BAC Information

Click to search

BAC

Clone NameB6Ng01-171N05
Chromosome9 (Build37)
Map Location 33,920,985 - 34,071,388
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171N05.bB6Ng01-171N05.g
ACCGA000605GA000606
length1,1821,016
definitionB6Ng01-171N05.b B6Ng01-171N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,920,985 - 33,922,169)(34,070,367 - 34,071,388)
sequence
gaattcatgggtgtcagatttcaggtggatgaaacaaaatgggaggtaac
aaagcaaagctacaaattgaggaacatttaggagattcaaacatcaagta
taaaaagctttacagaaccacatcacattctcaaaagaatcacacagtgt
cagccaagagctgaattacatagagaattgccccatttcttcatagagca
aatctgtacataggttaggaagaaagctcagttggtaagatgcttatctc
aacagcatagtgaatctgagttccatccacagaacagaacagatgacaaa
gacaggagggggtgaggagtatcccatacttttcattgcagaactggaga
ggcagagaatggacatagctggggacaggttgaccccgaggctaccctaa
cctacttagaaaactccaagccatcaagagaccctccgctcaagggaaca
ttgaaataacagtaaggaatgaaagaaacagcactcaaagttgtcctctg
gtcttcactctctctctctctctctctctctctctctctctctctcacac
acacacacacacacacacacacacacagagagagagagagagagagagag
acagacaaagacacagagacacagagacacgaagacagagagacagagag
agagagagacagacagacaggaaaaatcatcacttcacacttgacacttg
tggctctaattagacaaagaatccagaaagtcattgggagaatatctact
tttcctgatgattttgcatcttttaggaagaaatcatggaaagggaaaca
ggaacagagcttgtctccagctggcactgatttcccacaccccagtgcag
caatcaccttggaactggaaatctcagatcggagcttcttctgtatctgg
ttgccccatccatgaaggaacaaaacaagtaccttctctttctcagtgaa
aatttttgttttcttttgcctttaggaacgttaaatacattcacaactaa
ttccaggatgatctccaagcaatattggagggcattgttgtcaggatatg
acatgcctggctgaagatcacagcacacttttgaattgttactttagacc
cctttcatgatcatatgcaacgagataggattcattggccaggcattata
gcaatggtctaccttagaaggcttgaattcca

gaattcaatttaaatacacttgggcagtatgggaaagtcacttggtcatt
ttgagactatggataacacatgccaaagcctagatgctgactgggctctt
cctttcatcatgtttctttatgaatgtcacttccaattttccatactagc
tttctccatgaggccagatccatggccacaggctctgccaatgctgtgtc
ttcttatcttccccaccagactttaagagaatctcttcccttaaattaat
ttccaaaggccccaaagaaagattctgattggcttggcttgggtcacatc
atcaactctgtggccctgagcattcaaaagcatagtcagccaggggtgga
gtttctaaatagtcccatcagagaagcaaaaagtactgtagaaaaaaaca
aacaaacaaagaaaccccacttaccctccgttgtacatatgaagaagaag
agtttgtttactgaatgacatattctcgttaagatggaaaaaattactac
caataaagaaaatgttttatactagccagttcttttctttcctatagtta
accccattataagaatgaaacactttgttattttagataataaaactcaa
gtcagtaacttccaaggtgccatcacactgaattgtgatttcctatacag
aagactgtcttcctatgactgttgagctctttaatctcagaaaccaattc
tgaggccaatttcatcacagaaaaacagtagaaaaaaattgccaattcat
atataaatagggaagagaggaaagaagagaagagaagggatctttatgtg
cacattcccctccacccagtggtgatagatgatccatgatacaaatagga
tccatgatacaaacaaatccagctcagggcagaagaatcggggccaaatg
aattataaaaacatctctctatggtgcagaagtattttgtcttctggagg
aggattagattagcttcataggagctcacttttcagctttcaataggaaa
ctacagtaacttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33920985_33922169
seq2: B6Ng01-171N05.b_48_1229

seq1  GAATTCATGGGTGTCAGATTTCAGGTGGATGAAACAAAATGGGAGGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGGTGTCAGATTTCAGGTGGATGAAACAAAATGGGAGGTAAC  50

seq1  AAAGCAAAGCTACAAATTGAGGAACATTTAGGAGATTCAAACATCAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAGCTACAAATTGAGGAACATTTAGGAGATTCAAACATCAAGTA  100

seq1  TAAAAAGCTTTACAGAACCACATCACATTCTCAAAAGAATCACACAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTTTACAGAACCACATCACATTCTCAAAAGAATCACACAGTGT  150

seq1  CAGCCAAGAGCTGAATTACATAGAGAATTGCCCCATTTCTTCATAGAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGAGCTGAATTACATAGAGAATTGCCCCATTTCTTCATAGAGCA  200

