BAC Information

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BAC

Clone NameB6Ng01-176J01
Chromosome9 (Build37)
Map Location 17,288,681 - 17,470,348
singlet/doubletdoublet
Overlap geneLOC100040090
Upstream geneEG434373, LOC100040074
Downstream geneLOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J01.bB6Ng01-176J01.g
ACCGA004069GA004070
length8891,091
definitionB6Ng01-176J01.b B6Ng01-176J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,469,462 - 17,470,348)(17,288,681 - 17,289,752)
sequence
gaattctgtattctgaaaataaaacacatcaaaaacaaacaaacaaatta
aaaacagcaaataaggactacaaaattaaaactttcatgctgtttaaacc
actatacatctttgagaagatgttacagcagaagtaatagagggatgcag
tacctgccctgtttccagcattcatgggataaacactgagagaagttcag
gaagataataaacatgaggcaaaagatataggaatgctacaaataaaata
taagaagtacacaagcaggttcacactcagagttctgttgtcttcaaaca
ataagtgtgtatgttaggtctggaaaagtgccagtggtcatgatggaata
aaaataacagagatggtgttgaagagaagtgaggagccatgcttaatgaa
agttaaccatggatcaagaaacagtttcacaagacaagagaaacagagtg
ttaggtgagtgatgattgtgggcaagaggaaaacatcccagcagtcttat
aggatctcttgcctcattttcttgaaagaatggacagtaaaaatcatggt
ctgcagtactgttgatacttgttagatgtcaaggatgctatagtgagcag
gctaataaagactgatgctaggctgaggatgttgtaggattagatgacat
tatacataagtgtatgtcatataccttggagaatgcaaaatattctctag
gggaggagtttaattgattgatatccacaaatatataattgttaaaaact
actcaattaagtgaaataattcaggaagaagttttctgatcacagtttat
catggtggaaaagtcatcagggtgtgaggtactacattcaacatcaagga
gagagacaggaagagagaaagggatgagggggggagagg

gaattcacatttttttttgatgaagataactttaaaaatggactatttac
atttttagtgggcagcctttaaaatgtctctgacttcttcccagtatccc
atgtaccctccatcaaagtaggaaggatagacatgcatttctcatttctc
tcaaataggaagtagagtgacaagttcacgatcatgttaagtcatgtatt
caggcttctttccctgttggccacctcttgttgtctcttctcttatttcc
taattctcggaaagaaaatgctcatgctgttagtaaccaaaaggggaagt
ttatttgttgccaaaagactgagttatttgttgtgatgttagtgaaatct
gaacatatgaagagatagggagtgagacagaatcatccctcaaccgtacc
aagttgtctgccagtgtagtcttgtaaaatcctatgatccagaagatccc
atccaaattatatccaaaactgttgacccagataacaaagcagattcttc
tatcacaggcataagcaattgcatctttatttttttttttttttttacac
aggtcacaatacaatgatctctgcatcctccaagtctctcacatggatac
tggactaggagcaagacattccaatatgtgttaacatatgaagctttagt
tagctcattcttttgttggacttgcagtggttttctgcaagaggctgtat
ggtatatacttactataccaacagtcgtatttattgcacattaaaataag
aatacctgctttagattaccttttacataaatgaaaagaaatcaaaaata
gacaactcatttttaagattctgactttaaggttttatattatgcataca
aataagcaaataaacaggaatagaagacttcctgtagtacaccataaaga
gatacattgcctaaattatattttctcaaaaaagacagtgaatgcagggg
ggtggaggggacaggctgatttctggctgggtagaataaggggtggccat
ggcaataatggcataaacatctccatgcaggcgaaaccattctgcgaggg
gttaggaccattctttggaaaatgtatacatagcatgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17469462_17470348
seq2: B6Ng01-176J01.b_43_931 (reverse)

seq1  CCTCT-CCCCCCTCATCCC-TTCTCTCTTCCTGTCTCTCTCCTTGATGTT  48
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCCCTCATCCCTTTCTCTCTTCCTGTCTCTCTCCTTGATGTT  50

seq1  GAATGTAGTACCTCACACCCTGATGACTTTTCCACCATGATAAACTGTGA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGTACCTCACACCCTGATGACTTTTCCACCATGATAAACTGTGA  100

