BAC Information

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BAC

Clone NameB6Ng01-185D11
Chromosome9 (Build37)
Map Location 119,122,132 - 119,238,453
singlet/doubletdoublet
Overlap gene9330176C04Rik, Oxsr1
Upstream geneEomes, Golga4, Itga9, LOC100039768, Ctdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13
Downstream geneMyd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1, Cmya1, Cx3cr1, Ccr8, Slc25a38, Rpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185D11.bB6Ng01-185D11.g
ACCGA010388GA010389
length5741,024
definitionB6Ng01-185D11.b B6Ng01-185D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,122,132 - 119,122,650)(119,237,941 - 119,238,453)
sequence
gaattcagaataaaaactgaagtataaagatttgaaaacgttggccagta
aaggagaccacttaacattggtctaccttttaaacctttcagttactgaa
aagattcgtgccattaagggaagcccaaggtttttccattggaacaagaa
gatgtcttgagaacagcttaagactggcccctcccactccaggctcaagg
gtggaaatctgtgaattcgcgttagaggctctgctttaagaaagtgagtg
ctagccgggtgtggtggcgcatgcctttaatcctagcactcaggaggcag
aggcaggcggatttctgagctccaggccagcatggtctacagagtgagtt
ccaggacagccacggctacacagagaaaccctgtcttgaaaaaacaaaca
aacaaacaaaaaaacaagtaagaaagaaagaaagaaagaaaggaaggaag
gaaggaaggaaggaaggaaggaagaaaggaaggaaaggggaaaggggaaa
tgggaaagggaagggaaggcacctcaactgaagtcacctttttggtgagc
tttttacatgggacacaaatatct
gaattcaatcccctcgcatggcctctgagggtcatacatatggtgcacag
acatacatgcaggctttcaggtactcatacatataaaataaagtaaatga
gtcttaagaaaaggaatgaaaggatagatttaagtaaatgagggagatat
tctgataaggagcaatctggaagagttagcttaatcgtaaggacagttgt
ttttatgaggtgaagtcatgggagttgagccttgaagtgagtctgaagag
tttatggaagatcccctcgcaactccctacagaggcatgagaaaatgtga
aggctctgaggagagaaggggctggataaggactagaaggaaggcctcat
ggaccacaggacctagaaggcaggcccccaaggatctcagggaccttccc
attttgttttattttgtctaagagtttcttgtataagtcaagccttgaac
ttgccgagtagccaagagctttgaacttctgattgtcctgccccagtata
gggattagagggctgtaccagttgattttgtgtcaacttgacacaagcta
gagtcaacagagagcaaggaaccttagttgagaaaatgcctccatgagat
ccggctgcatggcatttttttctattagtgatcagtgggggagggcccag
cctattgttgggcggtgccatctcgggactggtagtcctgggttctataa
ggaagcaggctgaccaagctaaggacaggaagtttggggaagcaagccta
tgagcagcatccctctatggcctctgcatcaagttcctgcctccagggtc
ctgccatgactttttttcagtgatgtggaagtgtaagccaaataaaccct
tccctccccaacttgtttttttgggtacagtgctttgtcccagcaataga
aaacaccgagacaagggtctattgccaacaatgccctaggttcctctgtc
tgtctgtttggatgttgcttcttacctttggggcctaccttctttggaga
gtcctttaagctatggttatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119122132_119122650
seq2: B6Ng01-185D11.b_41_559

seq1  GAATTCAGAATAAAAACTGAAGTATAAAGATTTGAAAACGTTGGCCAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAAAAACTGAAGTATAAAGATTTGAAAACGTTGGCCAGTA  50

seq1  AAGGAGACCACTTAACATTGGTCTACCTTTTAAACCTTTCAGTTACTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGACCACTTAACATTGGTCTACCTTTTAAACCTTTCAGTTACTGAA  100

seq1  AAGATTCGTGCCATTAAGGGAAGCCCAAGGTTTTTCCATTGGAACAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCGTGCCATTAAGGGAAGCCCAAGGTTTTTCCATTGGAACAAGAA  150

seq1  GATGTCTTGAGAACAGCTTAAGACTGGCCCCTCCCACTCCAGGCTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTGAGAACAGCTTAAGACTGGCCCCTCCCACTCCAGGCTCAAGG  200