seq1  AATCTGTACATAGGTTAGGAAGAAAGCTCAGTTGGTAAGATGCTTATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTACATAGGTTAGGAAGAAAGCTCAGTTGGTAAGATGCTTATCTC  250

seq1  AACAGCATAGTGAATCTGAGTTCCATCCACAGAACAGAACAGATGACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATAGTGAATCTGAGTTCCATCCACAGAACAGAACAGATGACAAA  300

seq1  GACAGGAGGGGGTGAGGAGTATCCCATACTTTTCATTGCAGAACTGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGGGGGTGAGGAGTATCCCATACTTTTCATTGCAGAACTGGAGA  350

seq1  GGCAGAGAATGGACATAGCTGGGGACAGGTTGACCCCGAGGCTACCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGAATGGACATAGCTGGGGACAGGTTGACCCCGAGGCTACCCTAA  400

seq1  CCTACTTAGAAAACTCCAAGCCATCAAGAGACCCTCCGCTCAAGGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTAGAAAACTCCAAGCCATCAAGAGACCCTCCGCTCAAGGGAACA  450

seq1  TTGAAATAACAGTAAGGAATGAAAGAAACAGCACTCAAAGTTGTCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAACAGTAAGGAATGAAAGAAACAGCACTCAAAGTTGTCCTCTG  500

seq1  GTCTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC  550

seq1  ACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAG  600

seq1  ACAGACAAAGACACAGAGACACAGAGACACGAAGACAGAGAGACAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAAAGACACAGAGACACAGAGACACGAAGACAGAGAGACAGAGAG  650

seq1  AGAGAGAGACAGACAGACAGGAAAAATCATCACTTCACACTTGACACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGACAGACAGACAGGAAAAATCATCACTTCACACTTGACACTTG  700

seq1  TGGCTCTAATTAGACAAAGAATCCAGAAAGTCATTGGGAGAATATCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTAATTAGACAAAGAATCCAGAAAGTCATTGGGAGAATATCTACT  750

seq1  TTTCCTGATGATTTTGCATCTTTTAGGAAGAAATCATGGAAAGGGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGATGATTTTGCATCTTTTAGGAAGAAATCATGGAAAGGGAAACA  800

seq1  GGAACAGAGCTTGTCTCCAGCTGGCACTGATTTCCCACACCCCAGTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAGCTTGTCTCCAGCTGGCACTGATTTCCCACACCCCAGTGCAG  850

seq1  CAATCACCTTGGAACTGGAAATCTCAGATCGGAGCTTCTTCTGTATCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCTTGGAACTGGAAATCTCAGATCGGAGCTTCTTCTGTATCTGG  900

seq1  TTGCCCAATCCATGAAGGAAC-AAACAAGTACCTTCTCTTTCTCAGGTGA  949
      |||||| |||||||||||||| ||||||||||||||||||||||| ||||
seq2  TTGCCCCATCCATGAAGGAACAAAACAAGTACCTTCTCTTTCTCA-GTGA  949

seq1  AAATTTTTGTTTTCTTTTGCCTTTTAAGGAACGTTTTAATACCATTCACA  999
      ||||||||||||||||||||||||  ||||||| || |||| ||||||||
seq2  AAATTTTTGTTTTCTTTTGCCTTT--AGGAACG-TTAAATA-CATTCACA  995

seq1  ACCAATTTCCAGGATGATCTCC-AGCAATATTTTGAGGCA-TGTTGTCAA  1047
      || || |||||||||||||||| |||||||||    |||| |||||||| 
seq2  ACTAA-TTCCAGGATGATCTCCAAGCAATATTGGAGGGCATTGTTGTCAG  1044

seq1  GATATGACATGCTAGGCTGAGGATCACAGGGCACTTTTGATTTGTTACTT  1097
      ||||||||||||  |||||| ||||||||  ||||||||| |||||||||
seq2  GATATGACATGCCTGGCTGAAGATCACAGCACACTTTTGAATTGTTACTT  1094

seq1  ATGACCCTCTTCATAGTCAT-TGAGAGGAGGAATGATTCATTGGCAGGGC  1146
        |||||  |||||  |||| ||  | |||  | |||||||||||  || 
seq2  TAGACCCCTTTCATGATCATATGCAACGAGATAGGATTCATTGGCCAGG-  1143

seq1  CATTAT-GGGATAGGCAACTCTATGAAGGCTTGTATTCCA  1185
      |||||| |  || | | || ||  ||||||||| ||||||
seq2  CATTATAGCAATGGTCTAC-CTTAGAAGGCTTGAATTCCA  1182


seq1: chr9_34070367_34071388
seq2: B6Ng01-171N05.g_65_1080 (reverse)

