BAC Information

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BAC

Clone NameB6Ng01-188B18
Chromosome9 (Build37)9 (Build37)
Map Location 116,641,762 - 116,641,81962,078,581 - 62,079,638
singlet/doubletsingletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188B18.bB6Ng01-188B18.g
ACCGA012503GA012504
length3401,070
definitionB6Ng01-188B18.b B6Ng01-188B18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,641,762 - 116,641,819)(62,078,581 - 62,079,638)
sequence
caggactgtgaatttgccttccagttctgccaaaggtgtattccacatac
tttaaagtactctgtttttatgcccaatgcattttaaatttttctcctga
gatgcactttgatacatggatgatgttagagttttatttataggtttggg
agattttttttctctgctttatcctctattttaatctattattctattta
taatttctaagtttgaacccattgcagttaatgaacatagtctataggat
tttaatttgggtactgaagagatcgctccatagttaagaacacttgctgc
tcttccagaggacctgggttcagttctcagcatccacatg

gaattcacataaaaagtacagcccctcagatccaagtaagcacacatgga
agacatggtaagcccatcttttgtcattcccctttcgagaggcatgtcac
aacagtggatcagtgaaatagttcaccagtgctgttgttaaggaacggaa
caaatcacaagggtgtgtatcactatggatctaaccaccgtgggctaaac
cacggatctcaggagatagacacagagagactgcccccaggaacttgttt
ggcaagattgtacacagaccagcacacacacacacacacacacacacaca
cacacacacacactagcacagaagcttaatgcacttgagtttgggagaga
agtagggcacactggccaggactggattttgaaggacagtacagactcca
cttccgagactaactggtagggaggggcactgataggagcctgggaggaa
actgagcagataaagagaaagctgggccacttgcaagtttgttattagcc
ggatgccaagacaatggctctcgggctgggtgtggagtcagttggcagag
tatttgcatggaaccctggcttgatcagcagtgtggcatcaactgaggtg
agtggcacacacttgcaggcctagcatgagggaggtgaagggaggaggaa
gagaagttcaggtcatccttgacaacatccaaagttccaagccagcctga
gctggagaggtgactcagaggtgaagaagagcactagcagctcttccaga
ggacctgagttcagctttcagcttcatagcttcaggccccctaaaacctt
ctgtaactccagatccaggggggtctgacacatccgcagacacacatata
catcattaaaaataaatatcgataaaattcatttattccactgagggagg
ttttgggctttttgtttatttgggtttttggggtgtttttttttttccaa
attttttatgaatcctctgtaagtttcacagcatgtaccccactccccat
tgaatctccttccctccatataataccctctgcccttgcaacctggaaaa
aaaaattctcatttatgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116641762_116641819
seq2: B6Ng01-188B18.b_334_391 (reverse)

seq1  CATGTGGGTGCTGAGAATCGAACCCAGGTCCTCTGGAAGAGCAGCCAGTG  50
      ||||||| |||||||||  |||||||||||||||||||||||||| ||||
seq2  CATGTGGATGCTGAGAACTGAACCCAGGTCCTCTGGAAGAGCAGCAAGTG  50

seq1  CTCTTAAC  58
       |||||||
seq2  TTCTTAAC  58


seq1: chr9_62078581_62079638
seq2: B6Ng01-188B18.g_67_1136

seq1  GAATTCACATAAAAAGTACAGCCCCTCAGATCCAAGTAAGCACACATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAAAAAGTACAGCCCCTCAGATCCAAGTAAGCACACATGGA  50

seq1  AGACATGGTAAGCCCATCTTTTGTCATTCCCCTTTCGAGAGGCATGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGTAAGCCCATCTTTTGTCATTCCCCTTTCGAGAGGCATGTCAC  100

seq1  AACAGTGGATCAGTGAAATAGTTCACCAGTGCTGTTGTTAAGGAACGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGATCAGTGAAATAGTTCACCAGTGCTGTTGTTAAGGAACGGAA  150

seq1  CAAATCACAAGGGTGTGTATCACTATGGATCTAACCACCGTGGGCTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACAAGGGTGTGTATCACTATGGATCTAACCACCGTGGGCTAAAC  200

