BAC Information

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BAC

Clone NameB6Ng01-179N20
Chromosome9 (Build37)
Map Location 17,486,693 - 17,487,745
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090
Downstream geneLOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179N20.bB6Ng01-179N20.g
ACCGA006466GA006467
length1,064778
definitionB6Ng01-179N20.b B6Ng01-179N20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttccacctgtaacagccagcatattttatacacaacagggag
aagacattctcataattttaaggtggtttctggaggaaagagcatgatgc
agcataggtctctcacaaatgtcaagtagatacattaagggattatagga
tgcactggagtcattagtagaacatgaatattgaatgcccttttgaggat
gactatcttctcttcgatggagctttcttcctattgttcagagaggggaa
taggaggaagcctagccaagatcctctttgcctttaatctcactaggtgc
cagttagcccattaggatttctctcctttgctttgtgttctctggagtgg
aaccaagtggcagcctgtgaatctcttgtctataacaggcatttgatgac
acacttgcctgttcagtattccagattcctgatgattctagccattcagg
ttcttcaacctagagtcattgagaaaatgtccagacttcagttcagggaa
agagtagactgcttatcaatttccttgtttgaaacatgctattgctgcta
cagtacctcgtatacttgtctctggttctcaactttcatgttgaaggaca
tcggacaacagcttttcttgtggcataaatgcctaccccattttctttgg
cttgcttctagttttgaactctttggatatgttgatctatgcatttatta
acatttattcacatgtggaaaagacagcaagtaagccatatttgttcact
gcttcagaatgctgggaccctagattttttatccatataataatttagtc
agaaaagttaatgcggttcagctggttttactcctgagtcaggacttgaa
caggatactgaaaaataaggctgccctatacttaacaaacactgtctttt
ctataatatgactttctgtttttcctctcaatgaagatttttcataacac
agtaaagctagtcagctgaacattttttagtaattaagtaacttctaaga
aattgaaagtaacttttcttatcctaaaacaggaataaatttaccagcca
ccacagtggtcctg

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcgggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccaggagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtatttcactgataagtggatattagccccaaac
ctaggataaccaagatataagatataattttgctaaaacacatgaaactc
aagaagaatgaagactgaaagtgtggacactatgcccctccttagatttt
gggaaccaaacacccatggaaggagttacagagacaaagtttggagctga
gataaaaaggattggaccatggtataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17486693_17487745
seq2: B6Ng01-179N20.b_46_1109

seq1  GAATTCATTTCCACCTGTAACAGCCAGCATATTTTATACACAACAGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCACCTGTAACAGCCAGCATATTTTATACACAACAGGGAG  50

seq1  AAGACATTCTCATAATTTTAAGGTGGTTTCTGGAGGAAAGAGCATGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTCTCATAATTTTAAGGTGGTTTCTGGAGGAAAGAGCATGATGC  100

seq1  AGCATAGGTCTCTCACAAATGTCAAGTAGATACATTAAGGGATTATAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGGTCTCTCACAAATGTCAAGTAGATACATTAAGGGATTATAGGA  150

seq1  TGCACTGGAGTCATTAGTAGAACATGAATATTGAATGCCCTTTTGAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGAGTCATTAGTAGAACATGAATATTGAATGCCCTTTTGAGGAT  200

seq1  GACTATCTTCTCTTCGATGGAGCTTTCTTCCTATTGTTCAGAGAGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCTTCTCTTCGATGGAGCTTTCTTCCTATTGTTCAGAGAGGGGAA  250

seq1  TAGGAGGAAGCCTAGCCAAGATCCTCTTTGCCTTTAATCTCACTAGGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGAAGCCTAGCCAAGATCCTCTTTGCCTTTAATCTCACTAGGTGC  300

seq1  CAGTTAGCCCATTAGGATTTCTCTCCTTTGCTTTGTGTTCTCTGGAGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCCCATTAGGATTTCTCTCCTTTGCTTTGTGTTCTCTGGAGTGG  350

seq1  AACCAAGTGGCAGCCTGTGAATCTCTTGTCTATAACAGGCATTTGATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTGGCAGCCTGTGAATCTCTTGTCTATAACAGGCATTTGATGAC  400

seq1  ACACTTGCCTGTTCAGTATTCCAGATTCCTGATGATTCTAGCCATTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCCTGTTCAGTATTCCAGATTCCTGATGATTCTAGCCATTCAGG  450

seq1  TTCTTCAACCTAGAGTCATTGAGAAAATGTCCAGACTTCAGTTCAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAACCTAGAGTCATTGAGAAAATGTCCAGACTTCAGTTCAGGGAA  500

seq1  AGAGTAGACTGCTTATCAATTTCCTTGTTTGAAACATGCTATTGCTGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGACTGCTTATCAATTTCCTTGTTTGAAACATGCTATTGCTGCTA  550

seq1  CAGTACCTCGTATACTTGTCTCTGGTTCTCAACTTTCATGTTGAAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTCGTATACTTGTCTCTGGTTCTCAACTTTCATGTTGAAGGACA  600

seq1  TCGGACAACAGCTTTTCTTGTGGCATAAATGCCTACCCCATTTTCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGACAACAGCTTTTCTTGTGGCATAAATGCCTACCCCATTTTCTTTGG  650

seq1  CTTGCTTCTAGTTTTGAACTCTTTGGATATGTTGATCTATGCATTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTAGTTTTGAACTCTTTGGATATGTTGATCTATGCATTTATTA  700

seq1  ACATTTATTCACATGTGGAAAAGACAGCAAGTAAGCCATATTTGTTCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTCACATGTGGAAAAGACAGCAAGTAAGCCATATTTGTTCACT  750

seq1  GCTTCAGAATGCTGGGACCCTAGA-TTTTTATCCATATAATAATTTAGTC  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTTCAGAATGCTGGGACCCTAGATTTTTTATCCATATAATAATTTAGTC  800

seq1  AGAAAAGTTAATGCGGTTCAGCTGGTTTTACTCCTGAGTCAGGACTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTAATGCGGTTCAGCTGGTTTTACTCCTGAGTCAGGACTTGAA  850

seq1  CAGGATACTGAAAAATAAGGCTGCCCTATAACTTACAAACACTGTCTTTT  899
      ||||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  CAGGATACTGAAAAATAAGGCTGCCCTATACTTAACAAACACTGTCTTTT  900

seq1  CTATAATATGAC-TTCTGTTTTTCCTCTCAATGAAGA-TATTCATAACAC  947
      |||||||||||| |||||||||||||||||||||||| | ||||||||||
seq2  CTATAATATGACTTTCTGTTTTTCCTCTCAATGAAGATTTTTCATAACAC  950

seq1  AGT-AAGCTAGTCAGCTGAACA-TTTTTAGTAATTAAGTAACTTCTAGAA  995
      ||| |||||||||||||||||| ||||||||||||||||||||||||  |
seq2  AGTAAAGCTAGTCAGCTGAACATTTTTTAGTAATTAAGTAACTTCTAAGA  1000

seq1  ATTTGAAAGTAACTTT--CTATTC-AAAACAGGAATAAA-ATACAAG-CA  1040
      | ||||||||||||||   ||| | ||||||||||||||  ||| || ||
seq2  AATTGAAAGTAACTTTTCTTATCCTAAAACAGGAATAAATTTACCAGCCA  1050

seq1  ACACAGTGG-CCTG  1053
       |||||||| ||||
seq2  CCACAGTGGTCCTG  1064


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