BAC Information

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BAC

Clone NameB6Ng01-181K18
Chromosome9 (Build37)
Map Location 33,235,534 - 33,388,373
singlet/doubletdoublet
Overlap genenone
Upstream geneFli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181K18.bB6Ng01-181K18.g
ACCGA007771GA007772
length1,0641,160
definitionB6Ng01-181K18.b B6Ng01-181K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,235,534 - 33,236,598)(33,387,207 - 33,388,373)
sequence
gaattccacagggaaacttctatttacctacacattttacaagggagtta
aagcagacattataaaaacctgtaattcttccatacaaattactcacaat
gcagattttgcaattattaggttacctgaccatttatctagcttgtcttt
tgttcttatagaacagattttcagataaaatgtatccattgctttgtact
tattactcaggtgccaaagtttgaaagaagtatgaactcagaagttctgc
atcatatctggaacttgtgcctctgttctctgttgttgactgttatgtca
acctctaccatacacaaaagggactgtggtcctgcactctatctaaatta
aagacatacagaggagctggtgagttttctagattgttaggggagcaaag
caattcttgttttggagagaaggaaagtaaaactaaaaatgattttattt
attcttagaaaaaacaagagagagagagagagagagagagagagagagag
agagagagagagagagagagagagagagagagatgaaaagttgaaatatc
tcctgaaagtatatctaggaattcattggtcgaactctctagagtacact
tctatgggctgtgaatataaaagggagagaaagagagagagagagaaaga
gagaaagagagaaagagggagagagaataagtgtagttgtttgcacagat
cttagtactatttgctatccttctactgcttttggtaagttatatacttg
tacaaaaatattttagattaaatttttcttaccaaattctctgtactata
aacttgagtatgcagctaccacgaccccatcaagcatgataacacatctc
cttatccattgagttgtcttgccactgaagcataatagtttttggaggaa
attcccaagagattcaactgggacatcgatggctattggaagtcctgatt
tgctgtggaataaatggtgatctgttatagccacaaagtgagaatggagc
cttctaaaccaaggacaagtcgtttcatgaagttatatcctcttttagag
agattgtacttttc

gaattcatgcctgatattgtaaacatggtcaaaatctacagttagggaag
tcataggcctcagggaagaacttactgatgctatttttctaaattattgt
tttgtcaagctgccttctaaaaatttacgtttatattaataggtatgtgc
tgcctctaaacttagagaatcttcttacagcagttgtccatagttaatat
agaaattcattactactcaagtgataacaataaggaactttaaggctcat
acattccttaggaatttgattagagaatgctaattagtgagcctttatag
tcgaggtacaagtgagtgtgaactgaaaaacttcacttagtttgactcca
tggtagctgtaagtccaatcgctaagcaaaatcaatcctgataataatat
gttgatgatgataagtaatagcttctctcatgccacaccctgtatttcat
gtttttatagataaactgtgagtcttataaactctctttaaaaaaaatta
aaccagacctgatggtctgacctgcagtctcagagacttgagagactgaa
caagaacattaaaagttcagggcaagctgaatctacaaagtgagtttgag
gcctgagaaactcagtgggtcctagtgtcaaaataaacagtaaaaacgaa
ggtagggatatggctccgtggtaaactgctaacctagaatgcttgaggcc
ctccgtttcttaaaaataactaagtaaagaatacgtgctgtacataaagt
catatgtagttaaagaatgggttcaatatcaagtagctctcacacaattt
gtgcaaaaaacaaatccagacaggacaagagccaaagccaggatataaac
tcatcacattcgtgattagctgaatggatccttgaaagaaaatgcatttt
ccacacatttccatctgaaacacaattcacatgttgtttattttcataag
atgcttggaagctaaaggcctcccttactgtgcatgaataacttttacca
catttaaagagaatagaagtcgatctttgaaaagaacttgtgtacgtgcc
ctatgaatgtacttctttctatgtaactcatatctcctgtacatcataaa
aagtagattttaatttcatatttaatgtttaaatttcctttctagaaagt
cccattttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33235534_33236598
seq2: B6Ng01-181K18.b_44_1107

seq1  GAATTCCACAGGGAAACTTCTATTTACCTACACATTTTACAAGGGAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGGAAACTTCTATTTACCTACACATTTTACAAGGGAGTTA  50

seq1  AAGCAGACATTATAAAAACCTGTAATTCTTCCATACAAATTACTCACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACATTATAAAAACCTGTAATTCTTCCATACAAATTACTCACAAT  100

seq1  GCAGATTTTGCAATTATTAGGTTACCTGACCATTTATCTAGCTTGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTTGCAATTATTAGGTTACCTGACCATTTATCTAGCTTGTCTTT  150

seq1  TGTTCTTATAGAACAGATTTTCAGATAAAATGTATCCATTGCTTTGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTATAGAACAGATTTTCAGATAAAATGTATCCATTGCTTTGTACT  200

