BAC Information

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BAC

Clone NameB6Ng01-170K11
Chromosome9 (Build37)
Map Location 24,318,674 - 24,319,596
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1
Downstream geneCypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170K11.bB6Ng01-170K11.g
ACCDH961311DH961312
length1,006927
definitionDH961311|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K11, 5' end.DH961312|Mus musculus domesticus DNA, BAC clone: B6Ng01-170K11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttaattctcttagacttgaggtttgggcaatgagatgagaatg
gatcagttcggaatgttttacatgatacccgccagttgtgctagcaccag
tttttgaaaatgctgtctttttttccactggatggttttagctcctttgt
caaagatcaaattaccataggtgtgtgggttcatttctgggtcttcaatt
ctattccattgatatacctgtctgttgctgtaccagtaccatgaagtttt
cgttttgttgttgttgctgttgttgttgttgtttaaaatcacaattgctt
tgcagtacaggttgaggtcaggcatggtgattctgccagaggttcaatta
ttgttgagaacagtttttgctatcctaggttttttgttattccagatgaa
tttgcaaattgacttttctaactctgtgaagaattgagttggaattttaa
tggtgattgcattgaatctgtagattgctttatcaagacagccattttta
ctatattaactgtgtcagtccatgagcatgggagaccttccatcttctga
gatcccctttgatttctttcctcagagacttgactttcttatcatacaga
tcttccatttgcttagttagagtcacaataaggtattttatattatttgt
gactattgtgaaggtgttgtttccctaatttctttctcagcccttttaac
ctttgtctagagaaaggccattgacttgtttgagttaattttatatccag
ctaccgcactgaagctgtttatcatgcttaggtattctctggtggaattt
ttagggtcacttatatattactatcatatcatctgcaaagagtggtattt
tgacttctccctttccaatttgtatccccttgatctcttttgttgtctaa
tgctctggctagtacttcatgctgcatgagtagtaggagaatgtggcatc
cctgtcagtcctgaatttattggatgcttaagttcctaccattaaattaa
gttggt
gaattccattccttgactgggaatggtctctgaaaggtcacgtgactcat
cctgaacgaaaaaatcggggcttctccagggacacatgtaagtgcttcct
ggggtcatttggtcctcagatgtgccacagcagtcacgtcactttagtgg
agtcattcgttggtaccctgaacggaggaagcccacacgtcttgcattcc
catcctgttagaagattctgccaagctttaataaaagcaaaaccgagatg
gatgtcagtcgccctggaaagggtgaactctgactgctctgctctcagtg
cttatttcctcttgccttcacgtttcttccagaaatccacccccaaatta
tgttctttttcatttcaaatgaatagcttcatggatcccgtgtgtgtctc
tgggctgcatatactaactgataccctgctgaattcagcccccacatgaa
tgttttttatacaaaagccaaaggatctacataatgtttgtgtggaaatg
ccacggcttcaggattcagttcaggattcttatatatcttctttccccca
gtcctttcttacatacaacgcatttgaggatatttcattataaagaacaa
attatatgggggaagttagttttgaaacatcggtatgtatcctttggcta
gattccaaatgatcacaatggccataagagatataagttcatactaatat
atcaattaattatctcaacattctcaaggtcttgatggttggggaatttg
aggattaacaacaacaacaacattgatttggaacttcagggcctactagg
ggttgggcaacgtgtgtgattttgagggcaaatatgaagaaagccatgct
ctgtcctaactcggcatgaattgttgaagataccctcaccttgaatccca
gtctgtgatagatactactggtgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24318674_24319596
seq2: B6Ng01-170K11.g_71_990

seq1  GAATTCAATTCCTTGACTGGGAATGGTCTCTGAAAGGTCACGTGACTCAT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCTTGACTGGGAATGGTCTCTGAAAGGTCACGTGACTCAT  50

seq1  CATGAAGGAAGAAATCAGGGCTTCTCCAGGGACACATGTAAGTGCTTCCT  100
      | |||| ||| ||||| |||||||||||||||||||||||||||||||||
seq2  CCTGAACGAAAAAATCGGGGCTTCTCCAGGGACACATGTAAGTGCTTCCT  100

