BAC Information

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BAC

Clone NameB6Ng01-186E23
Chromosome9 (Build37)
Map Location 96,017,157 - 96,193,841
singlet/doubletdoublet
Overlap geneGk5, Tfdp2
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1, AI427122, 1700065D16Rik, Xrn1
Downstream gene1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2, LOC19034, LOC667226, Spsb4, LOC100040254, Slc25a36, EG622727, LOC384971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186E23.bB6Ng01-186E23.g
ACCGA011187GA011188
length1,1091,052
definitionB6Ng01-186E23.b B6Ng01-186E23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,017,157 - 96,018,255)(96,192,836 - 96,193,841)
sequence
gaattcagaaatctgcctgcctcttcctccccagtcctgggattaaaggc
gtgctccaccacgcccggctgtttttttgtttttttttttaaactgaaaa
gtgactgttgtgctcagccctttctccccaggctcaggtactccatgaaa
aagagcagcagaaacaatgcaggagtgtgaggattgggagaacaggtagg
cgtgctgtgaaatgctgcctcttggacctggcatggcttttgcccctatg
acctcactgcggctggcgattgacttgcacaacatcaagttaatagtcca
gcggcagcactaattggattggacccactgggttggggagggcagtgggg
acatgtttcaaggtgtccaggggaagtaggaagggaagattgagggtgaa
tacgaccaagataaattgttggaggtggagagttggctcagaggctaaga
gtccttattgcctgtgcagaggtcctgggttctattcccagcactcccat
ggcagttgacaaccatctataactccagtcccagaggctttgatgccctc
gtctgacctcccagagcaccaggcacacatgtgatgtacatatatacata
caggcaaaacattcatacacttaagaatgttttaaaagatacattgtatg
tatttatgaggttaacaaagaataaatgatattctaaaaaacaaacaaac
aagcaaaaaaacaagttttcttcaggtgacagcatttgtcaaggtttcaa
atttgtttgaaattggaaaactgtgcttgacctgttggcgcattgctata
attccaatgtgaggcgaagtcaggaggagtggcttgagttctaggccagc
ctctggtacactcagactctgtctcaagagaaataaaacaaaaatgagaa
actttttaaaaactctagactaagtatttttttaagatctgctctttcac
actttagaaactgctgatgtttgaccttacgaaaatgaatccacaaagtc
tcagagtataaaaccccaagaaattccttctgtgaagaagttccccaact
tgtctaacactgccttcactggaacctttttctttagttgttaagctgga
aactcatgg
gaattcactctgtagaccaggctaaccttaaactcaagagattaagtttc
tgcctgcttctgcctcccgtgtgctgggagcaaaggtgcgcaccatcttg
ccagatcattgggattttcttagtcagtctatttgaaacaaagagattca
ccataattctcagccacaccttctggtggcagcccagataaagaacatgc
aatacggaaattctgccttttgcctgcttgtccttgatctcactggcaag
ctcctctgtcctatggctgaagcattccttcaatagttttagatccaatt
ccttcaggatttcaacattcaccaaagaccagtagctctccaggaacctt
ccagaactccagctccagactggagggactcacagactgaattactatgt
gcttcttggctttttccactatgaaacagccattgctggactacccagac
cacaccctataaaccagtctaaattgctttttagtgtgtgtgtgtgtgtg
tattctttctagtacttctgttcctttagagaataataacgaatacaatt
aggaaagactcattaatggatcccaaagtacaggcactgtatcttacagg
ctacttttaaaatgcagtgaaaccactaagtggtttttgagttgcacagt
gagatacttactgacttatgcagaaactcttgtgttaaagtgaaaggtaa
atttatgggaaaataggaggtgaaagaaaagtcagctaagaagccaacta
caacagctgagcggatgacctggaactgggtcagtggaagggaaaaggga
cagacagaactgcaaaaagtagtgaaactaagaatctgattgatatggag
agaaagaaacagagaaatagcaagtctgaattgagtgcttaagtagtagt
agggtacactctgaggggctggtgagatggctcaatagaataaaggtgtt
tgtcttccagtcaatgacccagttagacctggacccaacaggaaaatact
ggattccattaaattgtccctctcacttacataattgttagtggcaatat
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_96017157_96018255
seq2: B6Ng01-186E23.b_45_1153

seq1  GAATTCAGAAATCTGCCTGCCTCTTCCTCCCCAGTCCTGGGATTAAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTGCCTGCCTCTTCCTCCCCAGTCCTGGGATTAAAGGC  50

seq1  GTGCTCCACCACGCCCGGCTGTTTTTTTGTTTTTTTTTTTAAACTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCACCACGCCCGGCTGTTTTTTTGTTTTTTTTTTTAAACTGAAAA  100

seq1  GTGACTGTTGTGCTCAGCCCTTTCTCCCCAGGCTCAGGTACTCCATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGTTGTGCTCAGCCCTTTCTCCCCAGGCTCAGGTACTCCATGAAA  150

