BAC Information

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BAC

Clone NameB6Ng01-174O17
Chromosome9 (Build37)
Map Location 30,066,699 - 30,267,843
singlet/doubletdoublet
Overlap geneSnx19
Upstream geneHnt
Downstream geneLOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174O17.bB6Ng01-174O17.g
ACCGA002866GA002867
length8731,082
definitionB6Ng01-174O17.b B6Ng01-174O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,066,699 - 30,067,295)(30,266,773 - 30,267,843)
sequence
gaattcaaaccacaagatggagcccatgcccaacactgcctggatggcca
ggaactagaagctgggtggctcagagacctaggatagaaccaaacactac
tgaacataaaaaagtgaaataatttctaatgatattcttctatactcata
gataggtgcctagaccaatcatcatcagaaaggcttcctctggcagctga
tatgatcagaagtagaggctcccacccaaatattaagtgaacccagggaa
accctgcagaagagggagacaaaggattgtaggagtcaggaatcagggtt
accaggagaacatggcccacaaaatcatcatagcagggctcatagagact
cacaaagactgaagcagcaaacacagaatctgcatgagtctgagctagtt
cctctgcatatatggtgtggttgttcagcttggggcgtttgtggaactcc
taacagtgggagcagggcagtctctgactcttgggagaatctatctcaga
ctcttgcctgctctaggtggcctttttctcctactggattgctttctcca
gttttgatatgagagtttgtgcctagtcttattgtatcttgttatgttat
gttctgttgatatcagctagaaacatgttctttactgaagggaaatggag
gagcagtagatctgagggagaggagaagtgggagacaggattgaaagaag
tgcagggagggggaggctatggtcgagatgttttgtatgaaaagaagaat
ggggaaataaaacggcatcctcattttaacaagaaaccccataaatattt
tatttggctttatcctaggttccctggaaaaactgagttcctgttgtttg
acttctttgatggggaaatgggg
gaattccaactcttccaagcaacctctgcatccatgtaacctttcctcat
ataagagagcgcctgggtacctcaggcatcttctgggtacctatcagaag
acaggagttagatatgtttgggtctatagtaatttatccagtgaggatag
gacctcatacttcactatggcaaggatgtcctctttgctctcttccacat
ggatttagcatgttcatgcacagatgtggggtgcaaacaacttttagtgt
gtaacacagcatgagcacatacaagtctgactacaattcttcaaatccaa
ggaatgcagggaagaagaaccaaagtccaaaacggtaaaactcagctcgt
ggtgagttgggaagctaaacatggcgaggcaaagcagaggaactgtcagt
ggggactggaacctccaagctagtgaagtggagtcactgggatgcagggc
aaagtttgagcacagagctggttagatggaggccccaagtcaagcccagg
aatgtctgaagcaagcctgtggcaaactggcagaaacagaaaaattcagg
tctacaaagggaggaggtcctagagcagatctcacaggtcgcatggatca
catgtgacttaaacctgttctttccagaattttcctcttgactagttttt
ttcctgtagctctgcttcatggacaatgaatactttcagtctagcagaga
aaaacagcaaagtgcaaaccaagaagactaccaccataactcctcctgcc
taatgtcatgttcctcagcactgtggctgcttcagtgtctagactgtcat
ctaaatccagtctctaagtcagtattacataggatgtatttcaaagccct
gtagattcagatatttttacccaaattattttgcctctcttggtgtctta
gatagaagccaagaccaggaagaatcttgaaacaaaagggatgagattcc
tcctcctcccgaagtcccctttcttcgtctgtaattttttctctaagttc
atatacccattcattttaaaaatttgccttgagatttttgttttaatgtg
aatggaatttttaacatgcatgcaatgtctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30066699_30067295
seq2: B6Ng01-174O17.b_310_919

seq1  GGGAGACAAAGGATTGTAGGAGTCAGGAATCAGGGTTACCAGGAGAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACAAAGGATTGTAGGAGTCAGGAATCAGGGTTACCAGGAGAACAT  50

seq1  GGCCCACAAAATCATCATAGCAGGGCTCATAGAGACTCACAAAGACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCACAAAATCATCATAGCAGGGCTCATAGAGACTCACAAAGACTGAA  100