seq1  TATTACTCAGGTGCCAAAGTTTGAAAGAAGTATGAACTCAGAAGTTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTCAGGTGCCAAAGTTTGAAAGAAGTATGAACTCAGAAGTTCTGC  250

seq1  ATCATATCTGGAACTTGTGCCTCTGTTCTCTGTTGTTGACTGTTATGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCTGGAACTTGTGCCTCTGTTCTCTGTTGTTGACTGTTATGTCA  300

seq1  ACCTCTACCATACACAAAAGGGACTGTGGTCCTGCACTCTATCTAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACCATACACAAAAGGGACTGTGGTCCTGCACTCTATCTAAATTA  350

seq1  AAGACATACAGAGGAGCTGGTGAGTTTTCTAGATTGTTAGGGGAGCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATACAGAGGAGCTGGTGAGTTTTCTAGATTGTTAGGGGAGCAAAG  400

seq1  CAATTCTTGTTTTGGAGAGAAGGAAAGTAAAACTAAAAATGATTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTGTTTTGGAGAGAAGGAAAGTAAAACTAAAAATGATTTTATTT  450

seq1  ATTCTTAGAAAAAACA--AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  498
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  ATTCTTAGAAAAAACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  500

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAAAGTTGAAATATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAAAGTTGAAATATC  550

seq1  TCCTGAAAGTATATCTAGGAATTCATTGGTCGAACTCTCTAGAGTACACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAGTATATCTAGGAATTCATTGGTCGAACTCTCTAGAGTACACT  600

seq1  TCTATGGGCTGTGAATATAAAAGGGAGAGAAAGAGAGAGAGAGAGAAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGGCTGTGAATATAAAAGGGAGAGAAAGAGAGAGAGAGAGAAAGA  650

seq1  GAGAAAGAGAGAAAGAGGGAGAGAGAATAAGTGTAGTTGTTTGCACAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGAGAAAGAGGGAGAGAGAATAAGTGTAGTTGTTTGCACAGAT  700

seq1  CTTAGTACTATTTGCTATCCTTCTACTGCTTTTGGTAAGTTATATACTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTACTATTTGCTATCCTTCTACTGCTTTTGGTAAGTTATATACTTG  750

seq1  TACAAAAATATTTTAGATTAAATTTTTCTTACCAAATTCTCTGTACTAT-  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACAAAAATATTTTAGATTAAATTTTTCTTACCAAATTCTCTGTACTATA  800

seq1  AACTTGAGTATGCAGCTACCACGACCCCATCAAGCATGATAACACATCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAGTATGCAGCTACCACGACCCCATCAAGCATGATAACACATCTC  850

seq1  TTTATCCATTGAGTTGTCTTGCCACTGAAGCATAATAGTTTTGGAAGGAA  897
       ||||||||||||||||||||||||||||||||||||||||| | ||| |
seq2  CTTATCCATTGAGTTGTCTTGCCACTGAAGCATAATAGTTTTTGGAGG-A  899

seq1  AATTCCCAAGAGATTCAACT-GGACATCGATGGCTATTGGAAGTCCTGAT  946
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTCCCAAGAGATTCAACTGGGACATCGATGGCTATTGGAAGTCCTGAT  949

seq1  TTGCTGTGTAATAAATGTTGATCTTGTTTATAGTCACAAAGTGAGAATGG  996
      |||||||| |||||||| ||||||   |||||| |||||||||||||| |
seq2  TTGCTGTGGAATAAATGGTGATCT--GTTATAGCCACAAAGTGAGAAT-G  996

seq1  GAAGCTTCTAAACAAAGACAAAGTTGTTTCATGAAGTTAATATCCTCTTT  1046
      ||  ||||||||| |||   |||| ||||||||||||| |||||||| ||
seq2  GAGCCTTCTAAACCAAGGACAAGTCGTTTCATGAAGTT-ATATCCTC-TT  1044

seq1  TTAGAGAGATTGTA-TTTTC  1065
      |||||||||||||| |||||
seq2  TTAGAGAGATTGTACTTTTC  1064


seq1: chr9_33387207_33388373
seq2: B6Ng01-181K18.g_66_1225 (reverse)

seq1  AGAAAATGTGCACTTTTCTAGAAAAGAAAATATTAAACATTAAATATGAA  50
      |||||||| | || |||||||||| ||||   |||||||||||||||| |
seq2  AGAAAATG-GGAC-TTTCTAGAAAGGAAA--TTTAAACATTAAATATG-A  45

seq1  AAATAAAATCTACCTTTTTAATGATGTACAGGAGAATATGAAGTTACATA  100
      || ||||||||||  |||| |||||||||||||| ||||| |||||||||
seq2  AATTAAAATCTAC--TTTTTATGATGTACAGGAG-ATATG-AGTTACATA  91