seq1  TCAGAAAACTTCTTCCTGAATTATTTCACTTAATTGAGTAGTTTTTAACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAACTTCTTCCTGAATTATTTCACTTAATTGAGTAGTTTTTAACA  150

seq1  ATTATATATTTGTGGATATCAATCAATTAAACTCCTCCCCTAGAGAATAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATTTGTGGATATCAATCAATTAAACTCCTCCCCTAGAGAATAT  200

seq1  TTTGCATTCTCCAAGGTATATGACATACACTTATGTATAATGTCATCTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCTCCAAGGTATATGACATACACTTATGTATAATGTCATCTAA  250

seq1  TCCTACAACATCCTCAGCCTAGCATCAGTCTTTATTAGCCTGCTCACTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAACATCCTCAGCCTAGCATCAGTCTTTATTAGCCTGCTCACTAT  300

seq1  AGCATCCTTGACATCTAACAAGTATCAACAGTACTGCAGACCATGATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTTGACATCTAACAAGTATCAACAGTACTGCAGACCATGATTTT  350

seq1  TACTGTCCATTCTTTCAAGAAAATGAGGCAAGAGATCCTATAAGACTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCCATTCTTTCAAGAAAATGAGGCAAGAGATCCTATAAGACTGCT  400

seq1  GGGATGTTTTCCTCTTGCCCACAATCATCACTCACCTAACACTCTGTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTTTTCCTCTTGCCCACAATCATCACTCACCTAACACTCTGTTTC  450

seq1  TCTTGTCTTGTGAAACTGTTTCTTGATCCATGGTTAACTTTCATTAAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTTGTGAAACTGTTTCTTGATCCATGGTTAACTTTCATTAAGCA  500

seq1  TGGCTCCTCACTTCTCTTCAACACCATCTCTGTTATTTTTATTCCATCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTCACTTCTCTTCAACACCATCTCTGTTATTTTTATTCCATCAT  550

seq1  GACCACTGGCACTTTTCCAGACCTAACATACACACTTATTGTTTGAAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTGGCACTTTTCCAGACCTAACATACACACTTATTGTTTGAAGAC  600

seq1  AACAGAACTCTGAGTGTGAACCTGCTTGTGTACTTCTTATATTTTATTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAACTCTGAGTGTGAACCTGCTTGTGTACTTCTTATATTTTATTTG  650

seq1  TAGCATTCCTATATCTTTTGCCTCATGTTTATTATCTTCCTGAACTTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTCCTATATCTTTTGCCTCATGTTTATTATCTTCCTGAACTTCTC  700

seq1  TCAGTGTTTATCCCATGAATGCTGGAAACAGGGCAGGTACTGCATCCCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTATCCCATGAATGCTGGAAACAGGGCAGGTACTGCATCCCTC  750

seq1  TATTACTTCTGCTGTAACATCTTCTCAAAGATGTATAGTGGTTTAAACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTCTGCTGTAACATCTTCTCAAAGATGTATAGTGGTTTAAACAG  800

seq1  CATGAAAGTTTTAATTTTGTAGTCCTTATTTGCTGTTTTTAATTTGTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTTTTAATTTTGTAGTCCTTATTTGCTGTTTTTAATTTGTTTG  850

seq1  TTTGTTTTTGATGTGTTTTATTTTCAGAATACAGAATTC  887
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGATGTGTTTTATTTTCAGAATACAGAATTC  889


seq1: chr9_17288681_17289752
seq2: B6Ng01-176J01.g_65_1155

seq1  GAATTCACATTTTTTTTTGATGAAGATAACTTTAAAAATGGACTATTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTTTTTTTGATGAAGATAACTTTAAAAATGGACTATTTAC  50

seq1  ATTTTTAGTGGGCAGCCTTTAAAATGTCTCTGACTTCTTCCCAGTATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTGGGCAGCCTTTAAAATGTCTCTGACTTCTTCCCAGTATCCC  100

seq1  ATGTACCCTCCATCAAAGTAGGAAGGATAGACATGCATTTCTCATTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCCTCCATCAAAGTAGGAAGGATAGACATGCATTTCTCATTTCTC  150

seq1  TCAAATAGGAAGTAGAGTGACAAGTTCACGATCATGTTAAGTCATGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGGAAGTAGAGTGACAAGTTCACGATCATGTTAAGTCATGTATT  200

