BAC Information

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BAC

Clone NameB6Ng01-179N16
Chromosome6 (Build37)9 (Build37)
Map Location 62,174,604 - 62,175,72528,181,731 - 28,182,331
singlet/doubletsingletsinglet
Overlap geneC130092O11Rik
Upstream geneLOC100041764, LOC100042694
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179N16.bB6Ng01-179N16.g
ACCGA006458GA006459
length1,124626
definitionB6Ng01-179N16.b B6Ng01-179N16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,174,604 - 62,175,725)(28,181,731 - 28,182,331)
sequence
gaattcattgagactatctaacgtctaatctcttagaccaccttaatatt
aaaataatattaaaatttttctaaaaactgtgtttccatcaatgcaacca
ttgaatcaattttcactaaagcagtgctatttacatggtagattaaaaat
agaaattatgcatcaatgagcaggcacagtcagtacataataccaattat
gaaagcagtatgcaatgccatcctagaatttcctttcttaagacatctct
tttaaagaaagtacttgcaactttgcactcttttctttttcaaagtgatc
taatgatgatctattttggactgaatcatagtatttgttttttaaatctg
cagtaaattttcatgtgtacttcaatagacaggcgtcttcatacagaaat
atatgacttttcattctcaggattcccttccttagctacaatataattta
gtttctcactcacccctacatcctcgctcatagctacttcctgcaggcag
cagtttcttcaaggtctatgtaaggagtcttctcagcttcactgttgagc
tatcaataccataatcaacttttcatagctaaaggaacttgtcatttggt
ttgattctcctgggaacagaccataacatacattttattgaaaatggtga
agaaatgccagtgtcctgggaacttgggaaacggagaagaagaaggaagt
tgtgtcaatgctccattacacgtttggagctgtcgacaatccagaacttt
cccttcacatttcctgaaaaagtcctcccaacaatacatggaaataattt
tattttttgatggatagttgtaaatgtatactgatttatgaacaaagtga
tttttatacaatttttactgtgatttggaaaaatccttgttactgtctat
tacacaagctttatgcctcttatcatggaagactggactgcaccttgaac
acctctgtttgtgtcagaagaacatctgtctttttgttatagtattttgt
ttatctaagactaaaggtattccattcagcttggaaatcttttttttttt
tttttccaaattgcatgtacttggagaactaaattttcatgatccttgta
gaactcacgggatattaaatattt

gaattctcacctgaggaataccaaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccatctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gtccatagcagccttatttataatagccagaagctggaatgaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacagaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaaccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattatcccaaaacc
taggatacccaagatatttggatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_62174604_62175725
seq2: B6Ng01-179N16.b_49_1172

seq1  GAATTCATTGAGACTATCTAACGTCTAATCTCTTAGACCACCTTAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAGACTATCTAACGTCTAATCTCTTAGACCACCTTAATATT  50

seq1  AAAATAATATTAAAATTTTTCTAAAAACTGTGTTTCCATCAATGCAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATATTAAAATTTTTCTAAAAACTGTGTTTCCATCAATGCAACCA  100

seq1  TTGAATCAATTTTCACTAAAGCAGTGCTATTTACATGGTAGATTAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCAATTTTCACTAAAGCAGTGCTATTTACATGGTAGATTAAAAAT  150

seq1  AGAAATTATGCATCAATGAGCAGGCACAGTCAGTACATAATACCAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATGCATCAATGAGCAGGCACAGTCAGTACATAATACCAATTAT  200

seq1  GAAAGCAGTATGCAATGCCATCCTAGAATTTCCTTTCTTAAGACATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGTATGCAATGCCATCCTAGAATTTCCTTTCTTAAGACATCTCT  250

seq1  TTTAAAGAAAGTACTTGCAACTTTGCACTCTTTTCTTTTTCAAAGTGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAAGTACTTGCAACTTTGCACTCTTTTCTTTTTCAAAGTGATC  300

seq1  TAATGATGATCTATTTTGGACTGAATCATAGTATTTGTTTTTTAAATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGATCTATTTTGGACTGAATCATAGTATTTGTTTTTTAAATCTG  350

seq1  CAGTAAATTTTCATGTGTACTTCAATAGACAGGCGTCTTCATACAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATTTTCATGTGTACTTCAATAGACAGGCGTCTTCATACAGAAAT  400

seq1  ATATGACTTTTCATTCTCAGGATTCCCTTCCTTAGCTACAATATAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTTTTCATTCTCAGGATTCCCTTCCTTAGCTACAATATAATTTA  450

seq1  GTTTCTCACTCACCCCTACATCCTCGCTCATAGCTACTTCCTGCAGGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCACTCACCCCTACATCCTCGCTCATAGCTACTTCCTGCAGGCAG  500

