BAC Information

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BAC

Clone NameB6Ng01-173J05
Chromosome9 (Build37)
Map Location 64,056,976 - 64,194,843
singlet/doubletdoublet
Overlap geneMap2k1, Uchl4, Tipin, Dis3l
Upstream geneMap2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5
Downstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173J05.bB6Ng01-173J05.g
ACCGA001886GA001887
length559737
definitionB6Ng01-173J05.b B6Ng01-173J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,056,976 - 64,057,540)(64,194,113 - 64,194,843)
sequence
cagtgagtatagaacctgcacagagaggagagagtatgaaaccaaaggaa
gcagacctgcttagacgatggcactcactggctatatgatttatgtcaat
tatgaaatctcctaggacttaactatctcaacctgccagctgagagggct
gacaatccatctcatgagatgggggtgatgtgattaataacttacataat
gtgaaaaggacttggcaaatgataggagagttgaaagctagttgttatta
taactggttatgccgacatccaccttctattactttagcaagtcctaaga
ggacagaaggctactctggcccttcctgtttctggcttatcagcattgac
tcaacttctcttcttccctttctagttgcatcaaaactctttttgggcta
gaagaagggagggtcggggaggaaccatcaacaaagagtacaagaaaccc
aaaggtccaaagatgtcaggcacagtagcacacacctgttatcccagtag
gcaataggcagaggcaggaaaaaacactgcaagttcaaagaggaggagga
ggaggagga
gaattctgtagccattctgcttaggtccaaagtcaactttgccactctct
tgctgtgtgtcctgggtggttgattcagtccttcctacgtcatttctttt
cctggaaaacatatttttgaacagaagtcaaggtggtgcttttaggacta
aatgcaagaacacagaagttacaaactgggcatgaagctgcacacctaga
agccgaagcagggggattaagatgtggaggccctgggctgcatagagagc
ctttctccatcccacacccaactgttgtgccgggaagggttcacagcaaa
atgtgccaggaagggttcatgaacacccctcccccccaaaaaaaaaacaa
acaaacaacaacaaaaaaaaaaaaccaccaaggaaccgtctccgatgtaa
tagccttagggtttctttattacaagctcaggcttaggctctcctccaac
ccaactctgacacagcaggactggaagggaaagtgggagcagccctgaac
cctcagtaggacacattttataagaaaataggagcgagcgaggggtgagg
gagggggtgtccagtctggaaagcatctaatagaacggctataagctgat
gggtgggtgatctgaagcaagactatatttgatcacaaacagttttgaaa
agtacatctgaaaacaatcagactaatctttgattaactgttcgctagga
agtagctagggagtattaactctgggccaggggacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64056976_64057540
seq2: B6Ng01-173J05.b_47_611

seq1  GAATTCCAGTGAGTATAGAACCTGCACAGAGAGGAGAGAGTATGAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGAGTATAGAACCTGCACAGAGAGGAGAGAGTATGAAACCA  50

seq1  AAGGAAGCAGACCTGCTTAGACGATGGCACTCACTGGCTATATGATTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGCAGACCTGCTTAGACGATGGCACTCACTGGCTATATGATTTAT  100

seq1  GTCAATTATGAAATCTCCTAGGACTTAACTATCTCAACCTGCCAGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTATGAAATCTCCTAGGACTTAACTATCTCAACCTGCCAGCTGAG  150

seq1  AGGGCTGACAATCCATCTCATGAGATGGGGGTGATGTGATTAATAACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGACAATCCATCTCATGAGATGGGGGTGATGTGATTAATAACTTA  200

seq1  CATAATGTGAAAAGGACTTGGCAAATGATAGGAGAGTTGAAAGCTAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTGAAAAGGACTTGGCAAATGATAGGAGAGTTGAAAGCTAGTTG  250

seq1  TTATTATAACTGGTTATGCCGACATCCACCTTCTATTACTTTAGCAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAACTGGTTATGCCGACATCCACCTTCTATTACTTTAGCAAGTC  300

seq1  CTAAGAGGACAGAAGGCTACTCTGGCCCTTCCTGTTTCTGGCTTATCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGGACAGAAGGCTACTCTGGCCCTTCCTGTTTCTGGCTTATCAGC  350

seq1  ATTGACTCAACTTCTCTTCTTCCCTTTCTAGTTGCATCAAAACTCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCAACTTCTCTTCTTCCCTTTCTAGTTGCATCAAAACTCTTTTT  400

