BAC Information

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BAC

Clone NameB6Ng01-179H19
Chromosome9 (Build37)
Map Location 48,447,566 - 48,625,003
singlet/doubletdoublet
Overlap geneZbtb16
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt
Downstream geneHtr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H19.bB6Ng01-179H19.g
ACCGA006192GA006193
length1,010248
definitionB6Ng01-179H19.b B6Ng01-179H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,447,566 - 48,448,525)(48,624,756 - 48,625,003)
sequence
gaattcagggctttatatttgtgcattgtgtggttagtgtttgtcaactg
aacacaaattaaggtcatttggggggaagaaggaactatagggaatcaac
tccatgagattggcctgtgggcttgattaatgatggatgtgggaggacca
gtcacattttgagcagtgccacccctggggtaagaaagcaagctgaatga
gtcacagagagcaagccagtaagcattcctccatggtctttatttcagat
cctgcattgagttcctgccttagccttccccaatagactatgatttgtaa
ccaaaatatgtcctttgttcccccaacttgctattggtcctgttgtttga
gcccagcaacggaaaccaaactagaacacacattgactgcttctacctgc
tgagccatctccccagaccctctctgatctagtttgttttctgttccttt
gatgaaaatactgacccaaaccagcttggggaagaaaagatgttattgct
tctaacgagttaacagcacaatccagacttttataccctacactggcaat
tcccagcctccagaaaaaaaaagcactaaatatgtcaagaaacaggaaag
tgctatctgtaaaatgacaaggtctcagtggaaatagactttcagatgct
aaaattaatggaccaggactttaaagcccattatgaatgtgtttaaggag
ttagagaaaaggtgattttaatgagccacgaaaataaaatttttgacaga
aaaagttttttatcttatttttaaagaagtagaatgaaaatcttaatgtc
tgagatgaagagtttgcattatgacacttaacagccaggctgaaggtgtc
aaaataagaatcccatatacttggatacagtaatatagaagattatccca
gtcaagaaggattaaaagaatggggaaatttacaatttatggagtttttt
tacttcagaacttacttggagacagaacacagggtccattttgcctgaga
aagaaggaga
cttctttccagccttatcagggcctgcccaggcctgcttcccacttcctc
cttactagaatctgacttgagaactatttcaaacctttgtcactgagcag
gggtcaggtgtgttttggcatagggacttgagtttgccccttccccctcc
ccgaactcccagcctcttttctgtcaatctgagttgtcaaatgtctgtca
agtctatcgttggtgaggggactatctgtgttggggtggggtgggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48447566_48448525
seq2: B6Ng01-179H19.b_67_1049

seq1  GTGTGGTTAGTGTTTGTCAACTGAACACAAATTAAGGTCATTTGGGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTAGTGTTTGTCAACTGAACACAAATTAAGGTCATTTGGGGGGA  50

seq1  AGAAGGAACTATAGGGAATCAACTCCATGAGATTGGCCTGTGGGCTTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACTATAGGGAATCAACTCCATGAGATTGGCCTGTGGGCTTGAT  100

seq1  TAATGATGGATGTGGGAGGACCAGTCACATTTTGAGCAGTGCCACCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGGATGTGGGAGGACCAGTCACATTTTGAGCAGTGCCACCCCTG  150

seq1  GGGTAAGAAAGCAAGCTGAATGAGTCACAGAGAGCAAGCCAGTAAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGAAAGCAAGCTGAATGAGTCACAGAGAGCAAGCCAGTAAGCATT  200

seq1  CCTCCATGGTCTTTATTTCAGATCCTGCATTGAGTTCCTGCCTTAGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGGTCTTTATTTCAGATCCTGCATTGAGTTCCTGCCTTAGCCTT  250

seq1  CCCCAATAGACTATGATTTGTAACCAAAATATGTCCTTTGTTCCCCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATAGACTATGATTTGTAACCAAAATATGTCCTTTGTTCCCCCAAC  300

seq1  TTGCTATTGGTCCTGTTGTTTGAGCCCAGCAACGGAAACCAAACTAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTGGTCCTGTTGTTTGAGCCCAGCAACGGAAACCAAACTAGAAC  350

seq1  ACACATTGACTGCTTCTACCTGCTGAGCCATCTCCCCAGACCCTCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTGACTGCTTCTACCTGCTGAGCCATCTCCCCAGACCCTCTCTGA  400

