BAC Information

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BAC

Clone NameB6Ng01-183L01
Chromosome9 (Build37)
Map Location 46,791,209 - 46,792,274
singlet/doubletsinglet
Overlap genenone
Upstream genePafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik
Downstream geneD930036J05, Cadm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183L01.b
ACCGA009252
length1,075
definitionB6Ng01-183L01.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattacaatcccttttgtaccctccaaacactgcatcttgcgtt
tccaacacagtctcacgagcccggagactcatttgccttttcttcttttt
agaaggtggacagataattcagctagagatggagaacgggggtgcaggca
gaaatcaccctcgggttctaagacaggctgttaaggaagattagaggcct
gcaaggaatacacttgccaccctgttggaagaacatgaagaaaagagatt
ttattttccccctcctcctttagcaaaaagcttttaaaataaacagctga
cggtgtctcttatttgagtaattcttcactgcttataaatgtgtcactct
agactactttatttagagttcttaaaaaaaaatcctgagtactcccagag
agagctgagcagcccttgagggagtaaggtccctcctgatgcccaggctc
agacattcatatattctcccataatctgatctagcttataaaaatatttt
tttataaaaacgagcaagagagacagctggttctcccacacagctgacat
ttccctttatgcctggtttaacttttctatgacaggctgggttcactcca
ctggagaatttttcccttcaaatgagcttcgtgttttatgtttgaatttt
tttttctttagacaaacctggtaatttctcaagttaaagtgtgtacactt
taagcacttgagaagttcaaggatccatttgattggcacatgagtctgag
gttactcatgccaaagtccctgagtctaactgcactctacaaatattaaa
aagcaactaggatattttaacgtgttctaagtgaacacatgcgtacacat
acccaaaaatgtcagttttctaaataattgattagctgctgtgaccacac
ctgccctgcaccaggtagcctgttgtggagtgggaaaggagaagataggg
ctgactctttgtttcttttcttcttccagaggggtgacaggttcttcccc
ctgtagtgctgaagtcactggggcccttttctgcctcgttttggaattat
acttaacatggtgctctcggaaaca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46791209_46792274
seq2: B6Ng01-183L01.b_46_1120 (reverse)

seq1  TGTTTCCAAGA-CACCATG-TAAGTATAAATGC-CAACGAGGCAGAAA--  45
      ||||||| ||| ||||||| ||||||||| | |  |||||||||||||  
seq2  TGTTTCCGAGAGCACCATGTTAAGTATAATTCCAAAACGAGGCAGAAAAG  50

seq1  GGGCCCAGTGGCTATCAGCACT-CA-GGGGAAGAACCTGTCACCCCTCTG  93
      || ||||||| || |||||||| || ||||||||||||||||||||||||
seq2  GGCCCCAGTGACT-TCAGCACTACAGGGGGAAGAACCTGTCACCCCTCTG  99

seq1  GGAGGAGAAAAGAAACAAAGAGTCAGCCCTATC-TCTCC-TTCCCACTCC  141
      | || |||||||||||||||||||||||||||| ||||| ||||||||||
seq2  GAAGAAGAAAAGAAACAAAGAGTCAGCCCTATCTTCTCCTTTCCCACTCC  149

seq1  ACAACAGGCTACCTGGTGCA-GGCAGGTGTGGTCACAGCAGCTAATCAAT  190
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAACAGGCTACCTGGTGCAGGGCAGGTGTGGTCACAGCAGCTAATCAAT  199

seq1  TATTTAGAAAACTGACATTTTTGGGTATGTGTACGCATGTGTTCACTTAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAAAACTGACATTTTTGGGTATGTGTACGCATGTGTTCACTTAG  249

seq1  AACACGTTAAAATATCCTAGTTGCTTTTTAATATTTGTAGAGTGCAGTTA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGTTAAAATATCCTAGTTGCTTTTTAATATTTGTAGAGTGCAGTTA  299

seq1  GACTCAGGGACTTTGGCATGAGTAACCTCAGACTCATGTGCCAATCAAAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGGGACTTTGGCATGAGTAACCTCAGACTCATGTGCCAATCAAAT  349

seq1  GGATCCTTGAACTTCTCAAGTGCTTAAAGTGTACACACTTTAACTTGAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTGAACTTCTCAAGTGCTTAAAGTGTACACACTTTAACTTGAGA  399

seq1  AATTACCAGGTTTGTCTAAAGAAAAAAAAATTCAAACATAAAACACGAAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCAGGTTTGTCTAAAGAAAAAAAAATTCAAACATAAAACACGAAG  449

seq1  CTCATTTGAAGGGAAAAATTCTCCAGTGGAGTGAACCCAGCCTGTCATAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGAAGGGAAAAATTCTCCAGTGGAGTGAACCCAGCCTGTCATAG  499

seq1  AAAAGTTAAACCAGGCATAAAGGGAAATGTCAGCTGTGTGGGAGAACCAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAACCAGGCATAAAGGGAAATGTCAGCTGTGTGGGAGAACCAG  549

seq1  CTGTCTCTCTTGCTCGTTTTTATAAAAAAATATTTTTATAAGCTAGATCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTTGCTCGTTTTTATAAAAAAATATTTTTATAAGCTAGATCA  599

seq1  GATTATGGGAGAATATATGAATGTCTGAGCCTGGGCATCAGGAGGGACCT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGGAGAATATATGAATGTCTGAGCCTGGGCATCAGGAGGGACCT  649

seq1  TACTCCCTCAAGGGCTGCTCAGCTCTCTCTGGGAGTACTCAGGATTTTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTCAAGGGCTGCTCAGCTCTCTCTGGGAGTACTCAGGATTTTTT  699

seq1  TTTAAGAACTCTAAATAAAGTAGTCTAGAGTGACACATTTATAAGCAGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAACTCTAAATAAAGTAGTCTAGAGTGACACATTTATAAGCAGTG  749

seq1  AAGAATTACTCAAATAAGAGACACCGTCAGCTGTTTATTTTAAAAGCTTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTACTCAAATAAGAGACACCGTCAGCTGTTTATTTTAAAAGCTTT  799

seq1  TTGCTAAAGGAGGAGGGGGAAAATAAAATCTCTTTTCTTCATGTTCTTCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAAGGAGGAGGGGGAAAATAAAATCTCTTTTCTTCATGTTCTTCC  849

seq1  AACAGGGTGGCAAGTGTATTCCTTGCAGGCCTCTAATCTTCCTTAACAGC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTGGCAAGTGTATTCCTTGCAGGCCTCTAATCTTCCTTAACAGC  899

seq1  CTGTCTTAGAACCCGAGGGTGATTTCTGCCTGCACCCCCGTTCTCCATCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAGAACCCGAGGGTGATTTCTGCCTGCACCCCCGTTCTCCATCT  949

seq1  CTAGCTGAATTATCTGTCCACCTTCTAAAAAGAAGAAAAGGCAAATGAGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGAATTATCTGTCCACCTTCTAAAAAGAAGAAAAGGCAAATGAGT  999

seq1  CTCCGGGCTCGTGAGACTGTGTTGGAAACGCAAGATGCAGTGTTTGGAGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGGCTCGTGAGACTGTGTTGGAAACGCAAGATGCAGTGTTTGGAGG  1049

seq1  GTACAAAAGGGATTGTAATGGAATTC  1066
      ||||||||||||||||||||||||||
seq2  GTACAAAAGGGATTGTAATGGAATTC  1075