seq1  GGGGTCATTTGGTCCTCAGATGTGCCACAGCAGTCACGTCACTTTAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCATTTGGTCCTCAGATGTGCCACAGCAGTCACGTCACTTTAGTGG  150

seq1  AGTCATTCGTTGGTACCCTGAAGGGAGGAAGCACACACGTCTTGCATTCC  200
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  AGTCATTCGTTGGTACCCTGAACGGAGGAAGCCCACACGTCTTGCATTCC  200

seq1  CATCCAGTTAGAAGAGTCTGCAAAGCTTTAATAAAAGCAAAACCGAGATG  250
      ||||| ||||||||| ||||| ||||||||||||||||||||||||||||
seq2  CATCCTGTTAGAAGATTCTGCCAAGCTTTAATAAAAGCAAAACCGAGATG  250

seq1  GATGTCAGTCGCCCTGGAAAGGGTGAACTCTGACTGCTCTGCTCTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGTCGCCCTGGAAAGGGTGAACTCTGACTGCTCTGCTCTCAGTG  300

seq1  CTTATTTCCTCTTGCCTTCACGTTTCTTCCAGAAATCCACCCCCAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCCTCTTGCCTTCACGTTTCTTCCAGAAATCCACCCCCAAATTA  350

seq1  TGTTCTTTTTCATTTCAAATGAATAGCTTCGTGGATCCCGTGTGTGTCTC  400
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTTCTTTTTCATTTCAAATGAATAGCTTCATGGATCCCGTGTGTGTCTC  400

seq1  TGGGCTGCAGATACTAAGTGATACACTGCTGAATTCAACCCACACATGAG  450
      ||||||||| ||||||| |||||| |||||||||||| ||| ||||||| 
seq2  TGGGCTGCATATACTAACTGATACCCTGCTGAATTCAGCCCCCACATGAA  450

seq1  TGTTATTTAGACAAAAGCCAAAGGATCTACATAATGTCTGTGTGGAAATG  500
      |||| |||| ||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTTTTATACAAAAGCCAAAGGATCTACATAATGTTTGTGTGGAAATG  500

seq1  CCAGGGCTTCAGGATTCAGTTCAGTATTCTTATATATCTTCTTTCCCCCA  550
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCACGGCTTCAGGATTCAGTTCAGGATTCTTATATATCTTCTTTCCCCCA  550

seq1  GTCCTTTCTTACATAGAACGCATTTGAGGATATTTCATTAAAAAGAAGAA  600
      ||||||||||||||| |||||||||||||||||||||||| |||||| ||
seq2  GTCCTTTCTTACATACAACGCATTTGAGGATATTTCATTATAAAGAACAA  600

seq1  ATTATATGGGGGAAGTTAGTTTTGAAACATCAGTATGTTTCCTTTGGCTA  650
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  ATTATATGGGGGAAGTTAGTTTTGAAACATCGGTATGTATCCTTTGGCTA  650

seq1  GATTCCAAATGATCACAATGGCCATAAGAGATATAAGTTCATACTAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCAAATGATCACAATGGCCATAAGAGATATAAGTTCATACTAATAT  700

seq1  ATCAATTAATTATCTCAACATTCTCAAGGCCTTGTTGGTTGGGGAATTTG  750
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  ATCAATTAATTATCTCAACATTCTCAAGGTCTTGATGGTTGGGGAATTTG  750

seq1  AGGATTAAAAACAACAACAACATTGATTTGGAACTTCAGGGCCTACTAGG  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAACAACAACAACAACATTGATTTGGAACTTCAGGGCCTACTAGG  800

seq1  GGTTGGGCAACAGGTGTGATTTTGAGGGCAAATATGAAGAAAGCCATGCT  850
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGCAACGTGTGTGATTTTGAGGGCAAATATGAAGAAAGCCATGCT  850

seq1  CTGCCCTAACTCGGCAATGAATTGTTGAAGATAGCCCTCACCATGAATCC  900
      ||| ||||||||||| ||||||||||||||||| |||||||| |||||||
seq2  CTGTCCTAACTCGGC-ATGAATTGTTGAAGATA-CCCTCACCTTGAATCC  898

seq1  CAAGTCTGTGATGGATAGTACTG  923
      | |||||||||| |||| |||||
seq2  C-AGTCTGTGATAGATACTACTG  920