BAC Information

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BAC

Clone NameB6Ng01-185I06
Chromosome9 (Build37)
Map Location 99,303,594 - 99,405,311
singlet/doubletdoublet
Overlap geneMras, LOC623534, Armc8
Upstream geneNmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e
Downstream geneDbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb, Nck1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185I06.bB6Ng01-185I06.g
ACCGA010603GA010604
length1,1631,128
definitionB6Ng01-185I06.b B6Ng01-185I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,404,148 - 99,405,311)(99,303,594 - 99,304,718)
sequence
gaattcaaggcaaataaatctgaattgattataaagagtgcttccaatta
gttgttgctaataatattaactcctattcagaaccatatcaacctggtct
ttaaccttcgtttccttttctttctttctttctttttcaatctcttaagt
atctgtatacttttcatttgctcagtagatttttaaaattctttttcatt
tttgttgttgttgtttgaatactcagtaagcaaagcttccaggcgcattg
gccttgcaaaatcttttactatggcgatcttagccttgcttaaactttag
gttagaatagggacgtctgtcagtgtgacagaaataagagaaatatcaat
aggacagatgtgaattcgacttcaaagataaaagcagaaggatttctttc
tgtgagcagaaaggcgatgtaggaaatagcaagggtgccttcatgactac
cgtagaaggatggagtgagtgagacagaccagtggacagatagccaggtg
gaagctgggtaatgcgtgtctgaaatcttggttcctggaaggcagaggca
ggaggatcatgagtcgaaagccaacttggtctgtgcagtgagaacttgtt
tttgtgggttgtttttgttgtctttaaaggtagagttggctcggtgaagc
aggccttggaagtgagcacgctgattgggtcctatgccaaaacgtatctc
gcggctgagcgtgggatttattctttgaggtcttgaaataagatggtagt
cgttgtttaagaaacagtgtgaatcctagagctacttccctggcaggcag
cagcactgggtatgtgattggtgtttaggtttctagaagggtgtcgagtt
ccagccttggaaggctcatcaggataaaatgtttgttcagtttctccttt
gctggggacctcccttctcagcctgtgactgcgctggtctctgagtttct
gtcgcctattttcacctatcggattatacggcatactctgaacatgactc
attttctgctatgattcctgtttctgaaacttacgagagcccccagcctc
agaaagttgtttgccctcaccagcacaattccaaggtgcgttcaccctgt
aacacctcggctcagggtggagcagatcagcgactagtcctgatctcaga
aactcacatatct
gaattcaaatgaaacaagaaacaggtttgtaatacagcaagcaccctgtg
agccccctgggagtgggacctcagaggcatcttcccgagtgtgcctgcac
acatgaccacagccatggggaggacagcacaggaaggcaggccagagatg
ggatggaatcctgacaatccagctgtgtgccttctcccagggagttcaac
tcccactccctagaaccaccagaattggctgtcacattggagaagattct
catgcccagccaactatgcagtgtgtggcggtctttgggagtttgagcca
gtgctagctgtcagaaactgaccaagtaccggaggaaaccagctcaaggg
aggaaggatttactcagttttagatcacaggactgtgacgaggccaagca
tcatggtggcaaggatatgtggaggacaaagctgtttgtctcatggtgga
caggaagaaaagagcaagggagagactggagagactgggtagaacttcca
aagagacaccaccagtgactggcttcctccaagatctcccacctccaaaa
agattgccactgcctagtgaccaagcactcaacacgggagcctgtgggag
acagacattctgtatacaaatgataacatttgaccttatttccatctgta
acagcagctaccatgacagcatgtgtaagaggtaaagagtgcattcatgg
gttttacagcagtaacggcccatgacatcatcgctatcatcatgacccca
ccccatgacatcatcactatcatcatgaccccacccctacccccccacaa
tcactatcactgccatcattgctcagctcaagctacaaggctttttaccc
tcagtctgggacaagaaaaaagcaaaatccagagcactttgagatcagta
gggtatggggcaaattgaaaggcatctaccaccaggtttagcacatcccc
agaatggtacccagcagggaaagcaagacccagagcactgtttgctcagg
aagatcgttaccctccaaggttggcacaaccctcccaagaaaagggtcat
gttatgttcaggcttaaatataacaggcttgataggttctctgtaaaggg
ttgctccatgccattgtattgtaatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99404148_99405311
seq2: B6Ng01-185I06.b_47_1209 (reverse)

