BAC Information

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BAC

Clone NameB6Ng01-173O05
Chromosome9 (Build37)
Map Location 31,093,661 - 31,094,688
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539
Downstream genePrdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173O05.bB6Ng01-173O05.g
ACCGA002116GA002117
length1,1521,160
definitionB6Ng01-173O05.b B6Ng01-173O05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctactgtggacaggcctcaaacccaagcacaaagcagttggtt
actgtcataacggtcatacactattgcacagtggatacagcttgcctggg
aggttggtagtatagcatgcagaacctacagctgaggaaggctgttatta
atgacttttctcccctagtggcctacaaagtaccctatagcaccttgaca
gctagtcactgagatgaagcttccagcccagtgcagccttgacttctcat
gtcctggaagcaaagtttatagtctatctggctagctttgtatgtcagca
ctatgtgcagaagtgcccttggaggccggaagagagtgtttgatctcctg
gaattggagttagggatgattgtgagccatggtgtgggtgctgggaacca
ggccctggttctctgcaagagcaggaaacactttcttttttctttttaat
gatttatttatgtatgtgagtacactgtagctgtcttcagacacaccaat
agagggcattggatcccattacagatggctgtgagccacaatgtggttgc
tgggaattgaactcaggacctctagaagagcagtgagtgctcctaaccgc
tgagccatctctccagcccagtaagcactttctttaaaaaacaaaacaaa
taaaaatcaaaagtctttttattgattcttttgtgaatttcgcatcatgt
accccaaatcccacttccccatctcttcatatgtgccctctgcctttgca
aactccccctaaaagaaaacaaactaaaatgaagtaagataaagtaacga
aagaaacaaatggcagattagtgccagggcttgctctcctatgctcacac
ccttgggatggctccccagggcctgctctcttgtgctgcccaggtaaagt
ggggagtgttcttcagagtgttacagtcagcaaggggcaaagcagctctg
tgcaggccatggtgcatggacacagaaccctgcttgtcacagggccacgg
accaggcattgccctcagctgccacgtggggcaggactccatcattggct
tcagatgaactttgtagcttatcactcaggctgtttcctcatgctttgac
ttcttcaattctgcctcccttcattgtaccaaaatcgtctcgcttctctt
tc
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcagatgacagc
aaatgctggcgaggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaggcgtgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactactggaggatcccgaaatacctctcctgggc
atatatccagaagatgtcccaaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagacaa
atggatggacctggagagcatcatcctgagtgaggtaactcaatcacaaa
agaactcacatgatatgtactcgctgataagtggatattagcccagaaac
ttagaatacctaagatataagataaaatttgcgaaacgcatgaaactcgg
aaagaacgaagaccaaggtgtggatactttgccccttcttggaattgaga
gcaaggcacccatggaaggagctacagagacagagtttggagctgagaca
aaaggatggaccatctagaggctgccatacccggggatccatcccataat
cagcctccaaacgctgacaccattgcatacactggaaagattttgctgaa
ggacccagatatagctgtctctttgtgaggctatgctggggcctagcaaa
acatagaagttggatgatcaacagtccagcttatttggatggatcacagg
gcccccaaatggaggaggctgaaggaaggtacccaaggaacctggggggg
tatcctgcaaaccctaggtagaacaaccaataatgaacctaaaccagtat
ccccttgagagctcatgctctctagtctgcaatttgttatccgaaagaat
ggccctgtgtctagctcatccagtgtaaaaagagaaaggcccatttgggt
ccgtgtggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31093661_31094688
seq2: B6Ng01-173O05.b_163_1192

seq1  AACCTACAGCTGAGGAAGGCTGTTATTAATGACTTTTCTCCCCTAGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACAGCTGAGGAAGGCTGTTATTAATGACTTTTCTCCCCTAGTGGC  50

seq1  CTACAAAGTACCCTATAGCACCTTGACAGCTAGTCACTGAGATGAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTACCCTATAGCACCTTGACAGCTAGTCACTGAGATGAAGCTT  100

seq1  CCAGCCCAGTGCAGCCTTGACTTCTCATGTCCTGGAAGCAAAGTTTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAGTGCAGCCTTGACTTCTCATGTCCTGGAAGCAAAGTTTATAG  150

seq1  TCTATCTGGCTAGCTTTGTATGTCAGCACTATGTGCAGAAGTGCCCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGGCTAGCTTTGTATGTCAGCACTATGTGCAGAAGTGCCCTTGG  200