seq1  CAGGCTTCTTTCCCTGTTGGCCACCTCTTGTTGTCTCTTCTCTTATTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCTTTCCCTGTTGGCCACCTCTTGTTGTCTCTTCTCTTATTTCC  250

seq1  TAATTCTCGGAAAGAAAATGCTCATGCTGTTAGTAACCAAAAGGGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCGGAAAGAAAATGCTCATGCTGTTAGTAACCAAAAGGGGAAGT  300

seq1  TTATTTGTTGCCAAAAGACTGAGTTATTTGTTGTGATGTTAGTGAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTGCCAAAAGACTGAGTTATTTGTTGTGATGTTAGTGAAATCT  350

seq1  GAACATATGAAGAGATAGGGAGTGAGACAGAATCATCCCTCAACCGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATATGAAGAGATAGGGAGTGAGACAGAATCATCCCTCAACCGTACC  400

seq1  AAGTTGTCTGCCAGTGTAGTCTTGTAAAATCCTATGATCCAGAAGATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCTGCCAGTGTAGTCTTGTAAAATCCTATGATCCAGAAGATCCC  450

seq1  ATCCAAATTATATCCAAAACTGTTGACCCAGATAACAAAGCAGATTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAATTATATCCAAAACTGTTGACCCAGATAACAAAGCAGATTCTTC  500

seq1  TATCACAGGCATAAGCAATTGCATCTTTATTTTTTTTTTTTTTTTTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGGCATAAGCAATTGCATCTTTATTTTTTTTTTTTTTTTTACAC  550

seq1  AGGTCACAATACAATGATCTCTGCATCCTCCAAGTCTCTCACATGGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACAATACAATGATCTCTGCATCCTCCAAGTCTCTCACATGGATAC  600

seq1  TGGACTAGGAGCAAGACATTCCAATATGTGTTAACATATGAAGCTTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTAGGAGCAAGACATTCCAATATGTGTTAACATATGAAGCTTTAGT  650

seq1  TAGCTCATTCTTTTGTTGGACTTGCAGTGGTTTTCTGCAAGAGGCTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATTCTTTTGTTGGACTTGCAGTGGTTTTCTGCAAGAGGCTGTAT  700

seq1  GGTATATACTTACTATACCAACAGTCGTATTTATTGCACATTAAAATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATACTTACTATACCAACAGTCGTATTTATTGCACATTAAAATAAG  750

seq1  AATACCTGCTTTAGATTACCTTTTACATAAATGAAAAGAAATCAAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGCTTTAGATTACCTTTTACATAAATGAAAAGAAATCAAAAATA  800

seq1  GACAACTCATTTTTAAGATTCTGACTTTAAGGTTTTATATTATGCATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTCATTTTTAAGATTCTGACTTTAAGGTTTTATATTATGCATACA  850

seq1  AATAAGCAAAATAAACAGGAATAGAAGACTTCCTGTAGTACACCATAAAG  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGC-AAATAAACAGGAATAGAAGACTTCCTGTAGTACACCATAAAG  899

seq1  AGATACATTGCCTAAATTATA-TTTCTCAAAAAAGACAAGTGAATGCA-G  948
      ||||||||||||||||||||| ||||||||||||||| |||||||||| |
seq2  AGATACATTGCCTAAATTATATTTTCTCAAAAAAGAC-AGTGAATGCAGG  948

seq1  GGGGTG--AGTGACAGGCTGATTTCTTGCT-GGTAG-ATAAGGGGTTGCC  994
      ||||||   | ||||||||||||||| ||| ||||| ||||||||| |||
seq2  GGGGTGGAGGGGACAGGCTGATTTCTGGCTGGGTAGAATAAGGGGTGGCC  998

seq1  ATGGCAATAATTGCAT-AACATCTCCATGCA-GCGAAACCA-TCTGCGAA  1041
      ||||||||||| |||| |||||||||||||| ||||||||| ||||||| 
seq2  ATGGCAATAATGGCATAAACATCTCCATGCAGGCGAAACCATTCTGCGAG  1048

seq1  GGGGTA-GAACATTCTTTTGAAAAT-----------ATGTTAT  1072
      ||| || || |||||||| ||||||           |||||||
seq2  GGGTTAGGACCATTCTTTGGAAAATGTATACATAGCATGTTAT  1091


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