAGGTGCTACACATTTATATCCTAACTGC  750

seq1  AAACACTTTTGGACCATCAGGAAAAGTGGGGTGCAAAGACTCATGGTGAG  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAACACTTTTGGACCATCA-GAAAAGTGGGGTGCAAAGACTCATGGTGAG  799

seq1  CTGGTAGAAGCAGAGACAAACCAGAAGAGGCACCGTTTTTTTCTGTAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGAAGCAGAGACAAACCAGAAGAGGCACCGTTTTTTTCTGTAACC  849

seq1  ACTGGCCCTCTGGCAACAACTGCTGCATCTCTACTTCCTGTATGAGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCCTCTGGCAACAACTGCTGCATCTCTACTTCCTGTATGAGCATT  899

seq1  GTCCCAGGAGAACACCTGTCCTTTCCTAGATATGGAGTACGCTCATTCTA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGAG-ACACCTGTCCTTTCCTAGATATGGAGTACGCTCATTCTA  948

seq1  CCTAGGCCCGTCTACATCCTGACAGGCACCACCTTAGGGCTGGCCACCCA  1000
      ||||||| |||||||||||||||||||||||||||| |||||||||| ||
seq2  CCTAGGCTCGTCTACATCCTGACAGGCACCACCTTA-GGCTGGCCACTCA  997

seq1  GAATCTGGAAGCTCAAGCACAAAGCACCCTGGTTAGAAACCG--CTCGCT  1048
      | |||||||||||||  ||| |||||| ||||||||||||||  ||||||
seq2  G-ATCTGGAAGCTCAGCCAC-AAGCACTCTGGTTAGAAACCGCTCTCGCT  1045

seq1  AAGGTTACCAGCCAATCCCAAGCCCATA-GGTATTTTTGGACAAAAGACG  1097
      |||| || ||||| |||||||||||||| ||||||||  ||| |||||||
seq2  AAGGGTAACAGCC-ATCCCAAGCCCATAGGGTATTTT--GAC-AAAGACG  1091

seq1  ATAAAAGCCACAGTAGAGTTTCCATCAGCATAGCTCCACCCCAG-CCTTC  1146
      || |||||| ||||||| ||||| |||||||||| || |||||| |||||
seq2  AT-AAAGCC-CAGTAGA-TTTCCTTCAGCATAGC-CCCCCCCAGCCCTTC  1137

seq1  AGAGAGGCTGCCTCTTCTGAGGCACATCTCCCATCACGCTC  1187
        | ||| || ||||||||| |  |||||||||| ||||||
seq2  --AAAGGGTG-CTCTTCTGAAG--CATCTCCCAT-ACGCTC  1172