seq1  GAAAAGAAGTACATTCATA-GGCACGTACAACAGTTTCTTTTCAAAGATC  149
      | ||||||||||||||||| ||||||||| |||  |||||||||||||||
seq2  G-AAAGAAGTACATTCATAGGGCACGTAC-ACAAGTTCTTTTCAAAGATC  139

seq1  GACTTCTA-TCTCTTTAAATGT-GTAAAAGTTATTCATGCACAGTAAAGG  197
      |||||||| ||||||||||||| |||||||||||||||||||||| ||||
seq2  GACTTCTATTCTCTTTAAATGTGGTAAAAGTTATTCATGCACAGT-AAGG  188

seq1  GAGGCCTTTAGCTTCCAAGCATCTTATG-AAATAAACAACATGTGAATTG  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGGCCTTTAGCTTCCAAGCATCTTATGAAAATAAACAACATGTGAATTG  238

seq1  TGTTTCAGATGGAAATGTGTGG-AAATGCATTTTCTTTCAAGGATCCATT  295
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTTCAGATGGAAATGTGTGGAAAATGCATTTTCTTTCAAGGATCCATT  288

seq1  CAGCTAATCACGAATGTGATGAGTTTATATCCTGGCTTTGGCTCTTGTCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATCACGAATGTGATGAGTTTATATCCTGGCTTTGGCTCTTGTCC  338

seq1  TGTCTGGATTTGTTTTTTGCACAAATTGTGTGAGAGCTACTTGATATTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGATTTGTTTTTTGCACAAATTGTGTGAGAGCTACTTGATATTGA  388

seq1  ACCCATTCTTTAACTACATATGACTTTATGTACAGCACGTATTCTTTACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTCTTTAACTACATATGACTTTATGTACAGCACGTATTCTTTACT  438

seq1  TAGTTATTTTTAAGAAACGGAGGGCCTCAAGCATTCTAGGTTAGCAGTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTTTAAGAAACGGAGGGCCTCAAGCATTCTAGGTTAGCAGTTT  488

seq1  ACCACGGAGCCATATCCCTACCTTCGTTTTTACTGTTTATTTTGACACTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGAGCCATATCCCTACCTTCGTTTTTACTGTTTATTTTGACACTA  538

seq1  GGACCCACTGAGTTTCTCAGGCCTCAAACTCACTTTGTAGATTCAGCTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACTGAGTTTCTCAGGCCTCAAACTCACTTTGTAGATTCAGCTTG  588

seq1  CCCTGAACTTTTAATGTTCTTGTTCAGTCTCTCAAGTCTCTGAGACTGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACTTTTAATGTTCTTGTTCAGTCTCTCAAGTCTCTGAGACTGCA  638

seq1  GGTCAGACCATCAGGTCTGGTTTAATTTTTTTTAAAGAGAGTTTATAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGACCATCAGGTCTGGTTTAATTTTTTTTAAAGAGAGTTTATAAGA  688

seq1  CTCACAGTTTATCTATAAAAACATGAAATACAGGGTGTGGCATGAGAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTTTATCTATAAAAACATGAAATACAGGGTGTGGCATGAGAGAA  738

seq1  GCTATTACTTATCATCATCAACATATTATTATCAGGATTGATTTTGCTTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTACTTATCATCATCAACATATTATTATCAGGATTGATTTTGCTTA  788

seq1  GCGATTGGACTTACAGCTACCATGGAGTCAAACTAAGTGAAGTTTTTCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTGGACTTACAGCTACCATGGAGTCAAACTAAGTGAAGTTTTTCAG  838

seq1  TTCACACTCACTTGTACCTCGACTATAAAGGCTCACTAATTAGCATTCTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTCACTTGTACCTCGACTATAAAGGCTCACTAATTAGCATTCTC  888

seq1  TAATCAAATTCCTAAGGAATGTATGAGCCTTAAAGTTCCTTATTGTTATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAATTCCTAAGGAATGTATGAGCCTTAAAGTTCCTTATTGTTATC  938

seq1  ACTTGAGTAGTAATGAATTTCTATATTAACTATGGACAACTGCTGTAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTAGTAATGAATTTCTATATTAACTATGGACAACTGCTGTAAGA  988

seq1  AGATTCTCTAAGTTTAGAGGCAGCACATACCTATTAATATAAACGTAAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCTAAGTTTAGAGGCAGCACATACCTATTAATATAAACGTAAAT  1038

seq1  TTTTAGAAGGCAGCTTGACAAAACAATAATTTAGAAAAATAGCATCAGTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGGCAGCTTGACAAAACAATAATTTAGAAAAATAGCATCAGTA  1088

seq1  AGTTCTTCCCTGAGGCCTATGACTTCCCTAACTGTAGATTTTGACCATGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTCCCTGAGGCCTATGACTTCCCTAACTGTAGATTTTGACCATGT  1138

seq1  TTACAATATCAGGCATGAATTC  1167
      ||||||||||||||||||||||
seq2  TTACAATATCAGGCATGAATTC  1160


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