seq1  AGGCCGGAAGAGAGTGTTTGATCTCCTGGAATTGGAGTTAGGGATGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGGAAGAGAGTGTTTGATCTCCTGGAATTGGAGTTAGGGATGATTG  250

seq1  TGAGCCATGGTGTGGGTGCTGGGAACCAGGCCCTGGTTCTCTGCAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATGGTGTGGGTGCTGGGAACCAGGCCCTGGTTCTCTGCAAGAGC  300

seq1  AGGAAACACTTTCTTTTTTCTTTTTAATGATTTATTTATGTATGTGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACACTTTCTTTTTTCTTTTTAATGATTTATTTATGTATGTGAGTA  350

seq1  CACTGTAGCTGTCTTCAGACACACCAATAGAGGGCATTGGATCCCATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGCTGTCTTCAGACACACCAATAGAGGGCATTGGATCCCATTAC  400

seq1  AGATGGCTGTGAGCCACAATGTGGTTGCTGGGAATTGAACTCAGGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTGTGAGCCACAATGTGGTTGCTGGGAATTGAACTCAGGACCTC  450

seq1  TAGAAGAGCAGTGAGTGCTCCTAACCGCTGAGCCATCTCTCCAGCCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGCAGTGAGTGCTCCTAACCGCTGAGCCATCTCTCCAGCCCAGT  500

seq1  AAGCACTTTCTTTAAAAAACAAAACAAATAAAAATCAAAAGTCTTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTCTTTAAAAAACAAAACAAATAAAAATCAAAAGTCTTTTTAT  550

seq1  TGATTC-TTTGTGAATTTCGCATCATGTACCCC-AATCCCACTTCCCCAT  598
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TGATTCTTTTGTGAATTTCGCATCATGTACCCCAAATCCCACTTCCCCAT  600

seq1  CTCTTCATATGTGCCCTCTGCCTTTGCAAACTCCCCCTAAAAGAAAACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATATGTGCCCTCTGCCTTTGCAAACTCCCCCTAAAAGAAAACAA  650

seq1  ACTAAAATGAAGTAAGATAAAGTAACGAAAGAAACAAATGGCAGATTAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATGAAGTAAGATAAAGTAACGAAAGAAACAAATGGCAGATTAGT  700

seq1  GCCAGGGCTTGCTCTCCTATGCTCACACCCTTGGGATGGCTCCCCAGGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCTTGCTCTCCTATGCTCACACCCTTGGGATGGCTCCCCAGGGC  750

seq1  CTGCTCTCTTGTGCTGCCCAGGTAAAGTGGGGAGTGTTCTTCAGAGTGGT  798
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGCTCTCTTGTGCTGCCCAGGTAAAGTGGGGAGTGTTCTTCAGAGTGTT  800

seq1  ACAGTCAGCAAGGGGCAAGGCCAGCTCTGTGCAGGCCATGG-GCATTGAC  847
      |||||||||||||||||| | |||||||||||||||||||| |||| |||
seq2  ACAGTCAGCAAGGGGCAAAG-CAGCTCTGTGCAGGCCATGGTGCATGGAC  849

seq1  ACAGAACCCTGC-TGTCACAGGGCCACGGACCCAGGCATTGCCCTCAGCT  896
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  ACAGAACCCTGCTTGTCACAGGGCCACGGA-CCAGGCATTGCCCTCAGCT  898

seq1  GCAGCGTGGGCCAGGACTCCATCA-TGGCTTCAGATG-ACATTGTAGCTA  944
      ||  |||||| ||||||||||||| |||||||||||| || |||||||| 
seq2  GCCACGTGGGGCAGGACTCCATCATTGGCTTCAGATGAACTTTGTAGCTT  948

seq1  TTCACATCAGGCTG-TTCCTCACTGCCTTTGAC-TCTTCAATTCTGCCTC  992
       |||| |||||||| ||||||| || ||||||| ||||||||||||||||
seq2  ATCAC-TCAGGCTGTTTCCTCA-TG-CTTTGACTTCTTCAATTCTGCCTC  995

seq1  CCTCCATTGTACCCCAAACTGTTCT-GCTTCTCTTTC  1028
      ||| |||||||  ||||| |  ||| |||||||||||
seq2  CCTTCATTGTA--CCAAAATCGTCTCGCTTCTCTTTC  1030