seq1  AAGAGCAGCAGAAACAATGCAGGAGTGTGAGGATTGGGAGAACAGGTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCAGAAACAATGCAGGAGTGTGAGGATTGGGAGAACAGGTAGG  200

seq1  CGTGCTGTGAAATGCTGCCTCTTGGACCTGGCATGGCTTTTGCCCCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGTGAAATGCTGCCTCTTGGACCTGGCATGGCTTTTGCCCCTATG  250

seq1  ACCTCACTGCGGCTGGCGATTGACTTGCACAACATCAAGTTAATAGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTGCGGCTGGCGATTGACTTGCACAACATCAAGTTAATAGTCCA  300

seq1  GCGGCAGCACTAATTGGATTGGACCCACTGGGTTGGGGAGGGCAGTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAGCACTAATTGGATTGGACCCACTGGGTTGGGGAGGGCAGTGGGG  350

seq1  ACATGTTTCAAGGTGTCCAGGGGAAGTAGGAAGGGAAGATTGAGGGTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTCAAGGTGTCCAGGGGAAGTAGGAAGGGAAGATTGAGGGTGAA  400

seq1  TACGACCAAGATAAATTGTTGGAGGTGGAGAGTTGGCTCAGAGGCTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACCAAGATAAATTGTTGGAGGTGGAGAGTTGGCTCAGAGGCTAAGA  450

seq1  GTCCTTATTGCCTGTGCAGAGGTCCTGGGTTCTATTCCCAGCACTCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATTGCCTGTGCAGAGGTCCTGGGTTCTATTCCCAGCACTCCCAT  500

seq1  GGCAGTTGACAACCATCTATAACTCCAGTCCCAGAGGCTTTGATGCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTGACAACCATCTATAACTCCAGTCCCAGAGGCTTTGATGCCCTC  550

seq1  GTCTGACCTCCCAGAGCACCAGGCACACATGTGATGTACATATATACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCTCCCAGAGCACCAGGCACACATGTGATGTACATATATACATA  600

seq1  CAGGCAAAACATTCATACACTTAAGAATGTTTTAAAAGATACATTGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACATTCATACACTTAAGAATGTTTTAAAAGATACATTGTATG  650

seq1  TATTTATGAGGTTAACAAAGAATAAATGATATTCTAAAAAACAAACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGAGGTTAACAAAGAATAAATGATATTCTAAAAAACAAACAAAC  700

seq1  AAGCAAAAAAACAAGTTTTCTTCAGGTGACAGCATTTGTCAAGGTTTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAAACAAGTTTTCTTCAGGTGACAGCATTTGTCAAGGTTTCAA  750

seq1  ATTTGTTTGAAATTGGAAAACTGTGCTTGACCTGTTGGCGCATTGCTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGAAATTGGAAAACTGTGCTTGACCTGTTGGCGCATTGCTATA  800

seq1  ATTCCAATGTGAGGCGAAGTCAGGAGGAGTGGCTTGAGTTCTAGGCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATGTGAGGCGAAGTCAGGAGGAGTGGCTTGAGTTCTAGGCCAGC  850

seq1  CTCTGGTACACTCAGACTCTGTCTCAAGAGAAATAAAACAAAAATGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTACACTCAGACTCTGTCTCAAGAGAAATAAAACAAAAATGAGAA  900

seq1  ACTTTTTAAAAACTCTAGACTAAGTA-TTTTTTAAGATCTGCTCTTTCAC  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTTTTTAAAAACTCTAGACTAAGTATTTTTTTAAGATCTGCTCTTTCAC  950

seq1  ACTTTAGAAACTGCTGATGTTTGACCTTACGAAAATGA--TCACAAAGTC  997
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  ACTTTAGAAACTGCTGATGTTTGACCTTACGAAAATGAATCCACAAAGTC  1000

seq1  GCAGAGTATAAAACCCCCAAGAAATACC-TCTGTG-AGAAGTACACCAAC  1045
       |||||||||||| ||||||||||| || |||||| |||||| | |||||
seq2  TCAGAGTATAAAA-CCCCAAGAAATTCCTTCTGTGAAGAAGTTCCCCAAC  1049

seq1  -TGT-TAACACTGCCTACACT-GAAC--TTTTC-TTAGTTG-TAAGCAGG  1088
       ||| ||||||||||| |||| ||||  ||||| ||||||| |||||  |
seq2  TTGTCTAACACTGCCTTCACTGGAACCTTTTTCTTTAGTTGTTAAGC-TG  1098

seq1  GAAACTAATGG  1099
      |||||| ||||
seq2  GAAACTCATGG  1109

seq1: chr9_96192836_96193841
seq2: B6Ng01-186E23.g_117_1120 (reverse)