seq1  TCTAGTTTGTTTTCTGTTCCTTTGATGAAAATACTGACCCAAACCAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTGTTTTCTGTTCCTTTGATGAAAATACTGACCCAAACCAGCTT  450

seq1  GGGGAAGAAAAGATGTTATTGCTTCTAACGAGTTAACAGCACAATCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAAAAGATGTTATTGCTTCTAACGAGTTAACAGCACAATCCAGA  500

seq1  CTTTTATACCCTACACTGGCAATTCCCAGCCTCCAGAAAAAAAAAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATACCCTACACTGGCAATTCCCAGCCTCCAGAAAAAAAAAGCACT  550

seq1  AAATATGTCAAGAAACAGGAAAGTGCTATCTGTAAAATGACAAGGTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTCAAGAAACAGGAAAGTGCTATCTGTAAAATGACAAGGTCTCA  600

seq1  GTGGAAATAGACTTTCAGATGCTAAAATTAATGGACCAGGACTTTAAAG-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGAAATAGACTTTCAGATGCTAAAATTAATGGACCAGGACTTTAAAGC  650

seq1  CCATTATGAATGTGTTTAAGGAGTTAGAGAAAAGGTGATTTTAATGAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATGAATGTGTTTAAGGAGTTAGAGAAAAGGTGATTTTAATGAGCC  700

seq1  ACGAAAATAAAA-TTTTGACAGAAAAAGTTTTTTATCTTA-TTTTAAAGA  747
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  ACGAAAATAAAATTTTTGACAGAAAAAGTTTTTTATCTTATTTTTAAAGA  750

seq1  AGTAGAATGAAAATC-TAATGTCTGAGATGAAGAGTTTGCAATATGACAC  796
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AGTAGAATGAAAATCTTAATGTCTGAGATGAAGAGTTTGCATTATGACAC  800

seq1  -TAACAG-CAGGCTGAAGGTGTCAAAATAAGAAT-CCATAAACTTGGATA  843
       |||||| |||||||||||||||||||||||||| ||||| |||||||||
seq2  TTAACAGCCAGGCTGAAGGTGTCAAAATAAGAATCCCATATACTTGGATA  850

seq1  CAGTAATATAG-AGATTAT-CCAGTC-AGAAGGAT--AAAGAAT-GGGAA  887
      ||||||||||| ||||||| |||||| ||||||||  ||||||| |||||
seq2  CAGTAATATAGAAGATTATCCCAGTCAAGAAGGATTAAAAGAATGGGGAA  900

seq1  ATTTACAA-TTATGGAG--TTTTTAC-TCAG-ACTTAC-TGGAGACAG-A  930
      |||||||| ||||||||  ||||||| |||| |||||| ||||||||| |
seq2  ATTTACAATTTATGGAGTTTTTTTACTTCAGAACTTACTTGGAGACAGAA  950

seq1  CACAGTG-CCATTT--GCTGAGAAAGAAGGAGA  960
      ||||| | ||||||   ||||||||||||||||
seq2  CACAGGGTCCATTTTGCCTGAGAAAGAAGGAGA  983

seq1: chr9_48624756_48625003
seq2: B6Ng01-179H19.g_73_320 (reverse)

seq1  ACCCCCACCCCACCCCAACACAGATAGTCCCCTCACCAACGATAGACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCACCCCACCCCAACACAGATAGTCCCCTCACCAACGATAGACTTG  50

seq1  ACAGACATTTGACAACTCAGATTGACAGAAAAGAGGCTGGGAGTTCGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTTGACAACTCAGATTGACAGAAAAGAGGCTGGGAGTTCGGGG  100

seq1  AGGGGGAAGGGGCAAACTCAAGTCCCTATGCCAAAACACACCTGACCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGAAGGGGCAAACTCAAGTCCCTATGCCAAAACACACCTGACCCCT  150

seq1  GCTCAGTGACAAAGGTTTGAAATAGTTCTCAAGTCAGATTCTAGTAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGACAAAGGTTTGAAATAGTTCTCAAGTCAGATTCTAGTAAGGA  200

seq1  GGAAGTGGGAAGCAGGCCTGGGCAGGCCCTGATATGGCTGGAAAGAAG  248
      |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGAAGTGGGAAGCAGGCCTGGGCAGGCCCTGATAAGGCTGGAAAGAAG  248