seq1  GTGGAAATCTGTGAATTCGCGTTAGAGGCTCTGCTTTAAGAAAGTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATCTGTGAATTCGCGTTAGAGGCTCTGCTTTAAGAAAGTGAGTG  250

seq1  CTAGCCGGGTGTGGTGGCGCATGCCTTTAATCCTAGCACTCAGGAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCGGGTGTGGTGGCGCATGCCTTTAATCCTAGCACTCAGGAGGCAG  300

seq1  AGGCAGGCGGATTTCTGAGCTCCAGGCCAGCATGGTCTACAGAGTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCGGATTTCTGAGCTCCAGGCCAGCATGGTCTACAGAGTGAGTT  350

seq1  CCAGGACAGCCACGGCTACACAGAGAAACCCTGTCTTGAAAAAACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCACGGCTACACAGAGAAACCCTGTCTTGAAAAAACAAACA  400

seq1  AACAAACAAAAAAACAAGTAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAAACAAGTAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAG  450

seq1  GAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAAGGGGAAAGGGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAAGGGGAAAGGGGAAA  500

seq1  TGGGAAAGGGAAGGGAAGG  519
      |||||||||||||||||||
seq2  TGGGAAAGGGAAGGGAAGG  519

seq1: chr9_119237941_119238453
seq2: B6Ng01-185D11.g_568_1093 (reverse)

seq1  CCATATAAACATAGCTTAAAGGACTCT-CAAAGAAGGTAGACAC--AAAG  47
      |||||||| |||||||||||||||||| |||||||||||| | |  || |
seq2  CCATATAACCATAGCTTAAAGGACTCTCCAAAGAAGGTAGGCCCCAAAGG  50

seq1  TAAG-AGCACCAT-CAAACAGACAGACAGAGGAACCTA-GGCA-TGGTGG  93
      |||| |||| ||| |||||||||||||||||||||||| |||| || |||
seq2  TAAGAAGCAACATCCAAACAGACAGACAGAGGAACCTAGGGCATTGTTGG  100

seq1  C-ATAG-CCCTTGTCTCGGTG-TTTCTATTGCTGGGACAAAGCACTGTAA  140
      | |||| |||||||||||||| ||||||||||||||||||||||||||| 
seq2  CAATAGACCCTTGTCTCGGTGTTTTCTATTGCTGGGACAAAGCACTGTAC  150

seq1  CCAAAAAAACAAGTTGGGGAGGGAAGGGTTTATTTGGCTTACACTTCCAC  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAACAAGTTGGGGAGGGAAGGGTTTATTTGGCTTACACTTCCAC  200

seq1  ATCACTG-AAAAAAGTCATGGCAGGACCCTGGAGGCAGGAAC-TGATGCA  238
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  ATCACTGAAAAAAAGTCATGGCAGGACCCTGGAGGCAGGAACTTGATGCA  250

seq1  GAGGCCATAGAGGGATGCTGCTCATAGGCTTGCTTCCCCAAACTTCCTGT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATAGAGGGATGCTGCTCATAGGCTTGCTTCCCCAAACTTCCTGT  300

seq1  CCTTAGCTTGGTCAGCCTGCTTCCTTATAGAACCCAGGACTACCAGTCCC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTTGGTCAGCCTGCTTCCTTATAGAACCCAGGACTACCAGTCCC  350

seq1  GAGATGGCACCGCCC-ACAATAGGCTGGGCCCTCCCCCACTGATCACTAA  387
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGATGGCACCGCCCAACAATAGGCTGGGCCCTCCCCCACTGATCACTAA  400

seq1  TAGAAAAAAATGCCATGCAGCCGGATCTCATGGAGGCATTTTCTCAACTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAATGCCATGCAGCCGGATCTCATGGAGGCATTTTCTCAACTA  450

seq1  AGGTTCCTTGCTCTCTGTTGACTCTAGCTTGTGTCAAGTTGACACAAAAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCTTGCTCTCTGTTGACTCTAGCTTGTGTCAAGTTGACACAAAAT  500

seq1  CAACTGGTACAGCCCTCTAATCCCTA  513
      ||||||||||||||||||||||||||
seq2  CAACTGGTACAGCCCTCTAATCCCTA  526