BAC Information

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BAC

Clone NameB6Ng01-174I23
Chromosome9 (Build37)
Map Location 28,115,517 - 28,295,383
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneIgsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174I23.bB6Ng01-174I23.g
ACCGA002609GA002610
length294845
definitionB6Ng01-174I23.b B6Ng01-174I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,115,517 - 28,115,810)(28,294,818 - 28,295,383)
sequence
tttatactgctgactctccaggactggtgaggaggagctgcacaatgcac
tggctgactctaaacacaatcagctctgcctacctccctcttcactaccc
ggtcatcaggcttcaaagaaagccatgctttctgcatggtccaagggcat
atctgaatggagctgggcattctgggtgttggggttgaacagagtattcc
tagttatagtttctttgtcttgatttccaaggaaatgagagaaggaaaga
gagtggggagggagagacacagagagagtgggagagagatgggg

gaattcatcccctgaatatgtttgttgcacagcctgagaatcaccctggc
tctgggcaatgacaaaagcacaagatgaggtaagattcactttctggatt
ggacttccctgatggaccactgtggtctgtaatgccactggaggtcatgt
tggtgtgtgtggtctctgctactttcccgggtcatgatgaaggttaagat
ccatgtggatgtacacaatctgtactgctgctgactgatgctttgctgac
attcttgggctttgctgccataagggtcatgttgatgtgagtggcatctc
tggctatgttaagacccatggtccatgtaaccactggtggccatgaattg
gttggtgtttggatactgttgggagccatgctgatgtctgtcgcttgtta
ccacaaaggactatacagatgtctatggcccagtctgccacctgaagcca
tactagtgtcactgggcagtgctgggctgatcccacccttgtcctgctgc
tgctagctcttcacagttgatggtttctggcaaaggtgcaagtgaagaaa
gactcaccttccctagtgggctgacctctaggagtttgaccatgctccag
tgtgtgtgtgaacaacaacaacaacaacaacaacaacaacaaatgaactc
tctcttttcctttcttcctttttttggattggggagttgggccacaggag
agggggccagacttgagaggacagggaaagtgtgtgatatcagggtatga
ggcttcccaaaaaaacagtaatctgctttttttttttcttgtcatcaaca
tgtggacatttttcccctaaagggattcctacacaaacagccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28115517_28115810
seq2: B6Ng01-174I23.b_48_341

seq1  TTTATACTGCTGACTCTCCAGGACTGGTGAGGAGGAGCTGCACAATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGCTGACTCTCCAGGACTGGTGAGGAGGAGCTGCACAATGCAC  50

seq1  TGGCTGACTCTAAACACAATCAGCTCTGCCTACCTCCCTCTTCACTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGACTCTAAACACAATCAGCTCTGCCTACCTCCCTCTTCACTACCC  100

seq1  GGTCATCAGGCTTCAAAGAAAGCCATGCTTTCTGCATGGTCCAAGGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCAGGCTTCAAAGAAAGCCATGCTTTCTGCATGGTCCAAGGGCAT  150

seq1  ATCTGAATGGAGCTGGGCATTCTGGGTGTTGGGGTTGAACAGAGTATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATGGAGCTGGGCATTCTGGGTGTTGGGGTTGAACAGAGTATTCC  200

seq1  TAGTTATAGTTTCTTTGTCTTGATTTCCAAGGAAATGAGAGAAGGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAGTTTCTTTGTCTTGATTTCCAAGGAAATGAGAGAAGGAAAGA  250

seq1  GAGTGGGGAGGGAGAGACACAGAGAGAGTGGGAGAGAGATGGGG  294
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGAGGGAGAGACACAGAGAGAGTGGGAGAGAGATGGGG  294


seq1: chr9_28294818_28295383
seq2: B6Ng01-174I23.g_338_911 (reverse)

seq1  AAGGGCTGTTTGTGTA-GAAT-CCTTTAGGGG-AAAATGTCCACATGCTG  47
      |||||||||||||||| |||| |||||||||| |||||||||||||| ||
seq2  AAGGGCTGTTTGTGTAGGAATCCCTTTAGGGGAAAAATGTCCACATGTTG  50

seq1  ATGACAAG--AAAAAAAAAGCAGATTACTG-TTTTTTGGGGAGCCTCATA  94
      ||||||||  |||||||||||||||||||| ||||||||| |||||||||
seq2  ATGACAAGAAAAAAAAAAAGCAGATTACTGTTTTTTTGGGAAGCCTCATA  100

seq1  CCCTGATATCACACAC-TTCCCTGTCCTCTCATGTCTGGCCCCCTCTCCT  143
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CCCTGATATCACACACTTTCCCTGTCCTCTCAAGTCTGGCCCCCTCTCCT  150

seq1  GTGGCCCAACTCCCCAATCC-AAAAAAGGAAGAAAGGAAAAGAGAGAGTT  192
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGGCCCAACTCCCCAATCCAAAAAAAGGAAGAAAGGAAAAGAGAGAGTT  200

seq1  CATTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCACACACACACTGGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCACACACACACTGGA  250

seq1  GCATGGTCAAACTCCTAGAGGTCAGCCCACTAGGGAAGGTGAGTCTTTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCAAACTCCTAGAGGTCAGCCCACTAGGGAAGGTGAGTCTTTCT  300

seq1  TCACTTGCACCTTTGCCAGAAACCATCAACTGTGAAGAGCTAGCAGCAGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCACCTTTGCCAGAAACCATCAACTGTGAAGAGCTAGCAGCAGC  350

seq1  AGGACAAGGGTGGGATCAGCCCAGCACTGCCCAGTGACACTAGTATGGCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGGGTGGGATCAGCCCAGCACTGCCCAGTGACACTAGTATGGCT  400

seq1  TCAGGTGGCAGACTGGGCCATAGACATCTGTATAGTCCTTTGTGGTAACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGCAGACTGGGCCATAGACATCTGTATAGTCCTTTGTGGTAACA  450

seq1  AGCGACAGACATCAGCATGGCTCCCAACAGTATCCAAACACCAACCAATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACAGACATCAGCATGGCTCCCAACAGTATCCAAACACCAACCAATT  500

seq1  CATGGCCACCAGTGGTTACATGGACCATGGGTCTTAACATAGCCAGAGAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCACCAGTGGTTACATGGACCATGGGTCTTAACATAGCCAGAGAT  550

seq1  GCCACTCACATCAACATGACCCTT  566
      ||||||||||||||||||||||||
seq2  GCCACTCACATCAACATGACCCTT  574


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