seq1  AGAT-TGTGAG--TCTGAGA-CA-GACTAGTCGGCTGAACTGCTCCACCC  45
      |||| ||||||  ||||||| || |||||||| ||||| |||||||||||
seq2  AGATATGTGAGTTTCTGAGATCAGGACTAGTC-GCTGATCTGCTCCACCC  49

seq1  TTGAGGCGAGGTGTTACCAGGGTGGAAACGCA-CTTGG-ATTGTGGCTGG  93
       |||| |||||||||| |||||||  |||||| ||||| ||||| |||||
seq2  -TGAGCCGAGGTGTTA-CAGGGTG--AACGCACCTTGGAATTGT-GCTGG  94

seq1  TGGGGGCAAACAACCTTTCTGAGGCTGGGGGCTCTCGGTAAGTTTCAGGA  143
      || |||||||||| |||||||||||||||||||||| |||||||||| ||
seq2  TGAGGGCAAACAA-CTTTCTGAGGCTGGGGGCTCTC-GTAAGTTTCA-GA  141

seq1  AACAAGAATCATAGCAGAAAATGAGTCATGTTCAGAGTATGCCGTAT-AT  192
      |||| |||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACAGGAATCATAGCAGAAAATGAGTCATGTTCAGAGTATGCCGTATAAT  191

seq1  CCGATAGGTGAAATAAGGCGACAGAAACTCAGAGACCAGCGCAGTCACAG  242
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CCGATAGGTGAAAATAGGCGACAGAAACTCAGAGACCAGCGCAGTCACAG  241

seq1  GCTGAGAAGGGAGGTCCCCAGCAAAGGAGAAACTGAACAAACATTTTATC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAGGGAGGTCCCCAGCAAAGGAGAAACTGAACAAACATTTTATC  291

seq1  CTGATGAGCCTTCCAAGGCTGGAACTCGACACCCTTCTAGAAACCTAAAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGCCTTCCAAGGCTGGAACTCGACACCCTTCTAGAAACCTAAAC  341

seq1  ACCAATCACATACCCAGTGCTGCTGCCTGCCAGGGAAGTAGCTCTAGGAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCACATACCCAGTGCTGCTGCCTGCCAGGGAAGTAGCTCTAGGAT  391

seq1  TCACACTGTTTCTTAAACAACGACTACCATCTTATTTCAAGACCTCAAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGTTTCTTAAACAACGACTACCATCTTATTTCAAGACCTCAAAG  441

seq1  AATAAATCCCACGCTCAGCCGCGAGATACGTTTTGGCATAGGACCCAATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCCCACGCTCAGCCGCGAGATACGTTTTGGCATAGGACCCAATC  491

seq1  AGCGTGCTCACTTCCAAGGCCTGCTTCACCGAGCCAACTCTACCTTTAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGCTCACTTCCAAGGCCTGCTTCACCGAGCCAACTCTACCTTTAAA  541

seq1  GACAACAAAAACAACCCACAAAAACAAGTTCTCACTGCACAGACCAAGTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAAAAACAACCCACAAAAACAAGTTCTCACTGCACAGACCAAGTT  591

seq1  GGCTTTCGACTCATGATCCTCCTGCCTCTGCCTTCCAGGAACCAAGATTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCGACTCATGATCCTCCTGCCTCTGCCTTCCAGGAACCAAGATTT  641

