BAC Information

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BAC

Clone NameB6Ng01-180N15
Chromosome9 (Build37)
Map Location 29,263,006 - 29,436,674
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180N15.bB6Ng01-180N15.g
ACCGA007175GA007176
length168529
definitionB6Ng01-180N15.b B6Ng01-180N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,263,006 - 29,263,173)(29,436,140 - 29,436,674)
sequence
gaattcccagattctttcagattgtactttaattgaaagcttctctgcca
ttgaacatgtcgagaaaacaaactgtattttgtgggttataaaaataaaa
atagtatataaagttggaataaggtgaagtagaggtgagtatggaaggaa
tttgagggacaatggggg
tcctcactcagcaggtgtcattgaacaagtacacagggggatggaggagg
tttgtggtagagcacacatttctgtgaagggaaagagggcggaagtcctt
ttggtagatgtgagcatacatagtgcatttcaggatgataaggagactga
tgtgtctggtgcagaagaataccgagaaggtaggggagatatgaggagcg
aatgaggaccatctcactgcaatctggatgactagaagctgctggtgact
tctgagaggtgaccaggattgtcacttttcaaacggcctctctggttgct
ctctggtagcaagaattgaagcaaggaagctcatgcagactagcagaggg
tagtagaagcttaaattcagcaggtgaggcttctctaagggattggtggt
caatctaaaccacaggaaggcagcaagggagacctagggctcaagggacc
atcattttttcccctgtcttcatatctacccaaatatgggatttggttta
tttttttcaattcactagtgcagtggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29263006_29263173
seq2: B6Ng01-180N15.b_45_212

seq1  GAATTCCCAGATTCTTTCAGATTGTACTTTAATTGAAAGCTTCTCTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGATTCTTTCAGATTGTACTTTAATTGAAAGCTTCTCTGCCA  50

seq1  TTGAACATGTCGAGAAAACAAACTGTATTTTGTGGGTTATAAAAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATGTCGAGAAAACAAACTGTATTTTGTGGGTTATAAAAATAAAA  100

seq1  ATAGTATATAAAGTTGGAATAAGGTGAAGTAGAGGTGAGTATGGAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATATAAAGTTGGAATAAGGTGAAGTAGAGGTGAGTATGGAAGGAA  150

seq1  TTTGAGGGACAATGGGGG  168
      ||||||||||||||||||
seq2  TTTGAGGGACAATGGGGG  168

seq1: chr9_29436140_29436674
seq2: B6Ng01-180N15.g_71_605 (reverse)

seq1  GAGCCACTGCACTAGTGAATTGAAAAAAATAAACCAAATCCCATATTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTGCACTAGTGAATTGAAAAAAATAAACCAAATCCCATATTTGG  50

seq1  GTAGATATGAAGACAGGGGAAAAAATGATGGTCCCTTGAGCCCTAGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATATGAAGACAGGGGAAAAAATGATGGTCCCTTGAGCCCTAGGTCT  100

seq1  CCCTTGCTGCCTTCCTGTGGTTTAGATTGACCACCAATCCCTTAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTGCCTTCCTGTGGTTTAGATTGACCACCAATCCCTTAGAGAAG  150

seq1  CCTCACCTGCTGAATTTAAGCTTCTACTACCCTCTGCTAGTCTGCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTGCTGAATTTAAGCTTCTACTACCCTCTGCTAGTCTGCATGAG  200

seq1  CTTCCTTGCTTCAATTCTTGCTACCAGAGAGCAACCAGAGAGGCCGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGCTTCAATTCTTGCTACCAGAGAGCAACCAGAGAGGCCGTTTG  250

seq1  AAAAGTGACAATCCTGGTCACCTCTCAGAAGTCACCAGCAGCTTCTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACAATCCTGGTCACCTCTCAGAAGTCACCAGCAGCTTCTAGTC  300

seq1  ATCCAGATTGCAGTGAGATGGTCCTCATTCGCTCCTCATATCTCCCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATTGCAGTGAGATGGTCCTCATTCGCTCCTCATATCTCCCCTAC  350

seq1  CTTCTCGGTATTCTTCTGCACCAGACACATCAGTCTCCTTATCATCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCGGTATTCTTCTGCACCAGACACATCAGTCTCCTTATCATCCTGA  400

seq1  AATGCACTATGTATGCTCACATCTACCAAAAGGACTTCCGCCCTCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTATGTATGCTCACATCTACCAAAAGGACTTCCGCCCTCTTTCC  450

seq1  CTTCACAGAAATGTGTGCTCTACCACAAACCTCCTCCATCCCCCTGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGAAATGTGTGCTCTACCACAAACCTCCTCCATCCCCCTGTGTA  500

seq1  CTTGTTCAATGACACCTGCTGAGTGAGGAGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAATGACACCTGCTGAGTGAGGAGAATTC  535