seq1  GCAGCAAACACAGAATCTGCATGAGTCTGAGCTAGTTCCTCTGCATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAACACAGAATCTGCATGAGTCTGAGCTAGTTCCTCTGCATATAT  150

seq1  GGTGTGGTTGTTCAGCTTGGGGCGTTTGTGGAACTCCTAACAGTGGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTTGTTCAGCTTGGGGCGTTTGTGGAACTCCTAACAGTGGGAGC  200

seq1  AGGGCAGTCTCTGACTCTTGGGAGAATCTATCTCAGACTCTTGCCTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTCTCTGACTCTTGGGAGAATCTATCTCAGACTCTTGCCTGCTC  250

seq1  TAGGTGGCCTTTTTCTCCTACTGGATTGCTTTCTCCAGTTTTGATATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGCCTTTTTCTCCTACTGGATTGCTTTCTCCAGTTTTGATATGAG  300

seq1  AGTTTGTGCCTAGTCTTATTGTATCTTGTTATGTTATGTTCTGTTGATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGCCTAGTCTTATTGTATCTTGTTATGTTATGTTCTGTTGATAT  350

seq1  CAGCTAGAAACATGTTCTTTACTGAAGGGAAATGGAGGAGCAGTAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAAACATGTTCTTTACTGAAGGGAAATGGAGGAGCAGTAGATCT  400

seq1  GAGGGAGAGGAGAAGTGGGAGACAGGATTGAAAGAAGTGCAGGGA-GGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGGAGAGGAGAAGTGGGAGACAGGATTGAAAGAAGTGCAGGGAGGGGG  450

seq1  AGGCTATGGTCGAGATGTTTTGTATG-AAAGAAGAATGGGGAAAT-AAAC  497
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  AGGCTATGGTCGAGATGTTTTGTATGAAAAGAAGAATGGGGAAATAAAAC  500

seq1  GGCATCCTCA-TTTAACAAG-AACCCCATAAATATTT--ATTGGC-TTAT  542
      |||||||||| ||||||||| ||||||||||||||||   ||||| ||||
seq2  GGCATCCTCATTTTAACAAGAAACCCCATAAATATTTTATTTGGCTTTAT  550

seq1  CCTAGGTTCCCTGG-AAAACTGAGTTCCTGT--GTTGACT--CTTGATGG  587
      |||||||||||||| ||||||||||||||||   ||||||   |||||||
seq2  CCTAGGTTCCCTGGAAAAACTGAGTTCCTGTTGTTTGACTTCTTTGATGG  600

seq1  GGAAATGGGG  597
      ||||||||||
seq2  GGAAATGGGG  610

seq1: chr9_30266773_30267843
seq2: B6Ng01-174O17.g_69_1150 (reverse)

seq1  ACAGACA-TGCATGCATG-TAAAATACCCATACACATAAAACAAAAAATC  48
      ||||||| |||||||||| |||||   |||| ||||| |||  |||||||
seq2  ACAGACATTGCATGCATGTTAAAAATTCCATTCACATTAAAACAAAAATC  50

seq1  TCAAGGC-AATTTTTAAAATGAATGGGTATATGAACTTTAGAG-AAAAAT  96
      ||||||| |||||||||||||||||||||||||||| |||||| ||||||
seq2  TCAAGGCAAATTTTTAAAATGAATGGGTATATGAAC-TTAGAGAAAAAAT  99

seq1  TACAGAGGAAAAGAAAGGGGACTTTGGGA-GAG--AGAATCTCATCCCTT  143
      |||||| |  |||||||||||||| |||| |||   ||||||||||||||
seq2  TACAGACG--AAGAAAGGGGACTTCGGGAGGAGGAGGAATCTCATCCCTT  147

seq1  TTGTTTTCAAGATTC-TCCTGGTCTTGGCTTCTATCT-AGACACCAAGAG  191
      ||| ||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  TTG-TTTCAAGATTCTTCCTGGTCTTGGCTTCTATCTAAGACACCAAGAG  196

