BAC Information

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BAC

Clone NameB6Ng01-173B22
Chromosome9 (Build37)
Map Location 95,102,679 - 95,299,779
singlet/doubletdoublet
Overlap geneSlc9a9
Upstream geneEG384968, 1190002N15Rik, EG667601
Downstream geneChst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173B22.bB6Ng01-173B22.g
ACCGA001555GA001556
length1,021619
definitionB6Ng01-173B22.b B6Ng01-173B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,298,783 - 95,299,779)(95,102,679 - 95,103,294)
sequence
gaattcctcttgctttagttttctgagtttgcaggcacacaccattaaaa
tctcttcttgacttgtgaattctcgtttattattgaaggtccttgatctt
ttgaagcttttatagatatcaacactgtcccaagatgtacacataccttc
ttgttccctagtcattgccacactgtgcacggatctgctatatatatata
tatttattgttgctgttgcaggttggaatcacttgctggaaggcaggttt
cctctcccaggctcaacccatcagaagggaagggactgggtctcagaagt
acatgcctgtgtttcttagggacagaaagtattgtgtgcatacataggta
tttcttaagggagtgctaaataaaaaatgcaccccaagaaactggaacag
aaagatttggggacaaatactttgtcaaatagcttgagatttagtgaagc
gcagccctcagctgcatggccaacagaggctaagagaacaagaagagtta
tcatgaatgaaaaggaacagcaagttaacttccaaggaggagccaggcag
ttgtcttcttcatattaaaataaactaataaatttttcacttaaaataaa
ctaatttgaataccccctccaaagaaaaataacaagtgaattatagtcaa
acaaatgataatgacttttaaagtctgcaacaggatagagtcactgtaat
gtaggtcattactgtgtgtttgggacttgtagagatggaagccaatatga
tcccctttttaagcatgtcaggtaccctgaaaaatttcaagaactattga
ggtataaatgttcacaattccatttttgagatgtcccagtgcttctggca
aattctcagcctctctagattgacctggctccttaggagaggttaaaaat
atttttaccattctcattattcgtgtatatagcaccctgccatgccatga
aatgtgtttgggttattaaccttttaaaaaggaaaaaacaaaaaaattga
aaatcggcaacctttctctct
gaattccaggatagtttaggctacacatcaagaagaaggaggaagaagag
aaggtattcccctggaatcttaggagaatcccattattctataacacaga
atttaaagaatgccatttcaaaagaaaacaattaagtggcccttcaacaa
acccataagccacgttttgctcagtgagtgctggattctaactgccatag
ccaagaccatccctacacattgggacagtgataatcagagtatgcagtgg
gccctgctcagaataagactaccacctagtcctctgccactcagtagttt
tccttgaaggtcgggatggttttatccactaggaaccatctgaggcaagt
gcccatggctacagccaagtctcatcagtgtggcactttggtgtcagaga
ctgacagctgaagggctataggtgtagacactgggatgctaagatgacaa
aaagctgggtttggtggttgtttatgggatggatccccaggtggggcagt
ttctggatgatcataccttcagtctctgctccgaaactttgtctctgtaa
ctccttccatgggtattttgttccccctttcttagaagtaacagagtatc
cacacctttggaatttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95298783_95299779
seq2: B6Ng01-173B22.b_43_1063 (reverse)

seq1  AGAGAG-AAGGT--GCGA-TTTCA--TTTTTTGTTTTT--CCTTTTAAAA  42
      |||||| |||||   ||| |||||  ||||||||||||  | ||||||||
seq2  AGAGAGAAAGGTTGCCGATTTTCAATTTTTTTGTTTTTTCCTTTTTAAAA  50

seq1  GG-TAATAACCC-AACACA-TTCAT-GCAT-GCA-GGTGC--TATACACG  84
      || ||||||||| |||||| ||||| |||| ||| |||||  ||||||||
seq2  GGTTAATAACCCAAACACATTTCATGGCATGGCAGGGTGCTATATACACG  100

seq1  AAT-ATGAGAATG--TAAAATA-TTTTAACCTCTCCT-AGGAGCCAGGTC  129
      ||| |||||||||   |||||| |||||||||||||| ||||||||||||
seq2  AATAATGAGAATGGTAAAAATATTTTTAACCTCTCCTAAGGAGCCAGGTC  150

seq1  AATCCTAGAGAGGCTGAGAATTTGCCAGAAGCACTGGGACATCTC-AAAA  178
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAT-CTAGAGAGGCTGAGAATTTGCCAGAAGCACTGGGACATCTCAAAAA  199

seq1  TGGAATTGTG-ACATTTATACCTCAATAGTTCTTGAAATTTTTCA-GGTA  226
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  TGGAATTGTGAACATTTATACCTCAATAGTTCTTGAAATTTTTCAGGGTA  249

seq1  CCTGACATGCTT-AAAAGGGGATCATATTGGCTTCCATCTCTACAAGTCC  275
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTGACATGCTTAAAAAGGGGATCATATTGGCTTCCATCTCTACAAGTCC  299

seq1  CAAACACACAGTAATGACCTACATTACAGTGACTCTATCCTGTTGCAGAC  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACAGTAATGACCTACATTACAGTGACTCTATCCTGTTGCAGAC  349

seq1  TTTAAAAGTCATTATCATTTGTTTGACTATAATTCACTTGTTATTTTTCT  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTCATTATCATTTGTTTGACTATAATTCACTTGTTATTTTTCT  399

seq1  TTGGAGGGGGTATTCAAATTAGTTTATTTTAAGTGAAAAATTTATTAGTT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGGGGTATTCAAATTAGTTTATTTTAAGTGAAAAATTTATTAGTT  449

