BAC Information

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BAC

Clone NameB6Ng01-174L15
Chromosome9 (Build37)
Map Location 99,771,153 - 99,940,608
singlet/doubletdoublet
Overlap geneSox14, LOC667456, 4930519F24Rik
Upstream geneLOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
Downstream geneLOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174L15.bB6Ng01-174L15.g
ACCGA002723GA002724
length763699
definitionB6Ng01-174L15.b B6Ng01-174L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,771,153 - 99,771,912)(99,940,047 - 99,940,608)
sequence
gaattcaaatgactcgaaattcattgtccacttggaccatggtgacgagg
cctgaaccgagaaggggcagaagggaacgataatccgccaagtcagagct
ggctccaccgcttgccaagttttcagggttctggcagcccgttctctctc
cagagaacctgccgggccaggaggagttcgtgcaggtggcgcgatgcggt
gaaagtccctaggctctacctggaccgaattatcatcctgctttggatca
gtgaagattcctggaggttgggtggcttcggctttaaaaagcaaacctta
aggagtctcaggtgtcagtcactcacaactcagtgtgttctactcgaagt
agccgaagtagccggccttcttcatctgtaaagttaggtttcgtaagaaa
attgacccttgaacaggaaggccagaaactggaagggaataaagtttggg
gagtaggactcaaataagagaaaccacacacacacacacacacacacaca
cacacacacacacacgaaccgcgaagttttgtggaggccagaaggtgaag
tgaggcaacatgcctaatctctcaaaagtctggaccagtgaaccctttga
gacagaccgccgccgccaaaattttagaatgaaaacccagctaaaactcg
aactagcgggagccgccagctgccgtccggagcgcacatggtccagccct
aggaaaccttagcgggaggagcggcgggtgcacaggcgggcgacgcgcaa
gacagaaaaggat
gaattcagtatatgtcttggtgtgactggcttattctgctcatcataatg
tccttgagtctcactgatgttgtagtatgtcaggataagtaacattccgt
tttatacaggtgccacattgcttatcagacacaaatgaatgagttcttta
ctcgatatatgatttccaaatatttccctctcctcccatgtgttaccttt
tacctctgctaactgtgtgctcattttcttaaattcttttaatctgaata
ttttttaagaatagaatttagaagtcattcttttttttatgtgttataat
atgatttttttcctcttttttttattaggtattttcctcgtttacatttc
caatgctatcccaaaagtcccccataccaacccccccaatcccctatcca
cccactccccctttttggccctggcgttcccctgtactggggcatataaa
gtttgcaagtccaaagggcctctctttccagtgatggctgactaggccat
ctcttgatacatatgcagctagagacaagagctccagggtactggttagt
tcataatgtttgttctttacttgatattcaaatccaatgtttttggccgt
ccataatttgtaaacaaaatcatattcattggataatgttgagagagggt
attatgtgcccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99771153_99771912
seq2: B6Ng01-174L15.b_38_800

seq1  GAATTCAAATGACTCGAAATTCATTGTCCACTTGGACAATGGTGACGAGG  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAATTCAAATGACTCGAAATTCATTGTCCACTTGGACCATGGTGACGAGG  50

seq1  CCTGAACCGAGAAGGGGCAGAAGGGAACGATAATCCGCCAAGTCAGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCGAGAAGGGGCAGAAGGGAACGATAATCCGCCAAGTCAGAGCT  100

seq1  GGCTCCACCGCTTGCCAAGTTTTCAGGGTTCTGGCAGCCCGTTCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCACCGCTTGCCAAGTTTTCAGGGTTCTGGCAGCCCGTTCTCTCTC  150

seq1  CAGAGAACCTGCCGGGCCAGGAGGAGTTCGTGCAGGTGGCGCGATGCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACCTGCCGGGCCAGGAGGAGTTCGTGCAGGTGGCGCGATGCGGT  200

seq1  GAAAGTCCCTAGGCTCTACCTGGACCGAATTATCATCCTGCTTTGGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCCTAGGCTCTACCTGGACCGAATTATCATCCTGCTTTGGATCA  250

seq1  GTGAAGATTCCTGGAGGTTGGGTGGCTTCGGCTTTAAAAAGCAAACCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATTCCTGGAGGTTGGGTGGCTTCGGCTTTAAAAAGCAAACCTTA  300