seq1  TTGCAGGTTACTGGTTAGTTTCTAATGGAAAGCCTGAAAGGTGAGCTTCC  50
      ||||| |||||||  |||||||  || ||||| |||||| |||||||  |
seq2  TTGCAAGTTACTG--TAGTTTCCTATTGAAAG-CTGAAAAGTGAGCT--C  45

seq1  TTATGAAGCTTAATCTAATCCTCCT-CAGAAGAACAAAATACTTCTGCAC  99
       |||||||| ||||||||||||||| |||||| |||||||||||||||||
seq2  CTATGAAGC-TAATCTAATCCTCCTCCAGAAG-ACAAAATACTTCTGCAC  93

seq1  CATAGAGAGATGTTTTTATAATTCATTTGGCCCCGATTCTTCTGCCTTGA  149
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATAGAGAGATGTTTTTATAATTCATTTGGCCCCGATTCTTCTGCCCTGA  143

seq1  GCTGGATTTGTTTGTATCATGGATCCTATTTGTATCATGGATCATCTATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTTGTTTGTATCATGGATCCTATTTGTATCATGGATCATCTATC  193

seq1  ACCACTGGGTGGAGGGGAATGTGCACATAAAGATCCCTTCTCTTCTCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGGGTGGAGGGGAATGTGCACATAAAGATCCCTTCTCTTCTCTTC  243

seq1  TTTCCTCTCTTCCCTATTTATATATGAATTGGCAATTTTTTTCTACTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCTTCCCTATTTATATATGAATTGGCAATTTTTTTCTACTGTT  293

seq1  TTTCTGTGATGAAATTGGCCTCAGAATTGGTTTCTGAGATTAAAGAGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGATGAAATTGGCCTCAGAATTGGTTTCTGAGATTAAAGAGCTC  343

seq1  AACAGTCATAGGAAGACAGTCTTCTGTATAGGAAATCACAATTCAGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCATAGGAAGACAGTCTTCTGTATAGGAAATCACAATTCAGTGTG  393

seq1  ATGGCACCTTGGAAGTTACTGACTTGAGTTTTATTATCTAAAATAACAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCTTGGAAGTTACTGACTTGAGTTTTATTATCTAAAATAACAAA  443

seq1  GTGTTTCATTCTTATAATGGGGTTAACTATAGGAAAGAAAAGAACTGGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCATTCTTATAATGGGGTTAACTATAGGAAAGAAAAGAACTGGCT  493

seq1  AGTATAAAACATTTTCTTTATTGGTAGTAATTTTTTCCATCTTAACGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAACATTTTCTTTATTGGTAGTAATTTTTTCCATCTTAACGAGA  543

seq1  ATATGTCATTCAGTAAACAAACTCTTCTTCTTCATATGTACAACGGAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCATTCAGTAAACAAACTCTTCTTCTTCATATGTACAACGGAGGG  593

seq1  TAAGTGGGGTTTCTTTGTTTGTTTGTTTTTTTCTACAGTACTTTTTGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGGGTTTCTTTGTTTGTTTGTTTTTTTCTACAGTACTTTTTGCTT  643

seq1  CTCTGATGGGACTATTTAGAAACTCCACCCCTGGCTGACTATGCTTTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGGGACTATTTAGAAACTCCACCCCTGGCTGACTATGCTTTTGA  693

seq1  ATGCTCAGGGCCACAGAGTTGATGATGTGACCCAAGCCAAGCCAATCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGGGCCACAGAGTTGATGATGTGACCCAAGCCAAGCCAATCAGA  743

seq1  ATCTTTCTTTGGGGCCTTTGGAAATTAATTTAAGGGAAGAGATTCTCTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTTGGGGCCTTTGGAAATTAATTTAAGGGAAGAGATTCTCTTA  793

seq1  AAGTCTGGTGGGGAAGATAAGAAGACACAGCATTGGCAGAGCCTGTGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGTGGGGAAGATAAGAAGACACAGCATTGGCAGAGCCTGTGGCC  843

seq1  ATGGATCTGGCCTCATGGAGAAAGCTAGTATGGAAAATTGGAAGTGACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCTGGCCTCATGGAGAAAGCTAGTATGGAAAATTGGAAGTGACAT  893

seq1  TCATAAAGAAACATGATGAAAGGAAGAGCCCAGTCAGCATCTAGGCTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGAAACATGATGAAAGGAAGAGCCCAGTCAGCATCTAGGCTTTG  943

seq1  GCATGTGTTATCCATAGTCTCAAAATGACCAAGTGACTTTCCCATACTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGTTATCCATAGTCTCAAAATGACCAAGTGACTTTCCCATACTGC  993

seq1  CCAAGTGTATTTAAATTGAATTC  1022
      |||||||||||||||||||||||
seq2  CCAAGTGTATTTAAATTGAATTC  1016


| Home | SequenceCutter | Blast | Download |