seq1  CAGACACGCATTACCCAGCTTCCACCTGGCTATCTGTCCACTGGTCTGTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACGCATTACCCAGCTTCCACCTGGCTATCTGTCCACTGGTCTGTC  691

seq1  TCACTCACTCCATCCTTCTACGGTAGTCATGAAGGCACCCTTGCTATTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACTCCATCCTTCTACGGTAGTCATGAAGGCACCCTTGCTATTTC  741

seq1  CTACATCGCCTTTCTGCTCACAGAAAGAAATCCTTCTGCTTTTATCTTTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCGCCTTTCTGCTCACAGAAAGAAATCCTTCTGCTTTTATCTTTG  791

seq1  AAGTCGAATTCACATCTGTCCTATTGATATTTCTCTTATTTCTGTCACAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGAATTCACATCTGTCCTATTGATATTTCTCTTATTTCTGTCACAC  841

seq1  TGACAGACGTCCCTATTCTAACCTAAAGTTTAAGCAAGGCTAAGATCGCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACGTCCCTATTCTAACCTAAAGTTTAAGCAAGGCTAAGATCGCC  891

seq1  ATAGTAAAAGATTTTGCAAGGCCAATGCGCCTGGAAGCTTTGCTTACTGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAAGATTTTGCAAGGCCAATGCGCCTGGAAGCTTTGCTTACTGA  941

seq1  GTATTCAAACAACAACAACAAAAATGAAAAAGAATTTTAAAAATCTACTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAAACAACAACAACAAAAATGAAAAAGAATTTTAAAAATCTACTG  991

seq1  AGCAAATGAAAAGTATACAGATACTTAAGAGATTGAAAAAGAAAGAAAGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGAAAAGTATACAGATACTTAAGAGATTGAAAAAGAAAGAAAGA  1041

seq1  AAGAAAAGGAAACGAAGGTTAAAGACCAGGTTGATATGGTTCTGAATAGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAAACGAAGGTTAAAGACCAGGTTGATATGGTTCTGAATAGG  1091

seq1  AGTTAATATTATTAGCAACAACTAATTGGAAGCACTCTTTATAATCAATT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATATTATTAGCAACAACTAATTGGAAGCACTCTTTATAATCAATT  1141

seq1  CAGATTTATTTGCCTTGAATTC  1164
      ||||||||||||||||||||||
seq2  CAGATTTATTTGCCTTGAATTC  1163

seq1: chr9_99303594_99304718
seq2: B6Ng01-185I06.g_66_1193

seq1  GAATTCAAATGAAACAAGAAACAGGTTTGTAATACAGCAAGCACCCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAAACAAGAAACAGGTTTGTAATACAGCAAGCACCCTGTG  50

seq1  AGCCCCCTGGGAGTGGGACCTCAGAGGCATCTTCCCGAGTGTGCCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTGGGAGTGGGACCTCAGAGGCATCTTCCCGAGTGTGCCTGCAC  100

seq1  ACATGACCACAGCCATGGGGAGGACAGCACAGGAAGGCAGGCCAGAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACCACAGCCATGGGGAGGACAGCACAGGAAGGCAGGCCAGAGATG  150

seq1  GGATGGAATCCTGACAATCCAGCTGTGTGCCTTCTCCCAGGGAGTTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAATCCTGACAATCCAGCTGTGTGCCTTCTCCCAGGGAGTTCAAC  200

seq1  TCCCACTCCCTAGAACCACCAGAATTGGCTGTCACATTGGAGAAGATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCCCTAGAACCACCAGAATTGGCTGTCACATTGGAGAAGATTCT  250

seq1  CATGCCCAGCCAACTATGCAGTGTGTGGCGGTCTTTGGGAGTTTGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCAGCCAACTATGCAGTGTGTGGCGGTCTTTGGGAGTTTGAGCCA  300

seq1  GTGCTAGCTGTCAGAAACTGACCAAGTACCGGAGGAAACCAGCTCAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGCTGTCAGAAACTGACCAAGTACCGGAGGAAACCAGCTCAAGGG  350