seq1  AGGC-AAATTATTTGG--TAAAATATCTGAATCTACA-GGCTTTGAAATA  237
      |||| |||| ||||||   |||||||||||||||||| ||||||||||||
seq2  AGGCAAAATAATTTGGGTAAAAATATCTGAATCTACAGGGCTTTGAAATA  246

seq1  CATCCTATGTAATACTGACTTAGAGACTGGA-TTAGATGACAGTCTAGAC  286
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATCCTATGTAATACTGACTTAGAGACTGGATTTAGATGACAGTCTAGAC  296

seq1  ACTGAAGCAGCCACAGTGCCTGAGGAACATGACATTAGGCAGGAGGAGTT  336
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACTGAAGCAGCCACAGTG-CTGAGGAACATGACATTAGGCAGGAGGAGTT  345

seq1  ATGGTGGTAGTCTTCTTGGTTTGCACTTTGCTGTTTTTCTCTGCTAGACT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTAGTCTTCTTGGTTTGCACTTTGCTGTTTTTCTCTGCTAGACT  395

seq1  G-AAGTATTCATTGTCCATGAAGCAGAGCTACAGG-AAAAAACTAGTCAA  434
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAAGTATTCATTGTCCATGAAGCAGAGCTACAGGAAAAAAACTAGTCAA  445

seq1  GAGGAAAATTCTGGAAAGAACAGGTTTAAGTCACATGTGATCCATGCGAC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAATTCTGGAAAGAACAGGTTTAAGTCACATGTGATCCATGCGAC  495

seq1  CTGTGAGATCTGCTCTAGGACCTCCTCCCTTTGTAGACCTGAATTTTTCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGATCTGCTCTAGGACCTCCTCCCTTTGTAGACCTGAATTTTTCT  545

seq1  GTTTCTGCCAGTTTGCCACAGGCTTGCTTCAGACATTCCTGGGCTTGACT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCCAGTTTGCCACAGGCTTGCTTCAGACATTCCTGGGCTTGACT  595

seq1  TGGGGCCTCCATCTAACCAGCTCTGTGCTCAAACTTTGCCCTGCATCCCA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCTCCATCTAACCAGCTCTGTGCTCAAACTTTGCCCTGCATCCCA  645

seq1  GTGACTCCACTTCACTAGCTTGGAGGTTCCAGTCCCCACTGACAGTTCCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCACTTCACTAGCTTGGAGGTTCCAGTCCCCACTGACAGTTCCT  695

seq1  CTGCTTTGCCTCGCCATGTTTAGCTTCCCAACTCACCACGAGCTGAGTTT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGCCTCGCCATGTTTAGCTTCCCAACTCACCACGAGCTGAGTTT  745

seq1  TACCGTTTTGGACTTTGGTTCTTCTTCCCTGCATTCCTTGGATTTGAAGA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGTTTTGGACTTTGGTTCTTCTTCCCTGCATTCCTTGGATTTGAAGA  795

seq1  ATTGTAGTCAGACTTGTATGTGCTCATGCTGTGTTACACACTAAAAGTTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTCAGACTTGTATGTGCTCATGCTGTGTTACACACTAAAAGTTG  845

seq1  TTTGCACCCCACATCTGTGCATGAACATGCTAAATCCATGTGGAAGAGAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACCCCACATCTGTGCATGAACATGCTAAATCCATGTGGAAGAGAG  895

seq1  CAAAGAGGACATCCTTGCCATAGTGAAGTATGAGGTCCTATCCTCACTGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGACATCCTTGCCATAGTGAAGTATGAGGTCCTATCCTCACTGG  945

seq1  ATAAATTACTATAGACCCAAACATATCTAACTCCTGTCTTCTGATAGGTA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTACTATAGACCCAAACATATCTAACTCCTGTCTTCTGATAGGTA  995

seq1  CCCAGAAGATGCCTGAGGTACCCAGGCGCTCTCTTATATGAGGAAAGGTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGATGCCTGAGGTACCCAGGCGCTCTCTTATATGAGGAAAGGTT  1045

seq1  ACATGGATGCAGAGGTTGCTTGGAAGAGTTGGAATTC  1071
      |||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGCAGAGGTTGCTTGGAAGAGTTGGAATTC  1082