seq1  CAGTTTCTTCAAGGTCTATGTAAGGAGTCTTCTCAGCTTCACTGTTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTCAAGGTCTATGTAAGGAGTCTTCTCAGCTTCACTGTTGAGC  550

seq1  TATCAATACCATAATCAACTTTTCATAGCTAAAGGAACTTGTCATTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATACCATAATCAACTTTTCATAGCTAAAGGAACTTGTCATTTGGT  600

seq1  TTGATTCTCCTGGGAACAGACCATAACATACATTTTATTGAAAATGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCTCCTGGGAACAGACCATAACATACATTTTATTGAAAATGGTGA  650

seq1  AGAAATGCCAGTGTCCTGGGAACTTGGGAAACGGAGAAGAAGAAGGAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGCCAGTGTCCTGGGAACTTGGGAAACGGAGAAGAAGAAGGAAGT  700

seq1  TGTGTCAATGCTCCATTACACGTTTGGAGCTGTCGACAATCCAGAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAATGCTCCATTACACGTTTGGAGCTGTCGACAATCCAGAACTTT  750

seq1  CCCTTCACATTTCCTGAAAAAGTCCTCCCAACAATACATGGAAATAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACATTTCCTGAAAAAGTCCTCCCAACAATACATGGAAATAATTT  800

seq1  TA-TTTTTGATGGATAGTTGTAAATGTATACTGATTTATGAACAAAGTGA  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGATGGATAGTTGTAAATGTATACTGATTTATGAACAAAGTGA  850

seq1  TTTTTATACAA-TTTTACTGTGATTTGGAAAAATCC-TGTTACTGTCTAT  897
      ||||||||||| |||||||||||||||||||||||| |||||||||||||
seq2  TTTTTATACAATTTTTACTGTGATTTGGAAAAATCCTTGTTACTGTCTAT  900

seq1  TACACAAGCTTTATGCCTCTTATCATGGAAGACTGGACTGCACCTTGAAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGCTTTATGCCTCTTATCATGGAAGACTGGACTGCACCTTGAAC  950

seq1  ACCTCTG-TTGTGTCAG-AGAACATCTTGTCTTTTTGTTATAGTATTTTG  995
      ||||||| ||||||||| |||||||| |||||||||||||||||||||||
seq2  ACCTCTGTTTGTGTCAGAAGAACATC-TGTCTTTTTGTTATAGTATTTTG  999

seq1  TTTTATCTAAGACT-AAGGTATTCCATTCAGCTTGGAAAATCTTTTTTTT  1044
       ||||||||||||| ||||||||||||||||||||||||   ||||||||
seq2  -TTTATCTAAGACTAAAGGTATTCCATTCAGCTTGGAAATCTTTTTTTTT  1048

seq1  TTTTTTTCAGATTTGCATGTACTT-GAGAACTAAATTTTTTAATGATCTT  1093
      ||||||||  | |||||||||||| ||||||||||  |||| |||||| |
seq2  TTTTTTTCCAAATTGCATGTACTTGGAGAACTAAA--TTTTCATGATCCT  1096

seq1  TGTAAGAACTCAC-GGATATTTAAATATTT  1122
      ||| ||||||||| ||||| ||||||||||
seq2  TGT-AGAACTCACGGGATA-TTAAATATTT  1124


seq1: chr9_28181731_28182331
seq2: B6Ng01-179N16.g_139_694 (reverse)

seq1  AAAATCCAAATATTCTAATATCATGAAATGTGATTAGATTGAACTATTCG  50
      |||||||||||| |||            || |            |||   
seq2  AAAATCCAAATA-TCT------------TGGG------------TAT---  22

seq1  AACCAAAGTCAGAAACTGTTAAAGTAGACAAAAATATCCACTTATCAGTG  100
        || | ||         ||   |      | ||||||||||||||||||
seq2  --CCTAGGT---------TTTGGG------ATAATATCCACTTATCAGTG  55

seq1  AGTACATATTGTGTGAGTTCTTTTGTGATTGGGTTACCTCACTCAGGATG  150
      |||||||||||||||||||| ||||||| || ||||||||||||||||||
seq2  AGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATG  105

seq1  ATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCTT  200
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  ATGCCCTCCAGGTCCATCCATTTGGTTAGGAATTTCATAAATTCATTCTT  155

seq1  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTCTGTAGATGTACCACATTTTCTGTA  205

seq1  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCATTCCAGCTTCTGGCTATT  255

seq1  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGT  350
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGGACATAGTGGAGCATGTGTCCTTCTTACCAGT  305

seq1  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCTG  400
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  355

seq1  GTAGTACTATGTCCAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAGT  450
      ||||||||||||||||||||||||||||| ||||||  ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGATGGATTTCCAGAGT  405

seq1  GGTTGTACAAGTTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  500
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  455

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  505

seq1  TTCTGACTGTTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  600
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  555

seq1  C  601
      |
seq2  C  556


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