seq1  AGGAAGGATTTACTCAGTTTTAGATCACAGGACTGTGACGAGGCCAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGATTTACTCAGTTTTAGATCACAGGACTGTGACGAGGCCAAGCA  400

seq1  TCATGGTGGCAAGGATATGTGGAGGACAAAGCTGTTTGTCTCATGGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGGCAAGGATATGTGGAGGACAAAGCTGTTTGTCTCATGGTGGA  450

seq1  CAGGAAGAAAAGAGCAAGGGAGAGACTGGAGAGACTGGGTAGAACTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAAAAGAGCAAGGGAGAGACTGGAGAGACTGGGTAGAACTTCCA  500

seq1  AAGAGACACCACCAGTGACTGGCTTCCTCCAAGATCTCCCACCTCCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACCACCAGTGACTGGCTTCCTCCAAGATCTCCCACCTCCAAAA  550

seq1  AGATTGCCACTGCCTAGTGACCAAGCACTCAACACGGGAGCCTGTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCACTGCCTAGTGACCAAGCACTCAACACGGGAGCCTGTGGGAG  600

seq1  ACAGACATTCTGTATACAAATGATAACATTTGACCTTATTTCCATCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTCTGTATACAAATGATAACATTTGACCTTATTTCCATCTGTA  650

seq1  ACAGCAGCTACCATGACAGCATGTGTAAGAGGTAAAGAGTGCATTCATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGCTACCATGACAGCATGTGTAAGAGGTAAAGAGTGCATTCATGG  700

seq1  GTTTTACAGCAGTAACGGCCCATGACATCATCGCTATCATCATGACCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAGCAGTAACGGCCCATGACATCATCGCTATCATCATGACCCCA  750

seq1  CCCCATGACATCATCACTATCATCATGACCCCACCCCTACCCCCCCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATGACATCATCACTATCATCATGACCCCACCCCTACCCCCCCACAA  800

seq1  TCACTATCACTGCCATCATTGCTCAGCTCAAGCTACAAGGC-TTTTACCC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACTATCACTGCCATCATTGCTCAGCTCAAGCTACAAGGCTTTTTACCC  850

seq1  TCAGTCTGGGACAAG-AAAAAGCAAAATCCAGAGCACTTTGAGATCAGTA  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGGGACAAGAAAAAAGCAAAATCCAGAGCACTTTGAGATCAGTA  900

seq1  GGGTATGGGGCAAAT--GAAGGCATCTACCACCAGGTTTAGCACATCCCC  946
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  GGGTATGGGGCAAATTGAAAGGCATCTACCACCAGGTTTAGCACATCCCC  950

seq1  AG-ATGGTACCCAGCAGGGAAAGCAAGACCCCAGAGCACTGGTTGCTCAG  995
      || ||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  AGAATGGTACCCAGCAGGGAAAGCAAGA-CCCAGAGCACTGTTTGCTCAG  999

seq1  GAAGATCGTTACCCTCCAAGGTTTGCACA--CCTCCCA--GAAAGGGTCA  1041
      ||||||||||||||||||||||| |||||  |||||||   |||||||| 
seq2  GAAGATCGTTACCCTCCAAGGTTGGCACAACCCTCCCAAGAAAAGGGTC-  1048

seq1  ATGTTATGTTCAGGCCTAAATATAACAGGCCTTTGATTAAGGTTCTCTGT  1091
      ||||||||||||||| ||||||||||||||  |||||  |||||||||||
seq2  ATGTTATGTTCAGGCTTAAATATAACAGGC--TTGAT--AGGTTCTCTGT  1094

seq1  TAAGGTTTGGTCTCATGCTA-TGTATTGTAATGCT  1125
       |||| ||| || ||||| | ||||||||||||||
seq2  AAAGGGTTGCTC-CATGCCATTGTATTGTAATGCT  1128