seq1  GCATA-TGCCACTAAACAATTATGTAAGTGAGA-GGACAATTTAATGGAA  48
      ||||| ||||||| ||||||||||||||||||| ||||||||||||||||
seq2  GCATATTGCCACT-AACAATTATGTAAGTGAGAGGGACAATTTAATGGAA  49

seq1  TCAGTTATTTTCCTGTTTGGGGTCCAGGTCTAACTGGGGTCATTGGACTT  98
      ||   ||||||||||||  |||||||||||||||| |||||||| |||| 
seq2  TCCAGTATTTTCCTGTT--GGGTCCAGGTCTAACT-GGGTCATT-GACTG  95

seq1  GGAGACAAACACCTTTA-TCTATTGAGCCATCTCACCAGCCCCTCAGAGT  147
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAGACAAACACCTTTATTCTATTGAGCCATCTCACCAGCCCCTCAGAGT  145

seq1  GTA-CCTACTACTACTTAAGCACTCAATTCAGACTTTGCTATTTCTCTGT  196
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTACCCTACTACTACTTAAGCACTCAATTCAGAC-TTGCTATTTCTCTGT  194

seq1  TTCTTTCTCTCCATATCAATCAGATTCTTAGTTTCACTACTTTTTGCAGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTCCATATCAATCAGATTCTTAGTTTCACTACTTTTTGCAGT  244

seq1  TCTGTCTGTCCCTTTTCCCTTCCACTGACCCAGTTCCAGGTCATCCGCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCCCTTTTCCCTTCCACTGACCCAGTTCCAGGTCATCCGCTC  294

seq1  AGCTGTTGTAGTTGGCTTCTTAGCTGACTTTTCTTTCACCTCCTATTTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTGTAGTTGGCTTCTTAGCTGACTTTTCTTTCACCTCCTATTTTC  344

seq1  CCATAAATTTACCTTTCACTTTAACACAAGAGTTTCTGCATAAGTCAGTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAATTTACCTTTCACTTTAACACAAGAGTTTCTGCATAAGTCAGTA  394

seq1  AGTATCTCACTGTGCAACTCAAAAACCACTTAGTGGTTTCACTGCATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCACTGTGCAACTCAAAAACCACTTAGTGGTTTCACTGCATTTT  444

seq1  AAAAGTAGCCTGTAAGATACAGTGCCTGTACTTTGGGATCCATTAATGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGCCTGTAAGATACAGTGCCTGTACTTTGGGATCCATTAATGAG  494

seq1  TCTTTCCTAATTGTATTCGTTATTATTCTCTAAAGGAACAGAAGTACTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTAATTGTATTCGTTATTATTCTCTAAAGGAACAGAAGTACTAG  544

seq1  AAAGAATACACACACACACACACACTAAAAAGCAATTTAGACTGGTTTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATACACACACACACACACACTAAAAAGCAATTTAGACTGGTTTAT  594

seq1  AGGGTGTGGTCTGGGTAGTCCAGCAATGGCTGTTTCATAGTGGAAAAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTGGTCTGGGTAGTCCAGCAATGGCTGTTTCATAGTGGAAAAAGC  644

seq1  CAAGAAGCACATAGTAATTCAGTCTGTGAGTCCCTCCAGTCTGGAGCTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGCACATAGTAATTCAGTCTGTGAGTCCCTCCAGTCTGGAGCTGG  694

seq1  AGTTCTGGAAGGTTCCTGGAGAGCTACTGGTCTTTGGTGAATGTTGAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGGAAGGTTCCTGGAGAGCTACTGGTCTTTGGTGAATGTTGAAAT  744

seq1  CCTGAAGGAATTGGATCTAAAACTATTGAAGGAATGCTTCAGCCATAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGAATTGGATCTAAAACTATTGAAGGAATGCTTCAGCCATAGGA  794

seq1  CAGAGGAGCTTGCCAGTGAGATCAAGGACAAGCAGGCAAAAGGCAGAATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGCTTGCCAGTGAGATCAAGGACAAGCAGGCAAAAGGCAGAATT  844

seq1  TCCGTATTGCATGTTCTTTATCTGGGCTGCCACCAGAAGGTGTGGCTGAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATTGCATGTTCTTTATCTGGGCTGCCACCAGAAGGTGTGGCTGAG  894

seq1  AATTATGGTGAATCTCTTTGTTTCAAATAGACTGACTAAGAAAATCCCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGTGAATCTCTTTGTTTCAAATAGACTGACTAAGAAAATCCCAA  944

seq1  TGATCTGGCAAGATGGTGCGCACCTTTGCTCCCAGCACACGGGAGGCAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGGCAAGATGGTGCGCACCTTTGCTCCCAGCACACGGGAGGCAGA  994

seq1  AGCAGGCAGA  1006
      ||||||||||
seq2  AGCAGGCAGA  1004