seq1  GGGCTAGAAGAAGGGAGGGTCGGGGAGGAACCATCAACAAAGAGTACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGAAGAAGGGAGGGTCGGGGAGGAACCATCAACAAAGAGTACAAG  450

seq1  AAACCCAAAGGTCCAAAGATGTCAGGCACAGTAGCACACACCTGTTATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAAGGTCCAAAGATGTCAGGCACAGTAGCACACACCTGTTATCC  500

seq1  CAGTAGGCAATAGGCAGAGGCAGGAAAAAACACTGCAAGTTCAAAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCAATAGGCAGAGGCAGGAAAAAACACTGCAAGTTCAAAGAGGA  550

seq1  GGAGGAGGAGGAGGA  565
      |||||||||||||||
seq2  GGAGGAGGAGGAGGA  565

seq1: chr9_64194113_64194843
seq2: B6Ng01-173J05.g_68_804 (reverse)

seq1  TTGT-CCCTGG-CCAGAGTTACTACTCCCTAGCTACTTCCTAGC-AACAG  47
      |||| |||||| ||||||||| |||||||||||||||||||||| |||||
seq2  TTGTCCCCTGGCCCAGAGTTAATACTCCCTAGCTACTTCCTAGCGAACAG  50

seq1  TTAATCAAAGATTAGTCTGATTG-TTTCAGATGTACTTT--CAAACTGTT  94
      ||||||||||||||||||||||| |||||||||||||||   ||||||||
seq2  TTAATCAAAGATTAGTCTGATTGTTTTCAGATGTACTTTTCAAAACTGTT  100

seq1  TGTGATCAAATATAGTCTTGCTTCAGATCACCCACCCATCAGCTTATAGC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCAAATATAGTCTTGCTTCAGATCACCCACCCATCAGCTTATAGC  150

seq1  CGTTCTATTAGATGCTTTCCAGACTGGACACCCCCTCCCTCACCCCTCGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTATTAGATGCTTTCCAGACTGGACACCCCCTCCCTCACCCCTCGC  200

seq1  TCGCTCCTATTTTCTTATAAAATGTGTCCTACTGAGGGTTCAGGGCTGCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTCCTATTTTCTTATAAAATGTGTCCTACTGAGGGTTCAGGGCTGCT  250

seq1  CCCACTTTCCCTTCCAGTCCTGCTGTGTCAGAGTTGGGTTGGAGGAGAGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTCCCTTCCAGTCCTGCTGTGTCAGAGTTGGGTTGGAGGAGAGC  300

seq1  CTAAGCCTGAGCTTGTAATAAAGAAACCCTAAGGCTATTACATCGGAGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTGAGCTTGTAATAAAGAAACCCTAAGGCTATTACATCGGAGAC  350

seq1  GGTTCCTTGGTGGTTTTTTTTTTTTGTTGTTGTTTGTTTGTTTTTTTTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTGGTGGTTTTTTTTTTTTGTTGTTGTTTGTTTGTTTTTTTTTT  400

seq1  GGGGGGGAGGGGTGTTCATGAACCCTTCCTGGCACATTTTGCTGTGAACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGAGGGGTGTTCATGAACCCTTCCTGGCACATTTTGCTGTGAACC  450

seq1  CTTCCCGGCACAACAGTTGGGTGTGGGATGGAGAAAGGCTCTCTATGCAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCGGCACAACAGTTGGGTGTGGGATGGAGAAAGGCTCTCTATGCAG  500

seq1  CCCAGGGCCTCCACATCTTAATCCCCCTGCTTCGGCTTCTAGGTGTGCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCTCCACATCTTAATCCCCCTGCTTCGGCTTCTAGGTGTGCAG  550

seq1  CTTCATGCCCAGTTTGTAACTTCTGTGTTCTTGCATTTAGTCCTAAAAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCCCAGTTTGTAACTTCTGTGTTCTTGCATTTAGTCCTAAAAGC  600

seq1  ACCACCTTGACTTCTGTTCAAAAATATGTTTTCCAGGAAAAGAAATGACG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTGACTTCTGTTCAAAAATATGTTTTCCAGGAAAAGAAATGACG  650

seq1  TAGGAAGGACTGAATCAACCACCCAGGACACACAGCAAGAGAGTGGCAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGACTGAATCAACCACCCAGGACACACAGCAAGAGAGTGGCAAA  700

seq1  GTTGACTTTGGACCTAAGCAGAATGGCTACAGAATTC  731
      |||||||||||||||||||||||||||||||||||||
seq2  GTTGACTTTGGACCTAAGCAGAATGGCTACAGAATTC  737