seq1  TATTTTAATATGAAGAAGACAACTGCCTGGCTCCTCCTTGGAAGTTAACT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATATGAAGAAGACAACTGCCTGGCTCCTCCTTGGAAGTTAACT  499

seq1  TGCTGTTCCTTTTCATTCATGATAACTCTTCTTGTTCTCTTAGCCTCTGT  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCCTTTTCATTCATGATAACTCTTCTTGTTCTCTTAGCCTCTGT  549

seq1  TGGCCATGCAGCTGAGGGCTGCGCTTCACTAAATCTCAAGCTATTTGACA  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGCAGCTGAGGGCTGCGCTTCACTAAATCTCAAGCTATTTGACA  599

seq1  AAGTATTTGTCCCCAAATCTTTCTGTTCCAGTTTCTTGGGGTGCATTTTT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTGTCCCCAAATCTTTCTGTTCCAGTTTCTTGGGGTGCATTTTT  649

seq1  TATTTAGCACTCCCTTAAGAAATACCTATGTATGCACACAATACTTTCTG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGCACTCCCTTAAGAAATACCTATGTATGCACACAATACTTTCTG  699

seq1  TCCCTAAGAAACACAGGCATGTACTTCTGAGACCCAGTCCCTTCCCTTCT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAGAAACACAGGCATGTACTTCTGAGACCCAGTCCCTTCCCTTCT  749

seq1  GATGGGTTGAGCCTGGGAGAGGAAACCTGCCTTCCAGCAAGTGATTCCAA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTGAGCCTGGGAGAGGAAACCTGCCTTCCAGCAAGTGATTCCAA  799

seq1  CCTGCAACAGCAACAATAAATATATATATATATAGCAGATCCGTGCACAG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAACAGCAACAATAAATATATATATATATAGCAGATCCGTGCACAG  849

seq1  TGTGGCAATGACTAGGGAACAAGAAGGTATGTGTACATCTTGGGACAGTG  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAATGACTAGGGAACAAGAAGGTATGTGTACATCTTGGGACAGTG  899

seq1  TTGATATCTATAAAAGCTTCAAAAGATCAAGGACCTTCAATAATAAACGA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATCTATAAAAGCTTCAAAAGATCAAGGACCTTCAATAATAAACGA  949

seq1  GAATTCACAAGTCAAGAAGAGATTTTAATGGTGTGTGCCTGCAAACTCAG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGTCAAGAAGAGATTTTAATGGTGTGTGCCTGCAAACTCAG  999

seq1  AAAACTAAAGCAAGAGGAATTC  997
      ||||||||||||||||||||||
seq2  AAAACTAAAGCAAGAGGAATTC  1021

seq1: chr9_95102679_95103294
seq2: B6Ng01-173B22.g_69_687

seq1  GAATTCCAGGATAGTTTAGGCTACACATCAAGAAGAAGGAGGAAGAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGATAGTTTAGGCTACACATCAAGAAGAAGGAGGAAGAAGAG  50

seq1  AAGGTATTCCCCTGGAATCTTAGGAGAATCCCATTATTCTATAACACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTCCCCTGGAATCTTAGGAGAATCCCATTATTCTATAACACAGA  100

seq1  ATTTAAAGAATGCCATTTCAAAAGAAAACAATTAAGTGGCCCTTCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGAATGCCATTTCAAAAGAAAACAATTAAGTGGCCCTTCAACAA  150

seq1  ACCCATAAGCCACGTTTTGCTCAGTGAGTGCTGGATTCTAACTGCCATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAAGCCACGTTTTGCTCAGTGAGTGCTGGATTCTAACTGCCATAG  200

seq1  CCAAGACCATCCCTACACATTGGGACAGTGATAATCAGAGTATGCAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCATCCCTACACATTGGGACAGTGATAATCAGAGTATGCAGTGG  250

seq1  GCCCTGCTCAGAATAAGACTACCACCTAGTCCTCTGCCACTCAGTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTCAGAATAAGACTACCACCTAGTCCTCTGCCACTCAGTAGTTT  300

seq1  TCCTTGAAGGTCGGGATGGTTTTATCCACTAGGAACCATCTGAGGCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAAGGTCGGGATGGTTTTATCCACTAGGAACCATCTGAGGCAAGT  350

seq1  GCCCATGGCTACAGCCAAGTCTCATCAGTGTGGCACTTTGGTGTCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGGCTACAGCCAAGTCTCATCAGTGTGGCACTTTGGTGTCAGAGA  400

seq1  CTGACAGCTGAAGGGCTATAGGAGTAGACACTGGGATGCTAAGATGACAA  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGACAGCTGAAGGGCTATAGGTGTAGACACTGGGATGCTAAGATGACAA  450

seq1  AAAGCTGGGTTTGGTGGTTGTTTATGGGATGGATCCCCAGGTGGGGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGGGTTTGGTGGTTGTTTATGGGATGGATCCCCAGGTGGGGCAGT  500

seq1  TTCTGGATGATCATACCTTCAGTCTCTGCTCCG-AACTTTGTCTCTGTAA  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCTGGATGATCATACCTTCAGTCTCTGCTCCGAAACTTTGTCTCTGTAA  550

seq1  CTCCTTCCATGGGTATTTTGTTCCCCC-TTCTAAGAAGTAACAGAGTATC  598
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  CTCCTTCCATGGGTATTTTGTTCCCCCTTTCTTAGAAGTAACAGAGTATC  600

seq1  CACA-CTTTGGTATTTCTT  616
      |||| |||||| |||||||
seq2  CACACCTTTGGAATTTCTT  619