seq1  AGGAGTCTCAGGTGTCAGTCACTCACAACTCAGTGTGTTCTACTCGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTCAGGTGTCAGTCACTCACAACTCAGTGTGTTCTACTCGAAGT  350

seq1  AGCCGAAGTAGCCGGCCTTCTTCATCTGTAAAGTTAGGTTTCGTAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGAAGTAGCCGGCCTTCTTCATCTGTAAAGTTAGGTTTCGTAAGAAA  400

seq1  ATTGACCCTTGAACAGGAAGGCCAGAAACTGGAAGGGAATAAAGTTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCCTTGAACAGGAAGGCCAGAAACTGGAAGGGAATAAAGTTTGGG  450

seq1  GAGTAGGACTCAAATAAGAGAAACCACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGACTCAAATAAGAGAAACCACACACACACACACACACACACACA  500

seq1  CACACACACACACACGAACCGCGAAGTTTTGTGGAGGCCAGAAGGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACGAACCGCGAAGTTTTGTGGAGGCCAGAAGGTGAAG  550

seq1  TGAGGCAACATGCCTAATCTCTCAAAAGTCTGGACCAGTGAACCC-TTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGAGGCAACATGCCTAATCTCTCAAAAGTCTGGACCAGTGAACCCTTTGA  600

seq1  GACAGACCGCCGCCGCCAAAATTTTAGAATGAAAACCCAGCTAAAACTCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACCGCCGCCGCCAAAATTTTAGAATGAAAACCCAGCTAAAACTCG  650

seq1  AACTAGCGGGAGCCGCCAGCTGCCGTCCGGAGCGCACATGGTCCAGCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCGGGAGCCGCCAGCTGCCGTCCGGAGCGCACATGGTCCAGCCCT  700

seq1  AGGAAACCTTAGC-GGAGGAGCGGCGGGTGCACAGGCGGGCGACGCGCAA  748
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGAAACCTTAGCGGGAGGAGCGGCGGGTGCACAGGCGGGCGACGCGCAA  750

seq1  GACAG-AAAGGAT  760
      ||||| |||||||
seq2  GACAGAAAAGGAT  763

seq1: chr9_99940047_99940608
seq2: B6Ng01-174L15.g_201_765 (reverse)

seq1  CACACAGACACACACACACACACACACACACACACACGGGCACATAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACACACACACACACACACACACACACACACGGGCACATAATAC  50

seq1  CCTCTCTCAACATTATCCAATG-ATATGATTTTG-TTACAAATTATGGAC  98
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  CCTCTCTCAACATTATCCAATGAATATGATTTTGTTTACAAATTATGGAC  100

seq1  GGCCAAAAACATTGGATTTGAATATCAAGTAAAGAAC-AACATTATGAAC  147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCCAAAAACATTGGATTTGAATATCAAGTAAAGAACAAACATTATGAAC  150

seq1  TAACCAGTACCCTGGAGCTCTTGTCTCTAGCTGCATATGTATCAAGAGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTACCCTGGAGCTCTTGTCTCTAGCTGCATATGTATCAAGAGAT  200

seq1  GGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCTTTGGACTTGCAAACTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCTTTGGACTTGCAAACTT  250

seq1  TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTG  300

seq1  GATAGGGGATTGGGGGGGTTGGTATGGGGGACTTTTGGGATAGCATTGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGATTGGGGGGGTTGGTATGGGGGACTTTTGGGATAGCATTGGA  350

seq1  AATGTAAACGAGGAAAATACCTAATAAAAAAAAGAGGAAAAAAATCATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAACGAGGAAAATACCTAATAAAAAAAAGAGGAAAAAAATCATAT  400

seq1  TATAACACATAAAAAAAAGAATGACTTCTAAATTCTATTCTTAAAAAATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACATAAAAAAAAGAATGACTTCTAAATTCTATTCTTAAAAAATA  450

seq1  TTCAGATTAAAAGAATTTAAGAAAATGAGCACACAGTTAGCAGAGGTAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTAAAAGAATTTAAGAAAATGAGCACACAGTTAGCAGAGGTAAA  500

seq1  AGGTAACACATGGGAGGAGAGGGAAATATTTGGAAATCATATATCGAGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACACATGGGAGGAGAGGGAAATATTTGGAAATCATATATCGAGTA  550

seq1  AAGAACTCATTCATT  562
      |||||||||||||||
seq2  AAGAACTCATTCATT  565