seq1  CACGGATCTCAGGAGATAGACACAGAGAGACTGCCCCCAGGAACTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATCTCAGGAGATAGACACAGAGAGACTGCCCCCAGGAACTTGTTT  250

seq1  GGCAAGATTGTACACAGACCAGCACACACACACACACACACACACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGATTGTACACAGACCAGCACACACACACACACACACACACACACA  300

seq1  CACACACACACACTAGCACAGAAGCTTAATGCACTTGAGTTTGGGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTAGCACAGAAGCTTAATGCACTTGAGTTTGGGAGAGA  350

seq1  AGTAGGGCACACTGGCCAGGACTGGATTTTGAAGGACAGTACAGACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGCACACTGGCCAGGACTGGATTTTGAAGGACAGTACAGACTCCA  400

seq1  CTTCCGAGACTAACTGGTAGGGAGGGGCACTGATAGGAGCCTGGGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGAGACTAACTGGTAGGGAGGGGCACTGATAGGAGCCTGGGAGGAA  450

seq1  ACTGAGCAGATAAAGAGAAAGCTGGGCCACTTGCAAGTTTGTTATTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCAGATAAAGAGAAAGCTGGGCCACTTGCAAGTTTGTTATTAGCC  500

seq1  GGATGCCAAGACAATGGCTCTCGGGCTGGGTGTGGAGTCAGTTGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCAAGACAATGGCTCTCGGGCTGGGTGTGGAGTCAGTTGGCAGAG  550

seq1  TATTTGCATGGAACCCTGGCTTGATCAGCAGTGTGGCATCAACTGAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATGGAACCCTGGCTTGATCAGCAGTGTGGCATCAACTGAGGTG  600

seq1  AGTGGCACACACTTGCAGGCCTAGCATGAGGGAGGTGAAGGGAGGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCACACACTTGCAGGCCTAGCATGAGGGAGGTGAAGGGAGGAGGAA  650

seq1  GAGAAGTTCAGGTCATCCTTGACAACATCCAAAGTTCCAAGCCAGCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTCAGGTCATCCTTGACAACATCCAAAGTTCCAAGCCAGCCTGA  700

seq1  GCTGGAGAGGTGACTCAGAGGTGAAGAAGAGCACTAGCAGCTCTTCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGGTGACTCAGAGGTGAAGAAGAGCACTAGCAGCTCTTCCAGA  750

seq1  GGACCTGAGTTCAGCTTTCAGCTTCATAGCTTCAGGCCCCCTAAAACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGTTCAGCTTTCAGCTTCATAGCTTCAGGCCCCCTAAAACCTT  800

seq1  CTGTAACTCCAGATCCAGGGGGGTCTGACACATCCGCAGACACACATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACTCCAGATCCAGGGGGGTCTGACACATCCGCAGACACACATATA  850

seq1  CATCATTAAAAAT-AATATCGATAAAA-TCATTTATTCCACTGAGGGAGG  898
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  CATCATTAAAAATAAATATCGATAAAATTCATTTATTCCACTGAGGGAGG  900

seq1  TTTT-GGCTTTTTGTTTATTTGG--TTTTTGGGTGTTTTTTTTTT--CTA  943
      |||| ||||||||||||||||||  |||| |||||||||||||||  | |
seq2  TTTTGGGCTTTTTGTTTATTTGGGTTTTTGGGGTGTTTTTTTTTTTCCAA  950

seq1  ATTTTTTATTGATTCTCTGTAAGTTTCACAGCATGTACCCCACT-CCCAC  992
      |||||||||  || |||||||||||||||||||||||||||||| |||| 
seq2  ATTTTTTATGAATCCTCTGTAAGTTTCACAGCATGTACCCCACTCCCCAT  1000

seq1  TG-ATCTCCCTTCCCTCCATAT-ATACCCTCTGCCCTTGCAACCTG--AA  1038
      || |||| |||||||||||||| |||||||||||||||||||||||  ||
seq2  TGAATCT-CCTTCCCTCCATATAATACCCTCTGCCCTTGCAACCTGGAAA  1049

seq1  AAAAAAATCTCA-TTATGAAA  1058
      |||||| ||||| ||||||||
seq2  AAAAAATTCTCATTTATGAAA  1070


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